Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
21:37:38 (1303578): wrapper (7.7.26015): starting
21:37:38 (1303578): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 21:37:38] Arguments: --nthreads 4
[2025-06-04 21:37:38] Threads: 4
[2025-06-04 21:37:38] Checking for CVMFS
[2025-06-04 21:37:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 21:37:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 21:37:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 21:37:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 21:37:38] 2.12.7.0 2709 2930 59312 146792 0 56 4393399 6144000 911 130560 0 3646113 99.994 684758 11231 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.46:3128 1
[2025-06-04 21:37:38] CVMFS is ok
[2025-06-04 21:37:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 21:37:38] Checking for apptainer binary...
[2025-06-04 21:37:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 21:37:38] Running /usr/bin/apptainer --version
[2025-06-04 21:37:38] apptainer version 1.4.0
[2025-06-04 21:37:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 21:37:38] TS-P310
[2025-06-04 21:37:38] apptainer works
[2025-06-04 21:37:38] Set ATHENA_PROC_NUMBER=4
[2025-06-04 21:37:38] Set ATHENA_CORE_NUMBER=4
[2025-06-04 21:37:38] Starting ATLAS job with PandaID=6677599674
[2025-06-04 21:37:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:37:44]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:37:44] 2025-06-04 21:37:28,634 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:37:44] 2025-06-04 21:37:28,635 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:37:44] 2025-06-04 21:37:28,635 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:37:44] 2025-06-04 21:37:28,637 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:37:44] 2025-06-04 21:37:28,637 | INFO     | sum of square deviations: 509440249.5
[2025-06-04 23:37:44] 2025-06-04 21:37:28,637 | INFO     | sum of deviations: -20067256223.500008
[2025-06-04 23:37:44] 2025-06-04 21:37:28,637 | INFO     | mean x: 1749069453.5
[2025-06-04 23:37:44] 2025-06-04 21:37:28,637 | INFO     | mean y: 2408484.245762712
[2025-06-04 23:37:44] 2025-06-04 21:37:28,637 | INFO     | -- intersect: 68899644049.22173
[2025-06-04 23:37:44] 2025-06-04 21:37:28,637 | INFO     | intersect: 68899644049.22173
[2025-06-04 23:37:44] 2025-06-04 21:37:28,637 | INFO     | chi2: 2.2092464466096904
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | sum of square deviations: 447383272.0
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | sum of deviations: -11986938651.0
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | mean x: 1749069301.0
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | mean y: 2427770.9292035396
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | -- intersect: 46866018163.362236
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | intersect: 46866018163.362236
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | chi2: 1.5572421642389538
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | current chi2=1.5572421642389538 (change=29.512519228957114 %)
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | sum of square deviations: 390582207.0
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | sum of deviations: -10830225083.5
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | mean x: 1749069148.5
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | mean y: 2430878.5092592593
[2025-06-04 23:37:44] 2025-06-04 21:37:28,638 | INFO     | -- intersect: 48501344104.37643
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | intersect: 48501344104.37643
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | chi2: 1.5544058166694237
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | current chi2=1.5544058166694237 (change=0.18213914538566772 %)
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | right removable region: 107
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | sum of square deviations: 447383272.0
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | sum of deviations: -33419597738.00003
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | mean x: 1749069606.0
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | mean y: 2440334.097345133
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | -- intersect: 130658203091.991
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | intersect: 130658203091.991
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | chi2: 0.8373006893370926
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | current chi2=0.8373006893370926 (change=62.100168108360464 %)
[2025-06-04 23:37:44] 2025-06-04 21:37:28,639 | INFO     | sum of square deviations: 390582207.0
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | sum of deviations: -29282464247.500004
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | mean x: 1749069758.5
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | mean y: 2429214.435185185
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | -- intersect: 131132500558.5702
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | intersect: 131132500558.5702
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | chi2: 0.8375857800367448
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | current chi2=0.8375857800367448 (change=-0.0340487835831026 %)
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | left removable region: 20
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | sum of square deviations: 204163828.0
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | sum of deviations: -12628108309.000004
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | mean x: 1749069728.0
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | mean y: 2429027.1379310344
[2025-06-04 23:37:44] 2025-06-04 21:37:28,640 | INFO     | -- intersect: 108187322411.7642
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | intersect: 108187322411.7642
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | chi2: 0.1265836622312434
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | -- intersect: 108187322411.7642
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | current memory leak: -61.85 B/s (using 87 data points, chi2=0.13)
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | ..............................
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | . Timing measurements:
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | . get job = 0 s
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | . initial setup = 1 s
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | . payload setup = 4 s
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | . stage-in = 0 s
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | . payload execution = 7154 s
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | . stage-out = 0 s
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | . log creation = 0 s
[2025-06-04 23:37:44] 2025-06-04 21:37:28,641 | INFO     | ..............................
[2025-06-04 23:37:44] 2025-06-04 21:37:29,093 | INFO     | 
[2025-06-04 23:37:44] 2025-06-04 21:37:29,093 | INFO     | job summary report
[2025-06-04 23:37:44] 2025-06-04 21:37:29,093 | INFO     | --------------------------------------------------
[2025-06-04 23:37:44] 2025-06-04 21:37:29,093 | INFO     | PanDA job id: 6677599674
[2025-06-04 23:37:44] 2025-06-04 21:37:29,093 | INFO     | task id: 45006595
[2025-06-04 23:37:44] 2025-06-04 21:37:29,093 | INFO     | errors: (none)
[2025-06-04 23:37:44] 2025-06-04 21:37:29,093 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:37:44] 2025-06-04 21:37:29,093 | INFO     | pilot state: finished 
[2025-06-04 23:37:44] 2025-06-04 21:37:29,093 | INFO     | transexitcode: 0
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | exeerrorcode: 0
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | exeerrordiag: 
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | exitcode: 0
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | exitmsg: OK
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | cpuconsumptiontime: 27585 s
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | nevents: 400
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | neventsw: 0
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | pid: 1313658
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | pgrp: 1313658
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | corecount: 4
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | event service: False
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | sizes: {0: 2397340, 2: 2397546, 11: 2397574, 7162: 2424753, 7163: 2433696, 7166: 2433752, 7171: 2434050}
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | --------------------------------------------------
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | 
[2025-06-04 23:37:44] 2025-06-04 21:37:29,094 | INFO     | executing command: ls -lF /var/lib/boinc2/slots/0
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,106 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,107 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:37:44] 2025-06-04 21:37:29,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,107 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:37:44] 2025-06-04 21:37:29,107 | INFO     | job 6677599674 has completed (purged errors)
[2025-06-04 23:37:44] 2025-06-04 21:37:29,107 | INFO     | overall cleanup function is called
[2025-06-04 23:37:44] 2025-06-04 21:37:30,114 | INFO     | --- collectZombieJob: --- 10, [1313658]
[2025-06-04 23:37:44] 2025-06-04 21:37:30,114 | INFO     | zombie collector waiting for pid 1313658
[2025-06-04 23:37:44] 2025-06-04 21:37:30,114 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:37:44] 2025-06-04 21:37:30,114 | INFO     | collected zombie processes
[2025-06-04 23:37:44] 2025-06-04 21:37:30,114 | INFO     | will attempt to kill all subprocesses of pid=1313658
[2025-06-04 23:37:44] 2025-06-04 21:37:30,177 | INFO     | process IDs to be killed: [1313658] (in reverse order)
[2025-06-04 23:37:44] 2025-06-04 21:37:30,204 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:37:44] 2025-06-04 21:37:30,204 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:37:44] 2025-06-04 21:37:30,206 | INFO     | did not find any defunct processes belonging to 1313658
[2025-06-04 23:37:44] 2025-06-04 21:37:30,208 | INFO     | did not find any defunct processes belonging to 1313658
[2025-06-04 23:37:44] 2025-06-04 21:37:30,208 | INFO     | ready for new job
[2025-06-04 23:37:44] 2025-06-04 21:37:30,208 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:37:44] 2025-06-04 21:37:30,209 | INFO     | **************************************
[2025-06-04 23:37:44] 2025-06-04 21:37:30,209 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:37:44] 2025-06-04 21:37:30,209 | INFO     | **************************************
[2025-06-04 23:37:44] 2025-06-04 21:37:30,209 | INFO     | 
[2025-06-04 23:37:44] 2025-06-04 21:37:30,210 | INFO     | architecture information:
[2025-06-04 23:37:44] 2025-06-04 21:37:30,210 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:37:44] 2025-06-04 21:37:30,218 | INFO     | cat /etc/os-release:
[2025-06-04 23:37:44] NAME="CentOS Linux"
[2025-06-04 23:37:44] VERSION="7 (Core)"
[2025-06-04 23:37:44] ID="centos"
[2025-06-04 23:37:44] ID_LIKE="rhel fedora"
[2025-06-04 23:37:44] VERSION_ID="7"
[2025-06-04 23:37:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:37:44] ANSI_COLOR="0;31"
[2025-06-04 23:37:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:37:44] HOME_URL="https://www.centos.org/"
[2025-06-04 23:37:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:37:44] 
[2025-06-04 23:37:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:37:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:37:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:37:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:37:44] 
[2025-06-04 23:37:44] 2025-06-04 21:37:30,219 | INFO     | **************************************
[2025-06-04 23:37:44] 2025-06-04 21:37:30,493 | INFO     | PID=1307197 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 23:37:44] 2025-06-04 21:37:30,493 | INFO     | .. there are 2 such processes running
[2025-06-04 23:37:44] 2025-06-04 21:37:30,721 | INFO     | executing command: df -mP /var/lib/boinc2/slots/0
[2025-06-04 23:37:44] 2025-06-04 21:37:30,730 | INFO     | sufficient remaining disk space (90129301504 B)
[2025-06-04 23:37:44] 2025-06-04 21:37:30,730 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:37:44] 2025-06-04 21:37:30,730 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:37:44] 2025-06-04 21:37:30,730 | INFO     | update_server=False
[2025-06-04 23:37:44] 2025-06-04 21:37:30,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:37:44] 2025-06-04 21:37:30,731 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:37:44] 2025-06-04 21:37:30,731 | INFO     | aborting loop
[2025-06-04 23:37:44] 2025-06-04 21:37:30,731 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 23:37:44] 2025-06-04 21:37:30,731 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:37:44] 2025-06-04 21:37:30,731 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:37:44] 2025-06-04 21:37:30,731 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:37:44] 2025-06-04 21:37:31,250 | INFO     | all payload control threads have been joined
[2025-06-04 23:37:44] 2025-06-04 21:37:31,400 | INFO     | all data control threads have been joined
[2025-06-04 23:37:44] 2025-06-04 21:37:31,589 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:37:44] 2025-06-04 21:37:31,733 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:31,734 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:31,900 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:32,025 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:32,217 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:32,254 | INFO     | all job control threads have been joined
[2025-06-04 23:37:44] 2025-06-04 21:37:32,254 | INFO     | [payload] control thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:32,403 | INFO     | [data] control thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:32,678 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:32,977 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:33,085 | INFO     | [job] validate thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:33,093 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:33,195 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:33,259 | INFO     | [job] control thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:33,594 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:33,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:37:44] 2025-06-04 21:37:33,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:37:44] 2025-06-04 21:37:34,692 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:37,672 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:37:44] 2025-06-04 21:37:39,564 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124390796269376)>', '<ExcThread(monitor, started 124390146557696)>']
[2025-06-04 23:37:44] 2025-06-04 21:37:39,772 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:37:44] 2025-06-04 21:37:39,772 | INFO     | [monitor] control thread has ended
[2025-06-04 23:37:44] 2025-06-04 21:37:42,467 [wrapper] supervise_pilot (15 min periods counter: 9)
[2025-06-04 23:37:44] 2025-06-04 21:37:44,565 | INFO     | all workflow threads have been joined
[2025-06-04 23:37:44] 2025-06-04 21:37:44,567 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:37:44] 2025-06-04 21:37:44,567 | INFO     | traces error code: 0
[2025-06-04 23:37:44] 2025-06-04 21:37:44,567 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:37:44] 2025-06-04 21:37:44,647 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:37:44] 2025-06-04 21:37:44,649 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:37:44] 2025-06-04 21:37:44,650 [wrapper] pilotpid: 1307197
[2025-06-04 23:37:44] 2025-06-04 21:37:44,652 [wrapper] Pilot exit status: 0
[2025-06-04 23:37:44] 2025-06-04 21:37:44,658 [wrapper] pandaids: 6677599674
[2025-06-04 23:37:44] 2025-06-04 21:37:44,676 [wrapper] cleanup supervisor_pilot 1355505 1307198
[2025-06-04 23:37:44] 2025-06-04 21:37:44,678 [wrapper] Test setup, not cleaning
[2025-06-04 23:37:44] 2025-06-04 21:37:44,679 [wrapper] apfmon messages muted
[2025-06-04 23:37:44] 2025-06-04 21:37:44,681 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:37:44] 2025-06-04 21:37:44,683 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:37:44]  *** Error codes and diagnostics ***
[2025-06-04 23:37:44]     "exeErrorCode": 0,
[2025-06-04 23:37:44]     "exeErrorDiag": "",
[2025-06-04 23:37:44]     "pilotErrorCode": 0,
[2025-06-04 23:37:44]     "pilotErrorDiag": "",
[2025-06-04 23:37:44]  *** Listing of results directory ***
[2025-06-04 23:37:44] insgesamt 389020
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc    495897  3. Jun 12:57 pilot3.tar.gz
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc      5111  3. Jun 13:28 queuedata.json
[2025-06-04 23:37:44] -rwx------ 1 boinc boinc     37140  3. Jun 13:29 runpilot2-wrapper.sh
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc       100  4. Jun 21:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:37:44] -rwxr-xr-x 1 boinc boinc      7986  4. Jun 21:37 run_atlas
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc       105  4. Jun 21:37 job.xml
[2025-06-04 23:37:44] -rw-r--r-- 2 boinc boinc 213799353  4. Jun 21:37 EVNT.45006593._001233.pool.root.1
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc      6726  4. Jun 21:37 init_data.xml
[2025-06-04 23:37:44] drwxrwx--x 2 boinc boinc      4096  4. Jun 21:37 shared
[2025-06-04 23:37:44] -rw-r--r-- 2 boinc boinc    508881  4. Jun 21:37 input.tar.gz
[2025-06-04 23:37:44] -rw-r--r-- 2 boinc boinc     15093  4. Jun 21:37 start_atlas.sh
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc         0  4. Jun 21:37 boinc_lockfile
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc      2523  4. Jun 21:37 pandaJob.out
[2025-06-04 23:37:44] -rw------- 1 boinc boinc    991007  4. Jun 21:37 agis_schedconf.cvmfs.json
[2025-06-04 23:37:44] -rw------- 1 boinc boinc   1598969  4. Jun 21:37 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:37:44] drwx------ 4 boinc boinc      4096  4. Jun 21:37 pilot3
[2025-06-04 23:37:44] -rw------- 1 boinc boinc        95  4. Jun 23:36 pilot_heartbeat.json
[2025-06-04 23:37:44] -rw------- 1 boinc boinc 178808472  4. Jun 23:36 HITS.45006595._030760.pool.root.1
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc       529  4. Jun 23:36 boinc_task_state.xml
[2025-06-04 23:37:44] -rw------- 1 boinc boinc      1017  4. Jun 23:37 memory_monitor_summary.json
[2025-06-04 23:37:44] -rw------- 1 boinc boinc    253982  4. Jun 23:37 log.45006595._030760.job.log.tgz.1
[2025-06-04 23:37:44] -rw------- 1 boinc boinc      7658  4. Jun 23:37 heartbeat.json
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc      8192  4. Jun 23:37 boinc_mmap_file
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc        27  4. Jun 23:37 wrapper_checkpoint.txt
[2025-06-04 23:37:44] -rw------- 1 boinc boinc      4871  4. Jun 23:37 pilotlog.txt
[2025-06-04 23:37:44] -rw------- 1 boinc boinc    697544  4. Jun 23:37 log.45006595._030760.job.log.1
[2025-06-04 23:37:44] -rw------- 1 boinc boinc       357  4. Jun 23:37 output.list
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc       620  4. Jun 23:37 runtime_log
[2025-06-04 23:37:44] -rw------- 1 boinc boinc    972800  4. Jun 23:37 result.tar.gz
[2025-06-04 23:37:44] -rw------- 1 boinc boinc       644  4. Jun 23:37 ve5NDmF1eg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKnjKDm2IvaCo.diag
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc      8641  4. Jun 23:37 runtime_log.err
[2025-06-04 23:37:44] -rw-r--r-- 1 boinc boinc     20571  4. Jun 23:37 stderr.txt
[2025-06-04 23:37:44] HITS file was successfully produced:
[2025-06-04 23:37:44] -rw------- 1 boinc boinc 178808472  4. Jun 23:36 shared/HITS.pool.root.1
[2025-06-04 23:37:44]  *** Contents of shared directory: ***
[2025-06-04 23:37:44] insgesamt 384888
[2025-06-04 23:37:44] -rw-r--r-- 2 boinc boinc 213799353  4. Jun 21:37 ATLAS.root_0
[2025-06-04 23:37:44] -rw-r--r-- 2 boinc boinc    508881  4. Jun 21:37 input.tar.gz
[2025-06-04 23:37:44] -rw-r--r-- 2 boinc boinc     15093  4. Jun 21:37 start_atlas.sh
[2025-06-04 23:37:44] -rw------- 1 boinc boinc 178808472  4. Jun 23:36 HITS.pool.root.1
[2025-06-04 23:37:44] -rw------- 1 boinc boinc    972800  4. Jun 23:37 result.tar.gz
23:37:45 (1303578): run_atlas exited; CPU time 27651.505526
23:37:45 (1303578): called boinc_finish(0)

</stderr_txt>
]]>

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