Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:36:51 (22578): wrapper (7.7.26015): starting
01:36:51 (22578): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 01:36:51] Arguments: --nthreads 8
[2025-06-04 01:36:51] Threads: 8
[2025-06-04 01:36:51] Checking for CVMFS
[2025-06-04 01:36:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 01:36:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 01:36:53] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 01:36:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 01:36:54] 2.11.2.0 10408 32446 94604 146761 1 69 20254990 25165824 4293 130560 0 17567028 99.810 18688322 1941 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 01:36:54] CVMFS is ok
[2025-06-04 01:36:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 01:36:54] Checking for apptainer binary...
[2025-06-04 01:36:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 01:36:54] Running /usr/bin/apptainer --version
[2025-06-04 01:36:54] apptainer version 1.3.2-1.el7
[2025-06-04 01:36:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:47:51] cg-vwn360.simple-grid.lan
[2025-06-04 01:47:51] apptainer works
[2025-06-04 01:47:51] Set ATHENA_PROC_NUMBER=8
[2025-06-04 01:47:51] Set ATHENA_CORE_NUMBER=8
[2025-06-04 01:47:51] Starting ATLAS job with PandaID=6677576409
[2025-06-04 01:47:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:22:30]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:22:30] 2025-06-04 03:44:58,142 | INFO     | extracted standard info from prmon json
[2025-06-04 08:22:30] 2025-06-04 03:44:58,142 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:22:30] 2025-06-04 03:44:58,142 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:22:30] 2025-06-04 03:44:58,142 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:22:30] 2025-06-04 03:44:58,142 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:22:30] 2025-06-04 03:44:58,147 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:22:30] 2025-06-04 03:44:58,148 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 08:22:30] 2025-06-04 03:44:58,149 | INFO     | sum of deviations: 51691189306.00001
[2025-06-04 08:22:30] 2025-06-04 03:44:58,150 | INFO     | mean x: 1749001848.5
[2025-06-04 08:22:30] 2025-06-04 03:44:58,150 | INFO     | mean y: 2442092.1981981983
[2025-06-04 08:22:30] 2025-06-04 03:44:58,150 | INFO     | -- intersect: -26646394746.752293
[2025-06-04 08:22:30] 2025-06-04 03:44:58,150 | INFO     | intersect: -26646394746.752293
[2025-06-04 08:22:30] 2025-06-04 03:44:58,150 | INFO     | chi2: 5.250137709217598
[2025-06-04 08:22:30] 2025-06-04 03:44:58,151 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,152 | INFO     | sum of deviations: 64661070306.0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,152 | INFO     | mean x: 1749001696.0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,153 | INFO     | mean y: 2450736.608294931
[2025-06-04 08:22:30] 2025-06-04 03:44:58,153 | INFO     | -- intersect: -35690686109.516235
[2025-06-04 08:22:30] 2025-06-04 03:44:58,153 | INFO     | intersect: -35690686109.516235
[2025-06-04 08:22:30] 2025-06-04 03:44:58,153 | INFO     | chi2: 4.523269066613082
[2025-06-04 08:22:30] 2025-06-04 03:44:58,153 | INFO     | current chi2=4.523269066613082 (change=13.844753849567834 %)
[2025-06-04 08:22:30] 2025-06-04 03:44:58,154 | INFO     | right removable region: 216
[2025-06-04 08:22:30] 2025-06-04 03:44:58,154 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,156 | INFO     | sum of deviations: -17964735460.0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,156 | INFO     | mean x: 1749002001.0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,156 | INFO     | mean y: 2489399.8479262674
[2025-06-04 08:22:30] 2025-06-04 03:44:58,156 | INFO     | -- intersect: 9919087902.820587
[2025-06-04 08:22:30] 2025-06-04 03:44:58,157 | INFO     | intersect: 9919087902.820587
[2025-06-04 08:22:30] 2025-06-04 03:44:58,157 | INFO     | chi2: 1.31897507134046
[2025-06-04 08:22:30] 2025-06-04 03:44:58,157 | INFO     | current chi2=1.31897507134046 (change=74.87732428380397 %)
[2025-06-04 08:22:30] 2025-06-04 03:44:58,158 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,159 | INFO     | sum of deviations: -34515947078.0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,160 | INFO     | mean x: 1749002153.5
[2025-06-04 08:22:30] 2025-06-04 03:44:58,160 | INFO     | mean y: 2501068.3773584906
[2025-06-04 08:22:30] 2025-06-04 03:44:58,160 | INFO     | -- intersect: 20435579169.55521
[2025-06-04 08:22:30] 2025-06-04 03:44:58,160 | INFO     | intersect: 20435579169.55521
[2025-06-04 08:22:30] 2025-06-04 03:44:58,160 | INFO     | chi2: 0.9208780668471893
[2025-06-04 08:22:30] 2025-06-04 03:44:58,160 | INFO     | current chi2=0.9208780668471893 (change=30.182299358295605 %)
[2025-06-04 08:22:30] 2025-06-04 03:44:58,161 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,163 | INFO     | sum of deviations: -29606910712.000008
[2025-06-04 08:22:30] 2025-06-04 03:44:58,163 | INFO     | mean x: 1749002306.0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,163 | INFO     | mean y: 2497371.473429952
[2025-06-04 08:22:30] 2025-06-04 03:44:58,163 | INFO     | -- intersect: 18830495708.51022
[2025-06-04 08:22:30] 2025-06-04 03:44:58,163 | INFO     | intersect: 18830495708.51022
[2025-06-04 08:22:30] 2025-06-04 03:44:58,163 | INFO     | chi2: 0.9029686570240696
[2025-06-04 08:22:30] 2025-06-04 03:44:58,164 | INFO     | current chi2=0.9029686570240696 (change=1.9448188058638622 %)
[2025-06-04 08:22:30] 2025-06-04 03:44:58,164 | INFO     | left removable region: 30
[2025-06-04 08:22:30] 2025-06-04 03:44:58,164 | INFO     | sum of square deviations: 1995283922.5
[2025-06-04 08:22:30] 2025-06-04 03:44:58,165 | INFO     | sum of deviations: 3380303105.0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,166 | INFO     | mean x: 1749002580.5
[2025-06-04 08:22:30] 2025-06-04 03:44:58,166 | INFO     | mean y: 2491531.806451613
[2025-06-04 08:22:30] 2025-06-04 03:44:58,166 | INFO     | -- intersect: -2960574920.4654117
[2025-06-04 08:22:30] 2025-06-04 03:44:58,166 | INFO     | intersect: -2960574920.4654117
[2025-06-04 08:22:30] 2025-06-04 03:44:58,166 | INFO     | chi2: 0.0007000348332968121
[2025-06-04 08:22:30] 2025-06-04 03:44:58,167 | INFO     | -- intersect: -2960574920.4654117
[2025-06-04 08:22:30] 2025-06-04 03:44:58,167 | INFO     | current memory leak: 1.69 B/s (using 186 data points, chi2=0.00)
[2025-06-04 08:22:30] 2025-06-04 03:44:58,168 | INFO     | ..............................
[2025-06-04 08:22:30] 2025-06-04 03:44:58,168 | INFO     | . Timing measurements:
[2025-06-04 08:22:30] 2025-06-04 03:44:58,168 | INFO     | . get job = 0 s
[2025-06-04 08:22:30] 2025-06-04 03:44:58,168 | INFO     | . initial setup = 6 s
[2025-06-04 08:22:30] 2025-06-04 03:44:58,168 | INFO     | . payload setup = 140 s
[2025-06-04 08:22:30] 2025-06-04 03:44:58,168 | INFO     | . stage-in = 0 s
[2025-06-04 08:22:30] 2025-06-04 03:44:58,168 | INFO     | . payload execution = 13627 s
[2025-06-04 08:22:30] 2025-06-04 03:44:58,168 | INFO     | . stage-out = 4 s
[2025-06-04 08:22:30] 2025-06-04 03:44:58,169 | INFO     | . log creation = 1 s
[2025-06-04 08:22:30] 2025-06-04 03:44:58,169 | INFO     | ..............................
[2025-06-04 08:22:30] 2025-06-04 03:44:58,325 | INFO     | 
[2025-06-04 08:22:30] 2025-06-04 03:44:58,326 | INFO     | job summary report
[2025-06-04 08:22:30] 2025-06-04 03:44:58,326 | INFO     | --------------------------------------------------
[2025-06-04 08:22:30] 2025-06-04 03:44:58,326 | INFO     | PanDA job id: 6677576409
[2025-06-04 08:22:30] 2025-06-04 03:44:58,326 | INFO     | task id: 45006595
[2025-06-04 08:22:30] 2025-06-04 03:44:58,326 | INFO     | errors: (none)
[2025-06-04 08:22:30] 2025-06-04 03:44:58,326 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:22:30] 2025-06-04 03:44:58,326 | INFO     | pilot state: finished 
[2025-06-04 08:22:30] 2025-06-04 03:44:58,326 | INFO     | transexitcode: 0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,326 | INFO     | exeerrorcode: 0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,326 | INFO     | exeerrordiag: 
[2025-06-04 08:22:30] 2025-06-04 03:44:58,326 | INFO     | exitcode: 0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,327 | INFO     | exitmsg: OK
[2025-06-04 08:22:30] 2025-06-04 03:44:58,327 | INFO     | cpuconsumptiontime: 49473 s
[2025-06-04 08:22:30] 2025-06-04 03:44:58,327 | INFO     | nevents: 400
[2025-06-04 08:22:30] 2025-06-04 03:44:58,327 | INFO     | neventsw: 0
[2025-06-04 08:22:30] 2025-06-04 03:44:58,327 | INFO     | pid: 6758
[2025-06-04 08:22:30] 2025-06-04 03:44:58,327 | INFO     | pgrp: 6758
[2025-06-04 08:22:30] 2025-06-04 03:44:58,327 | INFO     | corecount: 8
[2025-06-04 08:22:30] 2025-06-04 03:44:58,327 | INFO     | event service: False
[2025-06-04 08:22:30] 2025-06-04 03:44:58,327 | INFO     | sizes: {0: 2404957, 1: 2405212, 12: 2405212, 23: 2405240, 34: 2405268, 44: 2405296, 55: 2405452, 66: 2405480, 77: 2405508, 87: 2405564, 89: 2405798, 98: 2406106, 1
[2025-06-04 08:22:30] 2025-06-04 03:44:58,327 | INFO     | --------------------------------------------------
[2025-06-04 08:22:30] 2025-06-04 03:44:58,327 | INFO     | 
[2025-06-04 08:22:30] 2025-06-04 03:44:58,328 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-04 08:22:30] 2025-06-04 03:44:58,631 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,631 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,631 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,631 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,632 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,632 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,632 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,632 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,632 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,632 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,632 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,632 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,632 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,633 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,633 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,633 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,633 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,633 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:22:30] 2025-06-04 03:44:58,633 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,633 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:22:30] 2025-06-04 03:44:58,633 | INFO     | job 6677576409 has completed (purged errors)
[2025-06-04 08:22:30] 2025-06-04 03:44:58,633 | INFO     | overall cleanup function is called
[2025-06-04 08:22:30] 2025-06-04 03:44:59,643 | INFO     | --- collectZombieJob: --- 10, [6758]
[2025-06-04 08:22:30] 2025-06-04 03:44:59,644 | INFO     | zombie collector waiting for pid 6758
[2025-06-04 08:22:30] 2025-06-04 03:44:59,644 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:22:30] 2025-06-04 03:44:59,644 | INFO     | collected zombie processes
[2025-06-04 08:22:30] 2025-06-04 03:44:59,644 | INFO     | will attempt to kill all subprocesses of pid=6758
[2025-06-04 08:22:30] 2025-06-04 03:44:59,750 | INFO     | process IDs to be killed: [6758] (in reverse order)
[2025-06-04 08:22:30] 2025-06-04 03:45:00,608 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:22:30] 2025-06-04 03:45:00,608 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:22:30] 2025-06-04 03:45:00,612 | INFO     | did not find any defunct processes belonging to 6758
[2025-06-04 08:22:30] 2025-06-04 03:45:00,616 | INFO     | did not find any defunct processes belonging to 6758
[2025-06-04 08:22:30] 2025-06-04 03:45:00,616 | INFO     | ready for new job
[2025-06-04 08:22:30] 2025-06-04 03:45:00,616 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:22:30] 2025-06-04 03:45:00,618 | INFO     | **************************************
[2025-06-04 08:22:30] 2025-06-04 03:45:00,619 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:22:30] 2025-06-04 03:45:00,619 | INFO     | **************************************
[2025-06-04 08:22:30] 2025-06-04 03:45:00,619 | INFO     | 
[2025-06-04 08:22:30] 2025-06-04 03:45:00,619 | INFO     | pilot is running in a VM
[2025-06-04 08:22:30] 2025-06-04 03:45:00,620 | INFO     | architecture information:
[2025-06-04 08:22:30] 2025-06-04 03:45:00,635 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:22:30] 2025-06-04 03:45:01,011 | INFO     | cat /etc/os-release:
[2025-06-04 08:22:30] NAME="CentOS Linux"
[2025-06-04 08:22:30] VERSION="7 (Core)"
[2025-06-04 08:22:30] ID="centos"
[2025-06-04 08:22:30] ID_LIKE="rhel fedora"
[2025-06-04 08:22:30] VERSION_ID="7"
[2025-06-04 08:22:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:22:30] ANSI_COLOR="0;31"
[2025-06-04 08:22:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:22:30] HOME_URL="https://www.centos.org/"
[2025-06-04 08:22:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:22:30] 
[2025-06-04 08:22:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:22:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:22:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:22:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:22:30] 
[2025-06-04 08:22:30] 2025-06-04 03:45:01,011 | INFO     | **************************************
[2025-06-04 08:22:30] 2025-06-04 03:45:01,515 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-04 08:22:30] 2025-06-04 03:45:01,731 | INFO     | sufficient remaining disk space (496602447872 B)
[2025-06-04 08:22:30] 2025-06-04 03:45:01,731 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:22:30] 2025-06-04 03:45:01,732 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:22:30] 2025-06-04 03:45:01,732 | INFO     | update_server=False
[2025-06-04 08:22:30] 2025-06-04 03:45:01,732 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:22:30] 2025-06-04 03:45:01,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:22:30] 2025-06-04 03:45:01,733 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:22:30] 2025-06-04 03:45:01,733 | INFO     | aborting loop
[2025-06-04 08:22:30] 2025-06-04 03:45:01,733 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:22:30] 2025-06-04 03:45:01,737 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 08:22:30] 2025-06-04 03:45:01,738 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:22:30] 2025-06-04 03:45:01,738 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:22:30] 2025-06-04 03:45:01,738 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:22:30] 2025-06-04 03:45:02,313 | INFO     | all data control threads have been joined
[2025-06-04 08:22:30] 2025-06-04 03:45:02,580 | INFO     | all payload control threads have been joined
[2025-06-04 08:22:30] 2025-06-04 03:45:02,738 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:02,738 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:02,752 | INFO     | [job] validate thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:03,037 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:03,306 | INFO     | all job control threads have been joined
[2025-06-04 08:22:30] 2025-06-04 03:45:03,320 | INFO     | [data] control thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:03,335 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:03,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:22:30] 2025-06-04 03:45:03,399 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:03,586 | INFO     | [payload] control thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:03,630 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:03,713 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:03,741 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:03,861 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:04,106 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:04,312 | INFO     | [job] control thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:04,346 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:05,744 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:22:30] 2025-06-04 03:45:06,861 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139655937570624)>', '<ExcThread(monitor, started 139655425029888)>']
[2025-06-04 08:22:30] 2025-06-04 03:45:07,774 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:22:30] 2025-06-04 03:45:07,775 | INFO     | [monitor] control thread has ended
[2025-06-04 08:22:30] 2025-06-04 03:45:11,887 | INFO     | all workflow threads have been joined
[2025-06-04 08:22:30] 2025-06-04 03:45:11,888 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:22:30] 2025-06-04 03:45:11,888 | INFO     | traces error code: 0
[2025-06-04 08:22:30] 2025-06-04 03:45:11,888 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:22:30] 2025-06-04 03:45:12,260 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:22:30] 2025-06-04 03:45:12,328 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:22:30] 2025-06-04 03:45:12,378 [wrapper] pilotpid: 32554
[2025-06-04 08:22:30] 2025-06-04 03:45:12,433 [wrapper] Pilot exit status: 0
[2025-06-04 08:22:30] 2025-06-04 03:45:12,884 [wrapper] pandaids: 6677576409
[2025-06-04 08:22:30] 2025-06-04 03:45:13,340 [wrapper] cleanup supervisor_pilot  6779 32555
[2025-06-04 08:22:30] 2025-06-04 03:45:13,433 [wrapper] Test setup, not cleaning
[2025-06-04 08:22:30] 2025-06-04 03:45:13,536 [wrapper] apfmon messages muted
[2025-06-04 08:22:30] 2025-06-04 03:45:13,618 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:22:30] 2025-06-04 03:45:13,712 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:22:30]  *** Error codes and diagnostics ***
[2025-06-04 08:22:30]     "exeErrorCode": 0,
[2025-06-04 08:22:30]     "exeErrorDiag": "",
[2025-06-04 08:22:30]     "pilotErrorCode": 0,
[2025-06-04 08:22:30]     "pilotErrorDiag": "",
[2025-06-04 08:22:30]  *** Listing of results directory ***
[2025-06-04 08:22:30] total 390164
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc    495897 Jun  3 11:56 pilot3.tar.gz
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc      5111 Jun  3 12:17 queuedata.json
[2025-06-04 08:22:30] -rwx------. 1 boinc boinc     37140 Jun  3 12:17 runpilot2-wrapper.sh
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc       100 Jun  4 01:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:22:30] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 01:36 run_atlas
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc       105 Jun  4 01:36 job.xml
[2025-06-04 08:22:30] -rw-r--r--. 2 boinc boinc 215536305 Jun  4 01:36 EVNT.45006593._001148.pool.root.1
[2025-06-04 08:22:30] -rw-r--r--. 2 boinc boinc     15093 Jun  4 01:36 start_atlas.sh
[2025-06-04 08:22:30] drwxrwx--x. 2 boinc boinc        68 Jun  4 01:36 shared
[2025-06-04 08:22:30] -rw-r--r--. 2 boinc boinc    508877 Jun  4 01:36 input.tar.gz
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc      6391 Jun  4 01:36 init_data.xml
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc         0 Jun  4 01:36 boinc_lockfile
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc      2525 Jun  4 01:47 pandaJob.out
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc    986077 Jun  4 01:50 agis_schedconf.cvmfs.json
[2025-06-04 08:22:30] drwx------. 4 boinc boinc      4096 Jun  4 01:50 pilot3
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc 177010803 Jun  4 05:42 HITS.45006595._028710.pool.root.1
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc       531 Jun  4 05:42 boinc_task_state.xml
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc      1016 Jun  4 05:43 memory_monitor_summary.json
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc   1603667 Jun  4 05:43 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc    381149 Jun  4 05:43 log.45006595._028710.job.log.tgz.1
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc        95 Jun  4 05:44 pilot_heartbeat.json
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc      7692 Jun  4 05:44 heartbeat.json
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc      4539 Jun  4 05:45 pilotlog.txt
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc   1199541 Jun  4 05:45 log.45006595._028710.job.log.1
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc       357 Jun  4 05:45 output.list
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc       620 Jun  4 05:45 runtime_log
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc   1597440 Jun  4 05:45 result.tar.gz
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc       657 Jun  4 05:45 sbnMDmCtdg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm3HYKDmczQUTn.diag
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc      8659 Jun  4 05:45 runtime_log.err
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc      8192 Jun  4 08:22 boinc_mmap_file
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc        28 Jun  4 08:22 wrapper_checkpoint.txt
[2025-06-04 08:22:30] -rw-r--r--. 1 boinc boinc     20497 Jun  4 08:22 stderr.txt
[2025-06-04 08:22:30] HITS file was successfully produced:
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc 177010803 Jun  4 05:42 shared/HITS.pool.root.1
[2025-06-04 08:22:30]  *** Contents of shared directory: ***
[2025-06-04 08:22:30] total 385428
[2025-06-04 08:22:30] -rw-r--r--. 2 boinc boinc 215536305 Jun  4 01:36 ATLAS.root_0
[2025-06-04 08:22:30] -rw-r--r--. 2 boinc boinc     15093 Jun  4 01:36 start_atlas.sh
[2025-06-04 08:22:30] -rw-r--r--. 2 boinc boinc    508877 Jun  4 01:36 input.tar.gz
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc 177010803 Jun  4 05:42 HITS.pool.root.1
[2025-06-04 08:22:30] -rw-------. 1 boinc boinc   1597440 Jun  4 05:45 result.tar.gz
08:22:32 (22578): run_atlas exited; CPU time 49670.594601
08:22:32 (22578): called boinc_finish(0)

</stderr_txt>
]]>

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