Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:08:24 (1374): wrapper (7.7.26015): starting
00:08:24 (1374): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 00:08:24] Arguments: --nthreads 8
[2025-06-04 00:08:24] Threads: 8
[2025-06-04 00:08:24] Checking for CVMFS
[2025-06-04 00:08:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 00:08:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 00:08:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 00:08:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 00:08:25] 2.11.2.0 28231 32336 89140 146757 1 114 19157199 25165824 3360 130560 0 17043680 99.793 19415218 2215 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 00:08:25] CVMFS is ok
[2025-06-04 00:08:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 00:08:25] Checking for apptainer binary...
[2025-06-04 00:08:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 00:08:25] Running /usr/bin/apptainer --version
[2025-06-04 00:08:25] apptainer version 1.3.2-1.el7
[2025-06-04 00:08:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 00:08:27] cg-vwn282.simple-grid.lan
[2025-06-04 00:08:27] apptainer works
[2025-06-04 00:08:27] Set ATHENA_PROC_NUMBER=8
[2025-06-04 00:08:27] Set ATHENA_CORE_NUMBER=8
[2025-06-04 00:08:27] Starting ATLAS job with PandaID=6677581083
[2025-06-04 00:08:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:43:30]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:43:30] 2025-06-04 01:41:54,318 | INFO     | -- intersect: 6198775191.82491
[2025-06-04 03:43:30] 2025-06-04 01:41:54,319 | INFO     | intersect: 6198775191.82491
[2025-06-04 03:43:30] 2025-06-04 01:41:54,319 | INFO     | chi2: 0.08740300701222621
[2025-06-04 03:43:30] 2025-06-04 01:41:54,319 | INFO     | current chi2=0.08740300701222621 (change=94.52666247910486 %)
[2025-06-04 03:43:30] 2025-06-04 01:41:54,319 | INFO     | sum of square deviations: 2370641658.0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,321 | INFO     | sum of deviations: -4460967271.000003
[2025-06-04 03:43:30] 2025-06-04 01:41:54,321 | INFO     | mean x: 1748995183.0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,321 | INFO     | mean y: 2489975.0964467004
[2025-06-04 03:43:30] 2025-06-04 01:41:54,321 | INFO     | -- intersect: 3293670758.2275515
[2025-06-04 03:43:30] 2025-06-04 01:41:54,321 | INFO     | intersect: 3293670758.2275515
[2025-06-04 03:43:30] 2025-06-04 01:41:54,321 | INFO     | chi2: 0.06310047172615237
[2025-06-04 03:43:30] 2025-06-04 01:41:54,322 | INFO     | current chi2=0.06310047172615237 (change=27.805147805354487 %)
[2025-06-04 03:43:30] 2025-06-04 01:41:54,322 | INFO     | sum of square deviations: 2194675568.0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,323 | INFO     | sum of deviations: 3030534869.500001
[2025-06-04 03:43:30] 2025-06-04 01:41:54,323 | INFO     | mean x: 1748995335.5
[2025-06-04 03:43:30] 2025-06-04 01:41:54,324 | INFO     | mean y: 2483478.8697916665
[2025-06-04 03:43:30] 2025-06-04 01:41:54,324 | INFO     | -- intersect: -2412630366.7068605
[2025-06-04 03:43:30] 2025-06-04 01:41:54,324 | INFO     | intersect: -2412630366.7068605
[2025-06-04 03:43:30] 2025-06-04 01:41:54,324 | INFO     | chi2: 0.012928303266450867
[2025-06-04 03:43:30] 2025-06-04 01:41:54,324 | INFO     | current chi2=0.012928303266450867 (change=79.51155845148357 %)
[2025-06-04 03:43:30] 2025-06-04 01:41:54,340 | INFO     | sum of square deviations: 2027639878.0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,341 | INFO     | sum of deviations: 4015287302.0000005
[2025-06-04 03:43:30] 2025-06-04 01:41:54,342 | INFO     | mean x: 1748995488.0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,342 | INFO     | mean y: 2482611.165775401
[2025-06-04 03:43:30] 2025-06-04 01:41:54,342 | INFO     | -- intersect: -3461011794.531494
[2025-06-04 03:43:30] 2025-06-04 01:41:54,342 | INFO     | intersect: -3461011794.531494
[2025-06-04 03:43:30] 2025-06-04 01:41:54,342 | INFO     | chi2: 0.00024615888363014194
[2025-06-04 03:43:30] 2025-06-04 01:41:54,343 | INFO     | current chi2=0.00024615888363014194 (change=98.09596914183683 %)
[2025-06-04 03:43:30] 2025-06-04 01:41:54,343 | INFO     | sum of square deviations: 1869302025.5
[2025-06-04 03:43:30] 2025-06-04 01:41:54,344 | INFO     | sum of deviations: 3460178670.5
[2025-06-04 03:43:30] 2025-06-04 01:41:54,345 | INFO     | mean x: 1748995640.5
[2025-06-04 03:43:30] 2025-06-04 01:41:54,345 | INFO     | mean y: 2483145.368131868
[2025-06-04 03:43:30] 2025-06-04 01:41:54,345 | INFO     | -- intersect: -3235001930.611949
[2025-06-04 03:43:30] 2025-06-04 01:41:54,345 | INFO     | intersect: -3235001930.611949
[2025-06-04 03:43:30] 2025-06-04 01:41:54,345 | INFO     | chi2: 0.00017947384408321924
[2025-06-04 03:43:30] 2025-06-04 01:41:54,346 | INFO     | current chi2=0.00017947384408321924 (change=27.090242920957568 %)
[2025-06-04 03:43:30] 2025-06-04 01:41:54,346 | INFO     | sum of square deviations: 1719429448.0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,347 | INFO     | sum of deviations: 3004590013.9999995
[2025-06-04 03:43:30] 2025-06-04 01:41:54,347 | INFO     | mean x: 1748995793.0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,348 | INFO     | mean y: 2483608.7853107345
[2025-06-04 03:43:30] 2025-06-04 01:41:54,348 | INFO     | -- intersect: -3053771650.9395475
[2025-06-04 03:43:30] 2025-06-04 01:41:54,348 | INFO     | intersect: -3053771650.9395475
[2025-06-04 03:43:30] 2025-06-04 01:41:54,348 | INFO     | chi2: 0.00014179689911903326
[2025-06-04 03:43:30] 2025-06-04 01:41:54,348 | INFO     | current chi2=0.00014179689911903326 (change=20.993000487979607 %)
[2025-06-04 03:43:30] 2025-06-04 01:41:54,348 | INFO     | left removable region: 60
[2025-06-04 03:43:30] 2025-06-04 01:41:54,349 | INFO     | sum of square deviations: 869188390.0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,350 | INFO     | sum of deviations: 1169897771.9999998
[2025-06-04 03:43:30] 2025-06-04 01:41:54,350 | INFO     | mean x: 1748996525.0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,350 | INFO     | mean y: 2485206.1631205673
[2025-06-04 03:43:30] 2025-06-04 01:41:54,350 | INFO     | -- intersect: -2351604150.498951
[2025-06-04 03:43:30] 2025-06-04 01:41:54,350 | INFO     | intersect: -2351604150.498951
[2025-06-04 03:43:30] 2025-06-04 01:41:54,351 | INFO     | chi2: 2.1587580812153294e-05
[2025-06-04 03:43:30] 2025-06-04 01:41:54,351 | INFO     | -- intersect: -2351604150.498951
[2025-06-04 03:43:30] 2025-06-04 01:41:54,351 | INFO     | current memory leak: 1.35 B/s (using 141 data points, chi2=0.00)
[2025-06-04 03:43:30] 2025-06-04 01:41:54,352 | INFO     | ..............................
[2025-06-04 03:43:30] 2025-06-04 01:41:54,352 | INFO     | . Timing measurements:
[2025-06-04 03:43:30] 2025-06-04 01:41:54,352 | INFO     | . get job = 0 s
[2025-06-04 03:43:30] 2025-06-04 01:41:54,352 | INFO     | . initial setup = 2 s
[2025-06-04 03:43:30] 2025-06-04 01:41:54,352 | INFO     | . payload setup = 14 s
[2025-06-04 03:43:30] 2025-06-04 01:41:54,352 | INFO     | . stage-in = 0 s
[2025-06-04 03:43:30] 2025-06-04 01:41:54,361 | INFO     | . payload execution = 12647 s
[2025-06-04 03:43:30] 2025-06-04 01:41:54,361 | INFO     | . stage-out = 4 s
[2025-06-04 03:43:30] 2025-06-04 01:41:54,361 | INFO     | . log creation = 2 s
[2025-06-04 03:43:30] 2025-06-04 01:41:54,361 | INFO     | ..............................
[2025-06-04 03:43:30] 2025-06-04 01:41:54,729 | INFO     | 
[2025-06-04 03:43:30] 2025-06-04 01:41:54,729 | INFO     | job summary report
[2025-06-04 03:43:30] 2025-06-04 01:41:54,729 | INFO     | --------------------------------------------------
[2025-06-04 03:43:30] 2025-06-04 01:41:54,729 | INFO     | PanDA job id: 6677581083
[2025-06-04 03:43:30] 2025-06-04 01:41:54,729 | INFO     | task id: 45006595
[2025-06-04 03:43:30] 2025-06-04 01:41:54,729 | INFO     | errors: (none)
[2025-06-04 03:43:30] 2025-06-04 01:41:54,729 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:43:30] 2025-06-04 01:41:54,729 | INFO     | pilot state: finished 
[2025-06-04 03:43:30] 2025-06-04 01:41:54,730 | INFO     | transexitcode: 0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,730 | INFO     | exeerrorcode: 0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,730 | INFO     | exeerrordiag: 
[2025-06-04 03:43:30] 2025-06-04 01:41:54,730 | INFO     | exitcode: 0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,730 | INFO     | exitmsg: OK
[2025-06-04 03:43:30] 2025-06-04 01:41:54,730 | INFO     | cpuconsumptiontime: 48259 s
[2025-06-04 03:43:30] 2025-06-04 01:41:54,730 | INFO     | nevents: 400
[2025-06-04 03:43:30] 2025-06-04 01:41:54,730 | INFO     | neventsw: 0
[2025-06-04 03:43:30] 2025-06-04 01:41:54,730 | INFO     | pid: 17601
[2025-06-04 03:43:30] 2025-06-04 01:41:54,730 | INFO     | pgrp: 17601
[2025-06-04 03:43:30] 2025-06-04 01:41:54,730 | INFO     | corecount: 8
[2025-06-04 03:43:30] 2025-06-04 01:41:54,731 | INFO     | event service: False
[2025-06-04 03:43:30] 2025-06-04 01:41:54,731 | INFO     | sizes: {0: 2405013, 1: 2405212, 9: 2405418, 12: 2405446, 12665: 2434609, 12670: 2443578, 12671: 2443762, 12762: 2443932}
[2025-06-04 03:43:30] 2025-06-04 01:41:54,731 | INFO     | --------------------------------------------------
[2025-06-04 03:43:30] 2025-06-04 01:41:54,731 | INFO     | 
[2025-06-04 03:43:30] 2025-06-04 01:41:54,731 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-04 03:43:30] 2025-06-04 01:41:55,283 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,283 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,283 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,283 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,283 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,283 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,283 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,283 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,284 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,284 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,284 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,284 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,284 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,284 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,284 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,284 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,284 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:43:30] 2025-06-04 01:41:55,284 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,285 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:43:30] 2025-06-04 01:41:55,285 | INFO     | job 6677581083 has completed (purged errors)
[2025-06-04 03:43:30] 2025-06-04 01:41:55,285 | INFO     | overall cleanup function is called
[2025-06-04 03:43:30] 2025-06-04 01:41:56,294 | INFO     | --- collectZombieJob: --- 10, [17601]
[2025-06-04 03:43:30] 2025-06-04 01:41:56,294 | INFO     | zombie collector waiting for pid 17601
[2025-06-04 03:43:30] 2025-06-04 01:41:56,294 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:43:30] 2025-06-04 01:41:56,294 | INFO     | collected zombie processes
[2025-06-04 03:43:30] 2025-06-04 01:41:56,294 | INFO     | will attempt to kill all subprocesses of pid=17601
[2025-06-04 03:43:30] 2025-06-04 01:41:56,418 | INFO     | process IDs to be killed: [17601] (in reverse order)
[2025-06-04 03:43:30] 2025-06-04 01:41:57,170 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:43:30] 2025-06-04 01:41:57,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:43:30] 2025-06-04 01:41:57,174 | INFO     | did not find any defunct processes belonging to 17601
[2025-06-04 03:43:30] 2025-06-04 01:41:57,186 | INFO     | did not find any defunct processes belonging to 17601
[2025-06-04 03:43:30] 2025-06-04 01:41:57,187 | INFO     | ready for new job
[2025-06-04 03:43:30] 2025-06-04 01:41:57,187 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:43:30] 2025-06-04 01:41:57,202 | INFO     | **************************************
[2025-06-04 03:43:30] 2025-06-04 01:41:57,202 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:43:30] 2025-06-04 01:41:57,202 | INFO     | **************************************
[2025-06-04 03:43:30] 2025-06-04 01:41:57,202 | INFO     | 
[2025-06-04 03:43:30] 2025-06-04 01:41:57,203 | INFO     | pilot is running in a VM
[2025-06-04 03:43:30] 2025-06-04 01:41:57,203 | INFO     | architecture information:
[2025-06-04 03:43:30] 2025-06-04 01:41:57,222 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:43:30] 2025-06-04 01:41:57,503 | INFO     | PID=5077 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 03:43:30] 2025-06-04 01:41:57,504 | INFO     | .. there are 9 such processes running
[2025-06-04 03:43:30] 2025-06-04 01:41:57,563 | INFO     | cat /etc/os-release:
[2025-06-04 03:43:30] NAME="CentOS Linux"
[2025-06-04 03:43:30] VERSION="7 (Core)"
[2025-06-04 03:43:30] ID="centos"
[2025-06-04 03:43:30] ID_LIKE="rhel fedora"
[2025-06-04 03:43:30] VERSION_ID="7"
[2025-06-04 03:43:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:43:30] ANSI_COLOR="0;31"
[2025-06-04 03:43:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:43:30] HOME_URL="https://www.centos.org/"
[2025-06-04 03:43:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:43:30] 
[2025-06-04 03:43:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:43:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:43:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:43:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:43:30] 
[2025-06-04 03:43:30] 2025-06-04 01:41:57,563 | INFO     | **************************************
[2025-06-04 03:43:30] 2025-06-04 01:41:58,066 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-04 03:43:30] 2025-06-04 01:41:58,270 | INFO     | sufficient remaining disk space (497045995520 B)
[2025-06-04 03:43:30] 2025-06-04 01:41:58,271 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:43:30] 2025-06-04 01:41:58,271 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:43:30] 2025-06-04 01:41:58,271 | INFO     | update_server=False
[2025-06-04 03:43:30] 2025-06-04 01:41:58,271 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:43:30] 2025-06-04 01:41:58,272 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:43:30] 2025-06-04 01:41:58,280 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 03:43:30] 2025-06-04 01:41:58,280 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:43:30] 2025-06-04 01:41:58,280 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:43:30] 2025-06-04 01:41:58,281 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:43:30] 2025-06-04 01:41:58,440 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:43:30] 2025-06-04 01:41:58,440 | INFO     | aborting loop
[2025-06-04 03:43:30] 2025-06-04 01:41:58,593 | INFO     | all data control threads have been joined
[2025-06-04 03:43:30] 2025-06-04 01:41:59,271 | INFO     | all job control threads have been joined
[2025-06-04 03:43:30] 2025-06-04 01:41:59,276 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:41:59,400 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:41:59,446 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:41:59,480 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:41:59,487 | INFO     | all payload control threads have been joined
[2025-06-04 03:43:30] 2025-06-04 01:41:59,599 | INFO     | [data] control thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:41:59,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:43:30] 2025-06-04 01:41:59,618 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:42:00,046 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:42:00,085 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:43:30] 2025-06-04 01:42:00,098 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:42:00,197 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:42:00,277 | INFO     | [job] control thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:42:00,279 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:42:00,493 | INFO     | [payload] control thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:42:00,584 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:42:00,612 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:42:00,731 | INFO     | [job] validate thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:42:04,096 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:43:30] 2025-06-04 01:42:04,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140356500330304)>', '<ExcThread(monitor, started 140355706025728)>']
[2025-06-04 03:43:30] 2025-06-04 01:42:05,323 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:43:30] 2025-06-04 01:42:05,323 | INFO     | [monitor] control thread has ended
[2025-06-04 03:43:30] 2025-06-04 01:42:09,386 | INFO     | all workflow threads have been joined
[2025-06-04 03:43:30] 2025-06-04 01:42:09,386 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:43:30] 2025-06-04 01:42:09,386 | INFO     | traces error code: 0
[2025-06-04 03:43:30] 2025-06-04 01:42:09,386 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:43:30] 2025-06-04 01:42:09,781 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:43:30] 2025-06-04 01:42:09,878 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:43:30] 2025-06-04 01:42:09,964 [wrapper] pilotpid: 5077
[2025-06-04 03:43:30] 2025-06-04 01:42:10,034 [wrapper] Pilot exit status: 0
[2025-06-04 03:43:30] 2025-06-04 01:42:10,473 [wrapper] pandaids: 6677581083
[2025-06-04 03:43:30] 2025-06-04 01:42:11,438 [wrapper] cleanup supervisor_pilot  3200 5078
[2025-06-04 03:43:30] 2025-06-04 01:42:11,476 [wrapper] Test setup, not cleaning
[2025-06-04 03:43:30] 2025-06-04 01:42:11,522 [wrapper] apfmon messages muted
[2025-06-04 03:43:30] 2025-06-04 01:42:11,608 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:43:30] 2025-06-04 01:42:11,710 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:43:30]  *** Error codes and diagnostics ***
[2025-06-04 03:43:30]     "exeErrorCode": 0,
[2025-06-04 03:43:30]     "exeErrorDiag": "",
[2025-06-04 03:43:30]     "pilotErrorCode": 0,
[2025-06-04 03:43:30]     "pilotErrorDiag": "",
[2025-06-04 03:43:30]  *** Listing of results directory ***
[2025-06-04 03:43:30] total 388240
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc    495897 Jun  3 12:57 pilot3.tar.gz
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc      5111 Jun  3 13:22 queuedata.json
[2025-06-04 03:43:30] -rwx------. 1 boinc boinc     37140 Jun  3 13:23 runpilot2-wrapper.sh
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc       100 Jun  4 00:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:43:30] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 00:08 run_atlas
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc       105 Jun  4 00:08 job.xml
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc      6391 Jun  4 00:08 init_data.xml
[2025-06-04 03:43:30] -rw-r--r--. 2 boinc boinc 215812318 Jun  4 00:08 EVNT.45006593._001226.pool.root.1
[2025-06-04 03:43:30] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:08 start_atlas.sh
[2025-06-04 03:43:30] drwxrwx--x. 2 boinc boinc        68 Jun  4 00:08 shared
[2025-06-04 03:43:30] -rw-r--r--. 2 boinc boinc    508884 Jun  4 00:08 input.tar.gz
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc         0 Jun  4 00:08 boinc_lockfile
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc      2525 Jun  4 00:08 pandaJob.out
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc    986869 Jun  4 00:08 agis_schedconf.cvmfs.json
[2025-06-04 03:43:30] drwx------. 4 boinc boinc      4096 Jun  4 00:08 pilot3
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc 174908802 Jun  4 03:39 HITS.45006595._030596.pool.root.1
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc       531 Jun  4 03:39 boinc_task_state.xml
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc      1018 Jun  4 03:40 memory_monitor_summary.json
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc   1603667 Jun  4 03:40 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc    385478 Jun  4 03:40 log.45006595._030596.job.log.tgz.1
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc        95 Jun  4 03:41 pilot_heartbeat.json
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc      7691 Jun  4 03:41 heartbeat.json
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc      4930 Jun  4 03:42 pilotlog.txt
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc   1119941 Jun  4 03:42 log.45006595._030596.job.log.1
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc       357 Jun  4 03:42 output.list
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc       620 Jun  4 03:42 runtime_log
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc   1525760 Jun  4 03:42 result.tar.gz
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc      8659 Jun  4 03:42 runtime_log.err
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc       657 Jun  4 03:42 4GBNDmZueg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhljKDm6MnBZm.diag
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc      8192 Jun  4 03:43 boinc_mmap_file
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc        28 Jun  4 03:43 wrapper_checkpoint.txt
[2025-06-04 03:43:30] -rw-r--r--. 1 boinc boinc     20655 Jun  4 03:43 stderr.txt
[2025-06-04 03:43:30] HITS file was successfully produced:
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc 174908802 Jun  4 03:39 shared/HITS.pool.root.1
[2025-06-04 03:43:30]  *** Contents of shared directory: ***
[2025-06-04 03:43:30] total 383576
[2025-06-04 03:43:30] -rw-r--r--. 2 boinc boinc 215812318 Jun  4 00:08 ATLAS.root_0
[2025-06-04 03:43:30] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:08 start_atlas.sh
[2025-06-04 03:43:30] -rw-r--r--. 2 boinc boinc    508884 Jun  4 00:08 input.tar.gz
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc 174908802 Jun  4 03:39 HITS.pool.root.1
[2025-06-04 03:43:30] -rw-------. 1 boinc boinc   1525760 Jun  4 03:42 result.tar.gz
03:43:32 (1374): run_atlas exited; CPU time 48423.624791
03:43:32 (1374): called boinc_finish(0)

</stderr_txt>
]]>

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