Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:21:11 (2360080): wrapper (7.7.26015): starting
09:21:11 (2360080): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 09:21:11] Arguments: --nthreads 4
[2025-06-05 09:21:11] Threads: 4
[2025-06-05 09:21:11] Checking for CVMFS
[2025-06-05 09:21:11] No cvmfs_config command found, will try listing directly
[2025-06-05 09:21:11] CVMFS is ok
[2025-06-05 09:21:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 09:21:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 09:21:11] Further information can be found at the LHC@home message board.
[2025-06-05 09:21:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 09:21:11] Checking for apptainer binary...
[2025-06-05 09:21:11] which: no apptainer in ((null))
[2025-06-05 09:21:11] apptainer is not installed, using version from CVMFS
[2025-06-05 09:21:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 09:21:11] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2025-06-05 09:21:11] apptainer works
[2025-06-05 09:21:11] Set ATHENA_PROC_NUMBER=4
[2025-06-05 09:21:11] Set ATHENA_CORE_NUMBER=4
[2025-06-05 09:21:11] Starting ATLAS job with PandaID=6677581081
[2025-06-05 09:21:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:18:48]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:18:48] 2025-06-05 10:16:26,891 | WARNING  | process 2370531 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 12:18:48] 2025-06-05 10:16:26,892 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6677581081/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 12:18:48] 2025-06-05 10:16:27,175 | INFO     | number of running child processes to parent process 2370531: 1
[2025-06-05 12:18:48] 2025-06-05 10:16:27,175 | INFO     | maximum number of monitored processes: 6
[2025-06-05 12:18:48] 2025-06-05 10:16:29,678 | INFO     | monitor loop #770: job 0:6677581081 is in state 'finished'
[2025-06-05 12:18:48] 2025-06-05 10:16:29,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 12:18:48] 2025-06-05 10:16:30,230 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 12:18:48] 2025-06-05 10:16:30,231 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6677581081/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 12:18:48] 2025-06-05 10:16:30,231 | INFO     | extracted standard info from prmon json
[2025-06-05 12:18:48] 2025-06-05 10:16:30,231 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:18:48] 2025-06-05 10:16:30,232 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:18:48] 2025-06-05 10:16:30,232 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:18:48] 2025-06-05 10:16:30,232 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:18:48] 2025-06-05 10:16:30,237 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:18:48] 2025-06-05 10:16:30,237 | INFO     | sum of square deviations: 1577789583.0
[2025-06-05 12:18:48] 2025-06-05 10:16:30,238 | INFO     | sum of deviations: -42208672419.49997
[2025-06-05 12:18:48] 2025-06-05 10:16:30,238 | INFO     | mean x: 1749113322.5
[2025-06-05 12:18:48] 2025-06-05 10:16:30,239 | INFO     | mean y: 2428461.784883721
[2025-06-05 12:18:48] 2025-06-05 10:16:30,239 | INFO     | -- intersect: 46794315066.594406
[2025-06-05 12:18:48] 2025-06-05 10:16:30,239 | INFO     | intersect: 46794315066.594406
[2025-06-05 12:18:48] 2025-06-05 10:16:30,239 | INFO     | chi2: 1.9881535891556397
[2025-06-05 12:18:48] 2025-06-05 10:16:30,240 | INFO     | sum of square deviations: 1444149868.0
[2025-06-05 12:18:48] 2025-06-05 10:16:30,241 | INFO     | sum of deviations: -40016543997.99994
[2025-06-05 12:18:48] 2025-06-05 10:16:30,241 | INFO     | mean x: 1749113170.0
[2025-06-05 12:18:48] 2025-06-05 10:16:30,241 | INFO     | mean y: 2430963.97005988
[2025-06-05 12:18:48] 2025-06-05 10:16:30,241 | INFO     | -- intersect: 48469328808.66532
[2025-06-05 12:18:48] 2025-06-05 10:16:30,241 | INFO     | intersect: 48469328808.66532
[2025-06-05 12:18:48] 2025-06-05 10:16:30,242 | INFO     | chi2: 1.9810062773634196
[2025-06-05 12:18:48] 2025-06-05 10:16:30,242 | INFO     | current chi2=1.9810062773634196 (change=0.35949495206029275 %)
[2025-06-05 12:18:48] 2025-06-05 10:16:30,242 | INFO     | right removable region: 166
[2025-06-05 12:18:48] 2025-06-05 10:16:30,242 | INFO     | sum of square deviations: 1444149868.0
[2025-06-05 12:18:48] 2025-06-05 10:16:30,243 | INFO     | sum of deviations: -68768694711.00008
[2025-06-05 12:18:48] 2025-06-05 10:16:30,244 | INFO     | mean x: 1749113475.0
[2025-06-05 12:18:48] 2025-06-05 10:16:30,244 | INFO     | mean y: 2458387.02994012
[2025-06-05 12:18:48] 2025-06-05 10:16:30,244 | INFO     | -- intersect: 83293156425.00633
[2025-06-05 12:18:48] 2025-06-05 10:16:30,244 | INFO     | intersect: 83293156425.00633
[2025-06-05 12:18:48] 2025-06-05 10:16:30,244 | INFO     | chi2: 0.35302418062789753
[2025-06-05 12:18:48] 2025-06-05 10:16:30,245 | INFO     | current chi2=0.35302418062789753 (change=82.24361626015899 %)
[2025-06-05 12:18:48] 2025-06-05 10:16:30,245 | INFO     | sum of square deviations: 1318277740.5
[2025-06-05 12:18:48] 2025-06-05 10:16:30,246 | INFO     | sum of deviations: -63587193274.49999
[2025-06-05 12:18:48] 2025-06-05 10:16:30,246 | INFO     | mean x: 1749113627.5
[2025-06-05 12:18:48] 2025-06-05 10:16:30,246 | INFO     | mean y: 2452083.388888889
[2025-06-05 12:18:48] 2025-06-05 10:16:30,246 | INFO     | -- intersect: 84371036088.09186
[2025-06-05 12:18:48] 2025-06-05 10:16:30,247 | INFO     | intersect: 84371036088.09186
[2025-06-05 12:18:48] 2025-06-05 10:16:30,247 | INFO     | chi2: 0.3500284790016023
[2025-06-05 12:18:48] 2025-06-05 10:16:30,247 | INFO     | current chi2=0.3500284790016023 (change=0.8485825591230114 %)
[2025-06-05 12:18:48] 2025-06-05 10:16:30,247 | INFO     | left removable region: 20
[2025-06-05 12:18:48] 2025-06-05 10:16:30,248 | INFO     | sum of square deviations: 964976232.5
[2025-06-05 12:18:48] 2025-06-05 10:16:30,248 | INFO     | sum of deviations: -47675268152.99999
[2025-06-05 12:18:48] 2025-06-05 10:16:30,249 | INFO     | mean x: 1749113749.5
[2025-06-05 12:18:48] 2025-06-05 10:16:30,249 | INFO     | mean y: 2437844.7808219176
[2025-06-05 12:18:48] 2025-06-05 10:16:30,249 | INFO     | -- intersect: 86418521711.9156
[2025-06-05 12:18:48] 2025-06-05 10:16:30,249 | INFO     | intersect: 86418521711.9156
[2025-06-05 12:18:48] 2025-06-05 10:16:30,249 | INFO     | chi2: 0.3291062005541563
[2025-06-05 12:18:48] 2025-06-05 10:16:30,250 | INFO     | -- intersect: 86418521711.9156
[2025-06-05 12:18:48] 2025-06-05 10:16:30,250 | INFO     | current memory leak: -49.41 B/s (using 146 data points, chi2=0.33)
[2025-06-05 12:18:48] 2025-06-05 10:16:30,250 | INFO     | ..............................
[2025-06-05 12:18:48] 2025-06-05 10:16:30,251 | INFO     | . Timing measurements:
[2025-06-05 12:18:48] 2025-06-05 10:16:30,251 | INFO     | . get job = 0 s
[2025-06-05 12:18:48] 2025-06-05 10:16:30,251 | INFO     | . initial setup = 1 s
[2025-06-05 12:18:48] 2025-06-05 10:16:30,251 | INFO     | . payload setup = 6 s
[2025-06-05 12:18:48] 2025-06-05 10:16:30,251 | INFO     | . stage-in = 0 s
[2025-06-05 12:18:48] 2025-06-05 10:16:30,251 | INFO     | . payload execution = 10474 s
[2025-06-05 12:18:48] 2025-06-05 10:16:30,251 | INFO     | . stage-out = 0 s
[2025-06-05 12:18:48] 2025-06-05 10:16:30,251 | INFO     | . log creation = 0 s
[2025-06-05 12:18:48] 2025-06-05 10:16:30,252 | INFO     | ..............................
[2025-06-05 12:18:48] 2025-06-05 10:16:30,466 | INFO     | 
[2025-06-05 12:18:48] 2025-06-05 10:16:30,466 | INFO     | job summary report
[2025-06-05 12:18:48] 2025-06-05 10:16:30,466 | INFO     | --------------------------------------------------
[2025-06-05 12:18:48] 2025-06-05 10:16:30,466 | INFO     | PanDA job id: 6677581081
[2025-06-05 12:18:48] 2025-06-05 10:16:30,466 | INFO     | task id: 45006595
[2025-06-05 12:18:48] 2025-06-05 10:16:30,467 | INFO     | errors: (none)
[2025-06-05 12:18:48] 2025-06-05 10:16:30,467 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:18:48] 2025-06-05 10:16:30,467 | INFO     | pilot state: finished 
[2025-06-05 12:18:48] 2025-06-05 10:16:30,467 | INFO     | transexitcode: 0
[2025-06-05 12:18:48] 2025-06-05 10:16:30,467 | INFO     | exeerrorcode: 0
[2025-06-05 12:18:48] 2025-06-05 10:16:30,467 | INFO     | exeerrordiag: 
[2025-06-05 12:18:48] 2025-06-05 10:16:30,467 | INFO     | exitcode: 0
[2025-06-05 12:18:48] 2025-06-05 10:16:30,467 | INFO     | exitmsg: OK
[2025-06-05 12:18:48] 2025-06-05 10:16:30,468 | INFO     | cpuconsumptiontime: 40197 s
[2025-06-05 12:18:48] 2025-06-05 10:16:30,468 | INFO     | nevents: 400
[2025-06-05 12:18:48] 2025-06-05 10:16:30,468 | INFO     | neventsw: 0
[2025-06-05 12:18:48] 2025-06-05 10:16:30,468 | INFO     | pid: 2370531
[2025-06-05 12:18:48] 2025-06-05 10:16:30,468 | INFO     | pgrp: 2370531
[2025-06-05 12:18:48] 2025-06-05 10:16:30,468 | INFO     | corecount: 4
[2025-06-05 12:18:48] 2025-06-05 10:16:30,468 | INFO     | event service: False
[2025-06-05 12:18:48] 2025-06-05 10:16:30,468 | INFO     | sizes: {0: 2397182, 1: 2397381, 5: 2397587, 12: 2397643, 10484: 2426274, 10485: 2435237, 10486: 2435421, 10493: 2435591}
[2025-06-05 12:18:48] 2025-06-05 10:16:30,468 | INFO     | --------------------------------------------------
[2025-06-05 12:18:48] 2025-06-05 10:16:30,469 | INFO     | 
[2025-06-05 12:18:48] 2025-06-05 10:16:30,469 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2025-06-05 12:18:48] 2025-06-05 10:16:30,491 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,492 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,492 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,492 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,492 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,492 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,492 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,492 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,492 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,493 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,493 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,493 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,493 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,493 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,493 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,493 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,494 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,494 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:18:48] 2025-06-05 10:16:30,494 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,494 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:18:48] 2025-06-05 10:16:30,494 | INFO     | job 6677581081 has completed (purged errors)
[2025-06-05 12:18:48] 2025-06-05 10:16:30,494 | INFO     | overall cleanup function is called
[2025-06-05 12:18:48] 2025-06-05 10:16:31,502 | INFO     | --- collectZombieJob: --- 10, [2370531]
[2025-06-05 12:18:48] 2025-06-05 10:16:31,503 | INFO     | zombie collector waiting for pid 2370531
[2025-06-05 12:18:48] 2025-06-05 10:16:31,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:18:48] 2025-06-05 10:16:31,503 | INFO     | collected zombie processes
[2025-06-05 12:18:48] 2025-06-05 10:16:31,503 | INFO     | will attempt to kill all subprocesses of pid=2370531
[2025-06-05 12:18:48] 2025-06-05 10:16:31,817 | INFO     | process IDs to be killed: [2370531] (in reverse order)
[2025-06-05 12:18:48] 2025-06-05 10:16:31,901 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:18:48] 2025-06-05 10:16:31,901 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:18:48] 2025-06-05 10:16:31,910 | INFO     | did not find any defunct processes belonging to 2370531
[2025-06-05 12:18:48] 2025-06-05 10:16:31,918 | INFO     | did not find any defunct processes belonging to 2370531
[2025-06-05 12:18:48] 2025-06-05 10:16:31,918 | INFO     | ready for new job
[2025-06-05 12:18:48] 2025-06-05 10:16:31,919 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:18:48] 2025-06-05 10:16:31,921 | INFO     | **************************************
[2025-06-05 12:18:48] 2025-06-05 10:16:31,921 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:18:48] 2025-06-05 10:16:31,921 | INFO     | **************************************
[2025-06-05 12:18:48] 2025-06-05 10:16:31,921 | INFO     | 
[2025-06-05 12:18:48] 2025-06-05 10:16:31,924 | INFO     | architecture information:
[2025-06-05 12:18:48] 2025-06-05 10:16:31,924 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:18:48] 2025-06-05 10:16:31,938 | INFO     | cat /etc/os-release:
[2025-06-05 12:18:48] NAME="CentOS Linux"
[2025-06-05 12:18:48] VERSION="7 (Core)"
[2025-06-05 12:18:48] ID="centos"
[2025-06-05 12:18:48] ID_LIKE="rhel fedora"
[2025-06-05 12:18:48] VERSION_ID="7"
[2025-06-05 12:18:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:18:48] ANSI_COLOR="0;31"
[2025-06-05 12:18:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:18:48] HOME_URL="https://www.centos.org/"
[2025-06-05 12:18:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:18:48] 
[2025-06-05 12:18:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:18:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:18:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:18:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:18:48] 
[2025-06-05 12:18:48] 2025-06-05 10:16:31,939 | INFO     | **************************************
[2025-06-05 12:18:48] 2025-06-05 10:16:32,441 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2025-06-05 12:18:48] 2025-06-05 10:16:32,456 | INFO     | sufficient remaining disk space (1657701138432 B)
[2025-06-05 12:18:48] 2025-06-05 10:16:32,456 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:18:48] 2025-06-05 10:16:32,457 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:18:48] 2025-06-05 10:16:32,457 | INFO     | update_server=False
[2025-06-05 12:18:48] 2025-06-05 10:16:32,457 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:18:48] 2025-06-05 10:16:32,457 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 12:18:48] 2025-06-05 10:16:32,458 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:18:48] 2025-06-05 10:16:32,458 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:18:48] 2025-06-05 10:16:32,458 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:18:48] 2025-06-05 10:16:32,705 | INFO     | all payload control threads have been joined
[2025-06-05 12:18:48] 2025-06-05 10:16:32,726 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:18:48] 2025-06-05 10:16:33,147 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:18:48] 2025-06-05 10:16:33,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:18:48] 2025-06-05 10:16:33,186 | INFO     | aborting loop
[2025-06-05 12:18:48] 2025-06-05 10:16:33,402 | INFO     | all job control threads have been joined
[2025-06-05 12:18:48] 2025-06-05 10:16:33,462 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:33,471 | INFO     | all data control threads have been joined
[2025-06-05 12:18:48] 2025-06-05 10:16:33,483 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:33,563 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:33,711 | INFO     | [payload] control thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:33,758 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:34,071 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:34,191 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:34,407 | INFO     | [job] control thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:34,476 | INFO     | [data] control thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:34,611 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:34,642 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:34,731 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:34,804 | INFO     | [job] validate thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:35,376 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:18:48] 2025-06-05 10:16:36,377 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:37,150 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:43,374 | INFO     | job.realtimelogging is not enabled
[2025-06-05 12:18:48] 2025-06-05 10:16:44,380 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:18:48] 2025-06-05 10:16:44,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23237901424448)>', '<ExcThread(monitor, started 23237662570240)>']
[2025-06-05 12:18:48] 2025-06-05 10:16:45,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:18:48] 2025-06-05 10:16:45,508 | INFO     | [monitor] control thread has ended
[2025-06-05 12:18:48] 2025-06-05 10:16:49,540 | INFO     | all workflow threads have been joined
[2025-06-05 12:18:48] 2025-06-05 10:16:49,540 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:18:48] 2025-06-05 10:16:49,541 | INFO     | traces error code: 0
[2025-06-05 12:18:48] 2025-06-05 10:16:49,541 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:18:48] 2025-06-05 10:16:49,672 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:18:48] 2025-06-05 10:16:49,674 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:18:48] 2025-06-05 10:16:49,677 [wrapper] pilotpid: 2363675
[2025-06-05 12:18:48] 2025-06-05 10:16:49,679 [wrapper] Pilot exit status: 0
[2025-06-05 12:18:48] 2025-06-05 10:16:49,688 [wrapper] pandaids: 6677581081
[2025-06-05 12:18:48] 2025-06-05 10:16:49,740 [wrapper] cleanup supervisor_pilot 2540901 2363676
[2025-06-05 12:18:48] 2025-06-05 10:16:49,743 [wrapper] Test setup, not cleaning
[2025-06-05 12:18:48] 2025-06-05 10:16:49,745 [wrapper] apfmon messages muted
[2025-06-05 12:18:48] 2025-06-05 10:16:49,747 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:18:48] 2025-06-05 10:16:49,750 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:18:48]  *** Error codes and diagnostics ***
[2025-06-05 12:18:48]     "exeErrorCode": 0,
[2025-06-05 12:18:48]     "exeErrorDiag": "",
[2025-06-05 12:18:48]     "pilotErrorCode": 0,
[2025-06-05 12:18:48]     "pilotErrorDiag": "",
[2025-06-05 12:18:48]  *** Listing of results directory ***
[2025-06-05 12:18:48] total 392532
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc    495897 Jun  3 12:57 pilot3.tar.gz
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc      5111 Jun  3 13:22 queuedata.json
[2025-06-05 12:18:48] -rwx------ 1 boinc boinc     37140 Jun  3 13:23 runpilot2-wrapper.sh
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc       100 Jun  5 09:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:18:48] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 09:21 run_atlas
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc       105 Jun  5 09:21 job.xml
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc      6422 Jun  5 09:21 init_data.xml
[2025-06-05 12:18:48] -rw-r--r-- 2 boinc boinc 215812318 Jun  5 09:21 EVNT.45006593._001226.pool.root.1
[2025-06-05 12:18:48] -rw-r--r-- 2 boinc boinc     15093 Jun  5 09:21 start_atlas.sh
[2025-06-05 12:18:48] drwxrwx--x 2 boinc boinc      4096 Jun  5 09:21 shared
[2025-06-05 12:18:48] -rw-r--r-- 2 boinc boinc    508882 Jun  5 09:21 input.tar.gz
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc         0 Jun  5 09:21 boinc_lockfile
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc      2525 Jun  5 09:21 pandaJob.out
[2025-06-05 12:18:48] -rw------- 1 boinc boinc    983087 Jun  5 09:21 agis_schedconf.cvmfs.json
[2025-06-05 12:18:48] -rw------- 1 boinc boinc   1598969 Jun  5 09:21 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:18:48] drwx------ 4 boinc boinc      4096 Jun  5 09:21 pilot3
[2025-06-05 12:18:48] -rw------- 1 boinc boinc 179705917 Jun  5 12:15 HITS.45006595._030594.pool.root.1
[2025-06-05 12:18:48] -rw------- 1 boinc boinc        95 Jun  5 12:16 pilot_heartbeat.json
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc       528 Jun  5 12:16 boinc_task_state.xml
[2025-06-05 12:18:48] -rw------- 1 boinc boinc      1038 Jun  5 12:16 memory_monitor_summary.json
[2025-06-05 12:18:48] -rw------- 1 boinc boinc    309611 Jun  5 12:16 log.45006595._030594.job.log.tgz.1
[2025-06-05 12:18:48] -rw------- 1 boinc boinc      7735 Jun  5 12:16 heartbeat.json
[2025-06-05 12:18:48] -rw------- 1 boinc boinc      4559 Jun  5 12:16 pilotlog.txt
[2025-06-05 12:18:48] -rw------- 1 boinc boinc    991767 Jun  5 12:16 log.45006595._030594.job.log.1
[2025-06-05 12:18:48] -rw------- 1 boinc boinc       357 Jun  5 12:16 output.list
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc       620 Jun  5 12:16 runtime_log
[2025-06-05 12:18:48] -rw------- 1 boinc boinc   1320960 Jun  5 12:16 result.tar.gz
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc      9026 Jun  5 12:16 runtime_log.err
[2025-06-05 12:18:48] -rw------- 1 boinc boinc       665 Jun  5 12:16 928MDmZueg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfljKDmTZw3Cn.diag
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc      8192 Jun  5 12:18 boinc_mmap_file
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc        26 Jun  5 12:18 wrapper_checkpoint.txt
[2025-06-05 12:18:48] -rw-r--r-- 1 boinc boinc     20889 Jun  5 12:18 stderr.txt
[2025-06-05 12:18:48] HITS file was successfully produced:
[2025-06-05 12:18:48] -rw------- 1 boinc boinc 179705917 Jun  5 12:15 shared/HITS.pool.root.1
[2025-06-05 12:18:48]  *** Contents of shared directory: ***
[2025-06-05 12:18:48] total 388064
[2025-06-05 12:18:48] -rw-r--r-- 2 boinc boinc 215812318 Jun  5 09:21 ATLAS.root_0
[2025-06-05 12:18:48] -rw-r--r-- 2 boinc boinc     15093 Jun  5 09:21 start_atlas.sh
[2025-06-05 12:18:48] -rw-r--r-- 2 boinc boinc    508882 Jun  5 09:21 input.tar.gz
[2025-06-05 12:18:48] -rw------- 1 boinc boinc 179705917 Jun  5 12:15 HITS.pool.root.1
[2025-06-05 12:18:48] -rw------- 1 boinc boinc   1320960 Jun  5 12:16 result.tar.gz
12:18:50 (2360080): run_atlas exited; CPU time 40567.806941
12:18:50 (2360080): called boinc_finish(0)

</stderr_txt>
]]>

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