Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:09:19 (3079986): wrapper (7.7.26015): starting
10:09:19 (3079986): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 10:09:19] Arguments: --nthreads 8
[2025-06-03 10:09:19] Threads: 8
[2025-06-03 10:09:19] Checking for CVMFS
[2025-06-03 10:09:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 10:09:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 10:09:19] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 10:09:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 10:09:19] 2.12.6.0 3646663 90480 332848 146744 3 63 20806207 32935936 2847 16776704 1 376090835 99.632 367863476 25215 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 10:09:19] CVMFS is ok
[2025-06-03 10:09:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 10:09:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 10:09:19] Further information can be found at the LHC@home message board.
[2025-06-03 10:09:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 10:09:19] Checking for apptainer binary...
[2025-06-03 10:09:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 10:09:19] Running /usr/bin/apptainer --version
[2025-06-03 10:09:19] apptainer version 1.4.1-1.el9
[2025-06-03 10:09:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 10:09:19] c-5-2.aglt2.org
[2025-06-03 10:09:19] apptainer works
[2025-06-03 10:09:19] Set ATHENA_PROC_NUMBER=8
[2025-06-03 10:09:19] Set ATHENA_CORE_NUMBER=8
[2025-06-03 10:09:20] Starting ATLAS job with PandaID=6677578631
[2025-06-03 10:09:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:24:47]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:24:47]  protocol_id=None
[2025-06-03 11:24:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 11:24:47]  replicas=None
[2025-06-03 11:24:47]  scope=mc23_13p6TeV
[2025-06-03 11:24:47]  status=None
[2025-06-03 11:24:47]  status_code=0
[2025-06-03 11:24:47]  storage_token=
[2025-06-03 11:24:47]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6677578631/log.45006595._029590.job.log.tgz.1
[2025-06-03 11:24:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/c1/log.45006595._029590.job.log.tgz.1
[2025-06-03 11:24:47]  workdir=None
[2025-06-03 11:24:47] ]
[2025-06-03 11:24:47] 2025-06-03 15:24:23,850 | INFO     | transferring file log.45006595._029590.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6677578631/log.45006595._029590.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 11:24:47] 2025-06-03 15:24:23,850 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6677578631/log.45006595._029590.job.log.tgz.1 /tmp/boinchome/slots/3/log.45006595._029590.job
[2025-06-03 11:24:47] 2025-06-03 15:24:23,861 | INFO     | adding to output.list: log.45006595._029590.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/c1/log.45006595._029590.job.log.tg
[2025-06-03 11:24:47] 2025-06-03 15:24:23,862 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 11:24:47] 2025-06-03 15:24:23,862 | INFO     | summary of transferred files:
[2025-06-03 11:24:47] 2025-06-03 15:24:23,862 | INFO     |  -- lfn=log.45006595._029590.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 11:24:47] 2025-06-03 15:24:23,862 | INFO     | stage-out finished correctly
[2025-06-03 11:24:47] 2025-06-03 15:24:24,925 | INFO     | PID=3083613 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 11:24:47] 2025-06-03 15:24:24,926 | INFO     | .. there are 5 such processes running
[2025-06-03 11:24:47] 2025-06-03 15:24:25,401 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 11:24:47] 2025-06-03 15:24:25,775 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-06-03 11:24:47] 2025-06-03 15:24:25,904 | INFO     | job 6677578631 has state=finished
[2025-06-03 11:24:47] 2025-06-03 15:24:25,904 | INFO     | preparing for final server update for job 6677578631 in state='finished'
[2025-06-03 11:24:47] 2025-06-03 15:24:25,905 | INFO     | this job has now completed (state=finished)
[2025-06-03 11:24:47] 2025-06-03 15:24:25,905 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 11:24:47] 2025-06-03 15:24:25,905 | INFO     | log transfer has been attempted: DONE
[2025-06-03 11:24:47] 2025-06-03 15:24:25,905 | INFO     | job 6677578631 has finished - writing final server update
[2025-06-03 11:24:47] 2025-06-03 15:24:25,906 | INFO     | total number of processed events: 400 (read)
[2025-06-03 11:24:47] 2025-06-03 15:24:25,920 | INFO     | executing command: lscpu
[2025-06-03 11:24:47] 2025-06-03 15:24:25,985 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 11:24:47] 2025-06-03 15:24:26,514 | WARNING  | process 3090524 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 11:24:47] 2025-06-03 15:24:26,515 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6677578631/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 11:24:47] 2025-06-03 15:24:26,766 | INFO     | number of running child processes to parent process 3090524: 1
[2025-06-03 11:24:47] 2025-06-03 15:24:26,766 | INFO     | maximum number of monitored processes: 6
[2025-06-03 11:24:47] 2025-06-03 15:24:29,269 | INFO     | monitor loop #337: job 0:6677578631 is in state 'finished'
[2025-06-03 11:24:47] 2025-06-03 15:24:29,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 11:24:47] 2025-06-03 15:24:29,370 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 11:24:47] 2025-06-03 15:24:29,370 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6677578631/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 11:24:47] 2025-06-03 15:24:29,371 | INFO     | extracted standard info from prmon json
[2025-06-03 11:24:47] 2025-06-03 15:24:29,371 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:24:47] 2025-06-03 15:24:29,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:24:47] 2025-06-03 15:24:29,372 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:24:47] 2025-06-03 15:24:29,372 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:24:47] 2025-06-03 15:24:29,374 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:24:47] 2025-06-03 15:24:29,374 | INFO     | sum of square deviations: 93240818.0
[2025-06-03 11:24:47] 2025-06-03 15:24:29,374 | INFO     | sum of deviations: 4716190417.0
[2025-06-03 11:24:47] 2025-06-03 15:24:29,374 | INFO     | mean x: 1748962112.0
[2025-06-03 11:24:47] 2025-06-03 15:24:29,375 | INFO     | mean y: 2159168.582089552
[2025-06-03 11:24:47] 2025-06-03 15:24:29,375 | INFO     | -- intersect: -88461654526.30077
[2025-06-03 11:24:47] 2025-06-03 15:24:29,375 | INFO     | intersect: -88461654526.30077
[2025-06-03 11:24:47] 2025-06-03 15:24:29,375 | INFO     | chi2: 0.5130486951924884
[2025-06-03 11:24:47] 2025-06-03 15:24:29,375 | INFO     | -- intersect: -88461654526.30077
[2025-06-03 11:24:47] 2025-06-03 15:24:29,375 | INFO     | current memory leak: 50.58 B/s (using 67 data points, chi2=0.51)
[2025-06-03 11:24:47] 2025-06-03 15:24:29,376 | INFO     | ..............................
[2025-06-03 11:24:47] 2025-06-03 15:24:29,376 | INFO     | . Timing measurements:
[2025-06-03 11:24:47] 2025-06-03 15:24:29,376 | INFO     | . get job = 0 s
[2025-06-03 11:24:47] 2025-06-03 15:24:29,376 | INFO     | . initial setup = 2 s
[2025-06-03 11:24:47] 2025-06-03 15:24:29,376 | INFO     | . payload setup = 6 s
[2025-06-03 11:24:47] 2025-06-03 15:24:29,376 | INFO     | . stage-in = 0 s
[2025-06-03 11:24:47] 2025-06-03 15:24:29,376 | INFO     | . payload execution = 4469 s
[2025-06-03 11:24:47] 2025-06-03 15:24:29,376 | INFO     | . stage-out = 0 s
[2025-06-03 11:24:47] 2025-06-03 15:24:29,376 | INFO     | . log creation = 0 s
[2025-06-03 11:24:47] 2025-06-03 15:24:29,376 | INFO     | ..............................
[2025-06-03 11:24:47] 2025-06-03 15:24:29,648 | INFO     | 
[2025-06-03 11:24:47] 2025-06-03 15:24:29,649 | INFO     | job summary report
[2025-06-03 11:24:47] 2025-06-03 15:24:29,649 | INFO     | --------------------------------------------------
[2025-06-03 11:24:47] 2025-06-03 15:24:29,649 | INFO     | PanDA job id: 6677578631
[2025-06-03 11:24:47] 2025-06-03 15:24:29,649 | INFO     | task id: 45006595
[2025-06-03 11:24:47] 2025-06-03 15:24:29,649 | INFO     | errors: (none)
[2025-06-03 11:24:47] 2025-06-03 15:24:29,649 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:24:47] 2025-06-03 15:24:29,649 | INFO     | pilot state: finished 
[2025-06-03 11:24:47] 2025-06-03 15:24:29,649 | INFO     | transexitcode: 0
[2025-06-03 11:24:47] 2025-06-03 15:24:29,650 | INFO     | exeerrorcode: 0
[2025-06-03 11:24:47] 2025-06-03 15:24:29,650 | INFO     | exeerrordiag: 
[2025-06-03 11:24:47] 2025-06-03 15:24:29,650 | INFO     | exitcode: 0
[2025-06-03 11:24:47] 2025-06-03 15:24:29,650 | INFO     | exitmsg: OK
[2025-06-03 11:24:47] 2025-06-03 15:24:29,650 | INFO     | cpuconsumptiontime: 30400 s
[2025-06-03 11:24:47] 2025-06-03 15:24:29,650 | INFO     | nevents: 400
[2025-06-03 11:24:47] 2025-06-03 15:24:29,650 | INFO     | neventsw: 0
[2025-06-03 11:24:47] 2025-06-03 15:24:29,650 | INFO     | pid: 3090524
[2025-06-03 11:24:47] 2025-06-03 15:24:29,650 | INFO     | pgrp: 3090524
[2025-06-03 11:24:47] 2025-06-03 15:24:29,651 | INFO     | corecount: 8
[2025-06-03 11:24:47] 2025-06-03 15:24:29,651 | INFO     | event service: False
[2025-06-03 11:24:47] 2025-06-03 15:24:29,651 | INFO     | sizes: {0: 2404356, 1: 2405212, 4: 2405418, 12: 2405446, 4479: 2431502, 4480: 2440443, 4481: 2440627, 4485: 2440797}
[2025-06-03 11:24:47] 2025-06-03 15:24:29,651 | INFO     | --------------------------------------------------
[2025-06-03 11:24:47] 2025-06-03 15:24:29,651 | INFO     | 
[2025-06-03 11:24:47] 2025-06-03 15:24:29,651 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-03 11:24:47] 2025-06-03 15:24:29,669 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,669 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,669 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,670 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,670 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,670 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,670 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,671 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,671 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,671 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,671 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,671 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,671 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:24:47] 2025-06-03 15:24:29,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,671 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:24:47] 2025-06-03 15:24:29,672 | INFO     | job 6677578631 has completed (purged errors)
[2025-06-03 11:24:47] 2025-06-03 15:24:29,672 | INFO     | overall cleanup function is called
[2025-06-03 11:24:47] 2025-06-03 15:24:30,680 | INFO     | --- collectZombieJob: --- 10, [3090524]
[2025-06-03 11:24:47] 2025-06-03 15:24:30,680 | INFO     | zombie collector waiting for pid 3090524
[2025-06-03 11:24:47] 2025-06-03 15:24:30,680 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:24:47] 2025-06-03 15:24:30,680 | INFO     | collected zombie processes
[2025-06-03 11:24:47] 2025-06-03 15:24:30,680 | INFO     | will attempt to kill all subprocesses of pid=3090524
[2025-06-03 11:24:47] 2025-06-03 15:24:30,940 | INFO     | process IDs to be killed: [3090524] (in reverse order)
[2025-06-03 11:24:47] 2025-06-03 15:24:31,008 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:24:47] 2025-06-03 15:24:31,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:24:47] 2025-06-03 15:24:31,016 | INFO     | did not find any defunct processes belonging to 3090524
[2025-06-03 11:24:47] 2025-06-03 15:24:31,023 | INFO     | did not find any defunct processes belonging to 3090524
[2025-06-03 11:24:47] 2025-06-03 15:24:31,023 | INFO     | ready for new job
[2025-06-03 11:24:47] 2025-06-03 15:24:31,023 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:24:47] 2025-06-03 15:24:31,025 | INFO     | **************************************
[2025-06-03 11:24:47] 2025-06-03 15:24:31,025 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:24:47] 2025-06-03 15:24:31,025 | INFO     | **************************************
[2025-06-03 11:24:47] 2025-06-03 15:24:31,025 | INFO     | 
[2025-06-03 11:24:47] 2025-06-03 15:24:31,038 | INFO     | architecture information:
[2025-06-03 11:24:47] 2025-06-03 15:24:31,039 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:24:47] 2025-06-03 15:24:31,052 | INFO     | cat /etc/os-release:
[2025-06-03 11:24:47] NAME="CentOS Linux"
[2025-06-03 11:24:47] VERSION="7 (Core)"
[2025-06-03 11:24:47] ID="centos"
[2025-06-03 11:24:47] ID_LIKE="rhel fedora"
[2025-06-03 11:24:47] VERSION_ID="7"
[2025-06-03 11:24:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:24:47] ANSI_COLOR="0;31"
[2025-06-03 11:24:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:24:47] HOME_URL="https://www.centos.org/"
[2025-06-03 11:24:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:24:47] 
[2025-06-03 11:24:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:24:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:24:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:24:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:24:47] 
[2025-06-03 11:24:47] 2025-06-03 15:24:31,052 | INFO     | **************************************
[2025-06-03 11:24:47] 2025-06-03 15:24:31,555 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-03 11:24:47] 2025-06-03 15:24:31,571 | INFO     | sufficient remaining disk space (74510761984 B)
[2025-06-03 11:24:47] 2025-06-03 15:24:31,571 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:24:47] 2025-06-03 15:24:31,571 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:24:47] 2025-06-03 15:24:31,571 | INFO     | update_server=False
[2025-06-03 11:24:47] 2025-06-03 15:24:31,571 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:24:47] 2025-06-03 15:24:31,572 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 11:24:47] 2025-06-03 15:24:31,572 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:24:47] 2025-06-03 15:24:31,572 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:24:47] 2025-06-03 15:24:31,573 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:24:47] 2025-06-03 15:24:31,573 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:24:47] 2025-06-03 15:24:31,592 | INFO     | all job control threads have been joined
[2025-06-03 11:24:47] 2025-06-03 15:24:31,772 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 11:24:47] 2025-06-03 15:24:31,772 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 11:24:47] 2025-06-03 15:24:31,772 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:24:47] 2025-06-03 15:24:31,773 | INFO     | will abort loop
[2025-06-03 11:24:47] 2025-06-03 15:24:31,938 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:24:47] 2025-06-03 15:24:32,290 | INFO     | all data control threads have been joined
[2025-06-03 11:24:47] 2025-06-03 15:24:32,294 | INFO     | all payload control threads have been joined
[2025-06-03 11:24:47] 2025-06-03 15:24:32,577 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:32,597 | INFO     | [job] control thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:32,661 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:32,771 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:32,778 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:33,036 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:33,050 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:33,295 | INFO     | [data] control thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:33,300 | INFO     | [payload] control thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:33,733 | INFO     | [job] validate thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:33,741 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:33,856 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:33,942 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:34,493 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:24:47] 2025-06-03 15:24:35,499 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:35,574 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:41,705 | INFO     | job.realtimelogging is not enabled
[2025-06-03 11:24:47] 2025-06-03 15:24:42,710 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:24:47] 2025-06-03 15:24:42,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140191294134080)>', '<ExcThread(monitor, started 140190794368768)>']
[2025-06-03 11:24:47] 2025-06-03 15:24:43,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:24:47] 2025-06-03 15:24:43,629 | INFO     | [monitor] control thread has ended
[2025-06-03 11:24:47] 2025-06-03 15:24:47,767 | INFO     | all workflow threads have been joined
[2025-06-03 11:24:47] 2025-06-03 15:24:47,767 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:24:47] 2025-06-03 15:24:47,767 | INFO     | traces error code: 0
[2025-06-03 11:24:47] 2025-06-03 15:24:47,767 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:24:47] 2025-06-03 15:24:47,869 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:24:47] 2025-06-03 15:24:47,870 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:24:47] 2025-06-03 15:24:47,872 [wrapper] pilotpid: 3083613
[2025-06-03 11:24:47] 2025-06-03 15:24:47,873 [wrapper] Pilot exit status: 0
[2025-06-03 11:24:47] 2025-06-03 15:24:47,880 [wrapper] pandaids: 6677578631
[2025-06-03 11:24:47] 2025-06-03 15:24:47,927 [wrapper] cleanup supervisor_pilot 3247312 3083614
[2025-06-03 11:24:47] 2025-06-03 15:24:47,929 [wrapper] Test setup, not cleaning
[2025-06-03 11:24:47] 2025-06-03 15:24:47,932 [wrapper] apfmon messages muted
[2025-06-03 11:24:47] 2025-06-03 15:24:47,934 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:24:47] 2025-06-03 15:24:47,936 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:24:47]  *** Error codes and diagnostics ***
[2025-06-03 11:24:47]     "exeErrorCode": 0,
[2025-06-03 11:24:47]     "exeErrorDiag": "",
[2025-06-03 11:24:47]     "pilotErrorCode": 0,
[2025-06-03 11:24:47]     "pilotErrorDiag": "",
[2025-06-03 11:24:47]  *** Listing of results directory ***
[2025-06-03 11:24:47] total 391200
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 06:43 pilot3.tar.gz
[2025-06-03 11:24:47] -rwx------. 1 boincer umatlas     37140 Jun  3 06:54 runpilot2-wrapper.sh
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 06:54 queuedata.json
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas       100 Jun  3 10:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:24:47] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 10:09 run_atlas
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas       105 Jun  3 10:09 job.xml
[2025-06-03 11:24:47] -rw-r--r--. 2 boincer umatlas 216060166 Jun  3 10:09 EVNT.45006593._001183.pool.root.1
[2025-06-03 11:24:47] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 10:09 start_atlas.sh
[2025-06-03 11:24:47] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 10:09 shared
[2025-06-03 11:24:47] -rw-r--r--. 2 boincer umatlas    508879 Jun  3 10:09 input.tar.gz
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas         0 Jun  3 10:09 boinc_lockfile
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 10:09 pandaJob.out
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas    982724 Jun  3 10:09 agis_schedconf.cvmfs.json
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas   1603667 Jun  3 10:09 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:24:47] drwx------. 4 boincer umatlas      4096 Jun  3 10:09 pilot3
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas      6673 Jun  3 11:21 init_data.xml
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas        95 Jun  3 11:23 pilot_heartbeat.json
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas 179180039 Jun  3 11:23 HITS.45006595._029590.pool.root.1
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas       529 Jun  3 11:23 boinc_task_state.xml
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas      1033 Jun  3 11:24 memory_monitor_summary.json
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas    307990 Jun  3 11:24 log.45006595._029590.job.log.tgz.1
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas      7705 Jun  3 11:24 heartbeat.json
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas        27 Jun  3 11:24 wrapper_checkpoint.txt
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 11:24 boinc_mmap_file
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas      4734 Jun  3 11:24 pilotlog.txt
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas    447865 Jun  3 11:24 log.45006595._029590.job.log.1
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas       357 Jun  3 11:24 output.list
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas       620 Jun  3 11:24 runtime_log
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas    778240 Jun  3 11:24 result.tar.gz
[2025-06-03 11:24:47] -rw-------. 1 boincer umatlas       648 Jun  3 11:24 Z5yMDmaSeg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5ajKDmKA8Dkm.diag
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas      8644 Jun  3 11:24 runtime_log.err
[2025-06-03 11:24:47] -rw-r--r--. 1 boincer umatlas     21778 Jun  3 11:24 stderr.txt
[2025-06-03 11:24:48] HITS file was successfully produced:
[2025-06-03 11:24:48] -rw-------. 1 boincer umatlas 179180039 Jun  3 11:23 shared/HITS.pool.root.1
[2025-06-03 11:24:48]  *** Contents of shared directory: ***
[2025-06-03 11:24:48] total 387264
[2025-06-03 11:24:48] -rw-r--r--. 2 boincer umatlas 216060166 Jun  3 10:09 ATLAS.root_0
[2025-06-03 11:24:48] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 10:09 start_atlas.sh
[2025-06-03 11:24:48] -rw-r--r--. 2 boincer umatlas    508879 Jun  3 10:09 input.tar.gz
[2025-06-03 11:24:48] -rw-------. 1 boincer umatlas 179180039 Jun  3 11:23 HITS.pool.root.1
[2025-06-03 11:24:48] -rw-------. 1 boincer umatlas    778240 Jun  3 11:24 result.tar.gz
11:24:49 (3079986): run_atlas exited; CPU time 30520.686351
11:24:49 (3079986): called boinc_finish(0)

</stderr_txt>
]]>

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