Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:12:39 (3045): wrapper (7.7.26015): starting
22:12:39 (3045): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 22:12:39] Arguments: --nthreads 8
[2025-06-03 22:12:39] Threads: 8
[2025-06-03 22:12:39] Checking for CVMFS
[2025-06-03 22:12:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 22:12:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 22:12:40] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 22:12:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 22:12:41] 2.11.2.0 30898 32221 90052 146754 1 114 13029913 25165824 3990 130560 0 16167790 99.801 18896342 2311 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 22:12:41] CVMFS is ok
[2025-06-03 22:12:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:12:41] Checking for apptainer binary...
[2025-06-03 22:12:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 22:12:41] Running /usr/bin/apptainer --version
[2025-06-03 22:12:41] apptainer version 1.3.2-1.el7
[2025-06-03 22:12:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 22:12:54] cg-vwn285.simple-grid.lan
[2025-06-03 22:12:54] apptainer works
[2025-06-03 22:12:55] Set ATHENA_PROC_NUMBER=8
[2025-06-03 22:12:55] Set ATHENA_CORE_NUMBER=8
[2025-06-03 22:12:55] Starting ATLAS job with PandaID=6677580026
[2025-06-03 22:12:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 02:00:11]  *** The last 200 lines of the pilot log: ***
[2025-06-04 02:00:11] 2025-06-03 23:52:01,106 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6677580026/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 02:00:11] 2025-06-03 23:52:01,107 | INFO     | extracted standard info from prmon json
[2025-06-04 02:00:11] 2025-06-03 23:52:01,107 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 02:00:11] 2025-06-03 23:52:01,108 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 02:00:11] 2025-06-03 23:52:01,108 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 02:00:11] 2025-06-03 23:52:01,108 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 02:00:11] 2025-06-03 23:52:01,113 | INFO     | fitting pss+swap vs Time
[2025-06-04 02:00:11] 2025-06-03 23:52:01,113 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,115 | INFO     | sum of deviations: 29405245627.000008
[2025-06-04 02:00:11] 2025-06-03 23:52:01,115 | INFO     | mean x: 1748988136.0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,115 | INFO     | mean y: 2454553.131455399
[2025-06-04 02:00:11] 2025-06-03 23:52:01,116 | INFO     | -- intersect: -17160972688.256306
[2025-06-04 02:00:11] 2025-06-03 23:52:01,116 | INFO     | intersect: -17160972688.256306
[2025-06-04 02:00:11] 2025-06-03 23:52:01,116 | INFO     | chi2: 2.3834775396867585
[2025-06-04 02:00:11] 2025-06-03 23:52:01,117 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,118 | INFO     | sum of deviations: 42564753301.00001
[2025-06-04 02:00:11] 2025-06-03 23:52:01,118 | INFO     | mean x: 1748987983.5
[2025-06-04 02:00:11] 2025-06-03 23:52:01,119 | INFO     | mean y: 2464092.653846154
[2025-06-04 02:00:11] 2025-06-03 23:52:01,119 | INFO     | -- intersect: -26677089325.912556
[2025-06-04 02:00:11] 2025-06-03 23:52:01,119 | INFO     | intersect: -26677089325.912556
[2025-06-04 02:00:11] 2025-06-03 23:52:01,144 | INFO     | chi2: 1.6125237853410503
[2025-06-04 02:00:11] 2025-06-03 23:52:01,145 | INFO     | current chi2=1.6125237853410503 (change=32.34575285517599 %)
[2025-06-04 02:00:11] 2025-06-03 23:52:01,145 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,147 | INFO     | sum of deviations: 41468541089.00001
[2025-06-04 02:00:11] 2025-06-03 23:52:01,147 | INFO     | mean x: 1748987831.0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,147 | INFO     | mean y: 2463241.3891625614
[2025-06-04 02:00:11] 2025-06-03 23:52:01,147 | INFO     | -- intersect: -27958333707.792133
[2025-06-04 02:00:11] 2025-06-03 23:52:01,147 | INFO     | intersect: -27958333707.792133
[2025-06-04 02:00:11] 2025-06-03 23:52:01,148 | INFO     | chi2: 1.612920425345463
[2025-06-04 02:00:11] 2025-06-03 23:52:01,148 | INFO     | current chi2=1.612920425345463 (change=-0.024597466903643273 %)
[2025-06-04 02:00:11] 2025-06-03 23:52:01,148 | INFO     | right removable region: 202
[2025-06-04 02:00:11] 2025-06-03 23:52:01,148 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,150 | INFO     | sum of deviations: -6892801780.499999
[2025-06-04 02:00:11] 2025-06-03 23:52:01,150 | INFO     | mean x: 1748988288.5
[2025-06-04 02:00:11] 2025-06-03 23:52:01,150 | INFO     | mean y: 2481167.860576923
[2025-06-04 02:00:11] 2025-06-03 23:52:01,150 | INFO     | -- intersect: 4322884579.461279
[2025-06-04 02:00:11] 2025-06-03 23:52:01,151 | INFO     | intersect: 4322884579.461279
[2025-06-04 02:00:11] 2025-06-03 23:52:01,151 | INFO     | chi2: 0.8074206356802729
[2025-06-04 02:00:11] 2025-06-03 23:52:01,151 | INFO     | current chi2=0.8074206356802729 (change=66.1242607813126 %)
[2025-06-04 02:00:11] 2025-06-03 23:52:01,152 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,153 | INFO     | sum of deviations: -6022426909.999999
[2025-06-04 02:00:11] 2025-06-03 23:52:01,153 | INFO     | mean x: 1748988441.0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,153 | INFO     | mean y: 2480502.18226601
[2025-06-04 02:00:11] 2025-06-03 23:52:01,154 | INFO     | -- intersect: 4063195209.7710915
[2025-06-04 02:00:11] 2025-06-03 23:52:01,154 | INFO     | intersect: 4063195209.7710915
[2025-06-04 02:00:11] 2025-06-03 23:52:01,154 | INFO     | chi2: 0.7946487943302408
[2025-06-04 02:00:11] 2025-06-03 23:52:01,154 | INFO     | current chi2=0.7946487943302408 (change=1.5818076459330839 %)
[2025-06-04 02:00:11] 2025-06-03 23:52:01,154 | INFO     | left removable region: 20
[2025-06-04 02:00:11] 2025-06-03 23:52:01,155 | INFO     | sum of square deviations: 1869302025.5
[2025-06-04 02:00:11] 2025-06-03 23:52:01,156 | INFO     | sum of deviations: 4504125350.500002
[2025-06-04 02:00:11] 2025-06-03 23:52:01,156 | INFO     | mean x: 1748988410.5
[2025-06-04 02:00:11] 2025-06-03 23:52:01,156 | INFO     | mean y: 2493325.7747252746
[2025-06-04 02:00:11] 2025-06-03 23:52:01,156 | INFO     | -- intersect: -4211733658.4156113
[2025-06-04 02:00:11] 2025-06-03 23:52:01,157 | INFO     | intersect: -4211733658.4156113
[2025-06-04 02:00:11] 2025-06-03 23:52:01,157 | INFO     | chi2: 0.0015357914221138327
[2025-06-04 02:00:11] 2025-06-03 23:52:01,157 | INFO     | -- intersect: -4211733658.4156113
[2025-06-04 02:00:11] 2025-06-03 23:52:01,157 | INFO     | current memory leak: 2.41 B/s (using 182 data points, chi2=0.00)
[2025-06-04 02:00:11] 2025-06-03 23:52:01,158 | INFO     | ..............................
[2025-06-04 02:00:11] 2025-06-03 23:52:01,158 | INFO     | . Timing measurements:
[2025-06-04 02:00:11] 2025-06-03 23:52:01,158 | INFO     | . get job = 0 s
[2025-06-04 02:00:11] 2025-06-03 23:52:01,158 | INFO     | . initial setup = 2 s
[2025-06-04 02:00:11] 2025-06-03 23:52:01,159 | INFO     | . payload setup = 17 s
[2025-06-04 02:00:11] 2025-06-03 23:52:01,159 | INFO     | . stage-in = 0 s
[2025-06-04 02:00:11] 2025-06-03 23:52:01,159 | INFO     | . payload execution = 12983 s
[2025-06-04 02:00:11] 2025-06-03 23:52:01,159 | INFO     | . stage-out = 3 s
[2025-06-04 02:00:11] 2025-06-03 23:52:01,159 | INFO     | . log creation = 1 s
[2025-06-04 02:00:11] 2025-06-03 23:52:01,159 | INFO     | ..............................
[2025-06-04 02:00:11] 2025-06-03 23:52:01,644 | INFO     | 
[2025-06-04 02:00:11] 2025-06-03 23:52:01,645 | INFO     | job summary report
[2025-06-04 02:00:11] 2025-06-03 23:52:01,645 | INFO     | --------------------------------------------------
[2025-06-04 02:00:11] 2025-06-03 23:52:01,645 | INFO     | PanDA job id: 6677580026
[2025-06-04 02:00:11] 2025-06-03 23:52:01,645 | INFO     | task id: 45006595
[2025-06-04 02:00:11] 2025-06-03 23:52:01,645 | INFO     | errors: (none)
[2025-06-04 02:00:11] 2025-06-03 23:52:01,645 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 02:00:11] 2025-06-03 23:52:01,645 | INFO     | pilot state: finished 
[2025-06-04 02:00:11] 2025-06-03 23:52:01,645 | INFO     | transexitcode: 0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,645 | INFO     | exeerrorcode: 0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,645 | INFO     | exeerrordiag: 
[2025-06-04 02:00:11] 2025-06-03 23:52:01,646 | INFO     | exitcode: 0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,646 | INFO     | exitmsg: OK
[2025-06-04 02:00:11] 2025-06-03 23:52:01,646 | INFO     | cpuconsumptiontime: 49692 s
[2025-06-04 02:00:11] 2025-06-03 23:52:01,646 | INFO     | nevents: 400
[2025-06-04 02:00:11] 2025-06-03 23:52:01,646 | INFO     | neventsw: 0
[2025-06-04 02:00:11] 2025-06-03 23:52:01,646 | INFO     | pid: 15309
[2025-06-04 02:00:11] 2025-06-03 23:52:01,646 | INFO     | pgrp: 15309
[2025-06-04 02:00:11] 2025-06-03 23:52:01,646 | INFO     | corecount: 8
[2025-06-04 02:00:11] 2025-06-03 23:52:01,646 | INFO     | event service: False
[2025-06-04 02:00:11] 2025-06-03 23:52:01,647 | INFO     | sizes: {0: 2405014, 1: 2405213, 10: 2405419, 12: 2405447, 13005: 2434723, 13010: 2443666, 13011: 2443850, 13099: 2444020}
[2025-06-04 02:00:11] 2025-06-03 23:52:01,647 | INFO     | --------------------------------------------------
[2025-06-04 02:00:11] 2025-06-03 23:52:01,647 | INFO     | 
[2025-06-04 02:00:11] 2025-06-03 23:52:01,647 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-06-04 02:00:11] 2025-06-03 23:52:02,087 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,087 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,087 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,087 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,087 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,088 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,088 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,088 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,088 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,088 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,088 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,088 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,088 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,089 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,089 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,089 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,089 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 02:00:11] 2025-06-03 23:52:02,089 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,089 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 02:00:11] 2025-06-03 23:52:02,089 | INFO     | job 6677580026 has completed (purged errors)
[2025-06-04 02:00:11] 2025-06-03 23:52:02,089 | INFO     | overall cleanup function is called
[2025-06-04 02:00:11] 2025-06-03 23:52:03,098 | INFO     | --- collectZombieJob: --- 10, [15309]
[2025-06-04 02:00:11] 2025-06-03 23:52:03,099 | INFO     | zombie collector waiting for pid 15309
[2025-06-04 02:00:11] 2025-06-03 23:52:03,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 02:00:11] 2025-06-03 23:52:03,099 | INFO     | collected zombie processes
[2025-06-04 02:00:11] 2025-06-03 23:52:03,099 | INFO     | will attempt to kill all subprocesses of pid=15309
[2025-06-04 02:00:11] 2025-06-03 23:52:03,237 | INFO     | process IDs to be killed: [15309] (in reverse order)
[2025-06-04 02:00:11] 2025-06-03 23:52:04,119 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 02:00:11] 2025-06-03 23:52:04,119 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 02:00:11] 2025-06-03 23:52:04,123 | INFO     | did not find any defunct processes belonging to 15309
[2025-06-04 02:00:11] 2025-06-03 23:52:04,125 | INFO     | did not find any defunct processes belonging to 15309
[2025-06-04 02:00:11] 2025-06-03 23:52:04,126 | INFO     | ready for new job
[2025-06-04 02:00:11] 2025-06-03 23:52:04,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 02:00:11] 2025-06-03 23:52:04,128 | INFO     | **************************************
[2025-06-04 02:00:11] 2025-06-03 23:52:04,128 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 02:00:11] 2025-06-03 23:52:04,128 | INFO     | **************************************
[2025-06-04 02:00:11] 2025-06-03 23:52:04,128 | INFO     | 
[2025-06-04 02:00:11] 2025-06-03 23:52:04,129 | INFO     | pilot is running in a VM
[2025-06-04 02:00:11] 2025-06-03 23:52:04,129 | INFO     | architecture information:
[2025-06-04 02:00:11] 2025-06-03 23:52:04,130 | INFO     | executing command: cat /etc/os-release
[2025-06-04 02:00:11] 2025-06-03 23:52:04,391 | INFO     | cat /etc/os-release:
[2025-06-04 02:00:11] NAME="CentOS Linux"
[2025-06-04 02:00:11] VERSION="7 (Core)"
[2025-06-04 02:00:11] ID="centos"
[2025-06-04 02:00:11] ID_LIKE="rhel fedora"
[2025-06-04 02:00:11] VERSION_ID="7"
[2025-06-04 02:00:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 02:00:11] ANSI_COLOR="0;31"
[2025-06-04 02:00:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 02:00:11] HOME_URL="https://www.centos.org/"
[2025-06-04 02:00:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 02:00:11] 
[2025-06-04 02:00:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 02:00:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 02:00:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 02:00:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 02:00:11] 
[2025-06-04 02:00:11] 2025-06-03 23:52:04,391 | INFO     | **************************************
[2025-06-04 02:00:11] 2025-06-03 23:52:04,895 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-06-04 02:00:11] 2025-06-03 23:52:05,021 | INFO     | sufficient remaining disk space (496956866560 B)
[2025-06-04 02:00:11] 2025-06-03 23:52:05,021 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 02:00:11] 2025-06-03 23:52:05,021 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 02:00:11] 2025-06-03 23:52:05,022 | INFO     | update_server=False
[2025-06-04 02:00:11] 2025-06-03 23:52:05,022 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 02:00:11] 2025-06-03 23:52:05,022 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 02:00:11] 2025-06-03 23:52:05,023 | INFO     | aborting loop
[2025-06-04 02:00:11] 2025-06-03 23:52:05,028 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 02:00:11] 2025-06-03 23:52:05,223 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 02:00:11] 2025-06-03 23:52:05,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 02:00:11] 2025-06-03 23:52:05,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 02:00:11] 2025-06-03 23:52:05,386 | INFO     | all data control threads have been joined
[2025-06-04 02:00:11] 2025-06-03 23:52:05,670 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 02:00:11] 2025-06-03 23:52:06,027 | INFO     | [job] retrieve thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:06,028 | INFO     | [job] job monitor thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:06,053 | INFO     | [payload] failed_post thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:06,227 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:06,305 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 02:00:11] 2025-06-03 23:52:06,342 | INFO     | all payload control threads have been joined
[2025-06-04 02:00:11] 2025-06-03 23:52:06,392 | INFO     | [data] control thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:06,402 | INFO     | all job control threads have been joined
[2025-06-04 02:00:11] 2025-06-03 23:52:06,428 | INFO     | [job] validate thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:06,453 | INFO     | [payload] validate_post thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:06,673 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:06,811 | INFO     | [data] copytool_in thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:07,018 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:07,310 | INFO     | [job] queue monitor thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:07,348 | INFO     | [payload] control thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:07,408 | INFO     | [job] control thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:07,450 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:07,677 | INFO     | [data] copytool_out thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:09,037 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 02:00:11] 2025-06-03 23:52:09,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140385574123328)>', '<ExcThread(monitor, started 140385133246208)>']
[2025-06-04 02:00:11] 2025-06-03 23:52:10,254 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 02:00:11] 2025-06-03 23:52:10,255 | INFO     | [monitor] control thread has ended
[2025-06-04 02:00:11] 2025-06-03 23:52:14,861 | INFO     | all workflow threads have been joined
[2025-06-04 02:00:11] 2025-06-03 23:52:14,862 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 02:00:11] 2025-06-03 23:52:14,862 | INFO     | traces error code: 0
[2025-06-04 02:00:11] 2025-06-03 23:52:14,862 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 02:00:11] 2025-06-03 23:52:15,154 [wrapper] ==== pilot stdout END ====
[2025-06-04 02:00:11] 2025-06-03 23:52:15,242 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 02:00:11] 2025-06-03 23:52:15,298 [wrapper] pilotpid: 6752
[2025-06-04 02:00:11] 2025-06-03 23:52:15,366 [wrapper] Pilot exit status: 0
[2025-06-04 02:00:11] 2025-06-03 23:52:15,646 [wrapper] pandaids: 6677580026
[2025-06-04 02:00:11] 2025-06-03 23:52:16,574 [wrapper] cleanup supervisor_pilot  3881 6753
[2025-06-04 02:00:11] 2025-06-03 23:52:16,588 [wrapper] Test setup, not cleaning
[2025-06-04 02:00:11] 2025-06-03 23:52:16,598 [wrapper] apfmon messages muted
[2025-06-04 02:00:11] 2025-06-03 23:52:16,611 [wrapper] ==== wrapper stdout END ====
[2025-06-04 02:00:11] 2025-06-03 23:52:16,668 [wrapper] ==== wrapper stderr END ====
[2025-06-04 02:00:11]  *** Error codes and diagnostics ***
[2025-06-04 02:00:11]     "exeErrorCode": 0,
[2025-06-04 02:00:11]     "exeErrorDiag": "",
[2025-06-04 02:00:11]     "pilotErrorCode": 0,
[2025-06-04 02:00:11]     "pilotErrorDiag": "",
[2025-06-04 02:00:11]  *** Listing of results directory ***
[2025-06-04 02:00:11] total 387972
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc    495897 Jun  3 12:57 pilot3.tar.gz
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc      5111 Jun  3 13:12 queuedata.json
[2025-06-04 02:00:11] -rwx------. 1 boinc boinc     37140 Jun  3 13:12 runpilot2-wrapper.sh
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc       100 Jun  3 22:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 02:00:11] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 22:12 run_atlas
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc       105 Jun  3 22:12 job.xml
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc      6392 Jun  3 22:12 init_data.xml
[2025-06-04 02:00:11] -rw-r--r--. 2 boinc boinc 214656385 Jun  3 22:12 EVNT.45006593._001201.pool.root.1
[2025-06-04 02:00:11] -rw-r--r--. 2 boinc boinc     15093 Jun  3 22:12 start_atlas.sh
[2025-06-04 02:00:11] drwxrwx--x. 2 boinc boinc        68 Jun  3 22:12 shared
[2025-06-04 02:00:11] -rw-r--r--. 2 boinc boinc    508878 Jun  3 22:12 input.tar.gz
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc         0 Jun  3 22:12 boinc_lockfile
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc      2525 Jun  3 22:12 pandaJob.out
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc    986893 Jun  3 22:13 agis_schedconf.cvmfs.json
[2025-06-04 02:00:11] drwx------. 4 boinc boinc      4096 Jun  3 22:13 pilot3
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc 175791260 Jun  4 01:49 HITS.45006595._030005.pool.root.1
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc       531 Jun  4 01:49 boinc_task_state.xml
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc      1018 Jun  4 01:50 memory_monitor_summary.json
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc   1603667 Jun  4 01:50 agis_ddmendpoints.agis.ALL.json
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc    367515 Jun  4 01:50 log.45006595._030005.job.log.tgz.1
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc        95 Jun  4 01:51 pilot_heartbeat.json
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc      7688 Jun  4 01:52 heartbeat.json
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc      4417 Jun  4 01:52 pilotlog.txt
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc   1138882 Jun  4 01:52 log.45006595._030005.job.log.1
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc       357 Jun  4 01:52 output.list
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc       620 Jun  4 01:52 runtime_log
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc   1525760 Jun  4 01:52 result.tar.gz
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc      8673 Jun  4 01:52 runtime_log.err
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc       657 Jun  4 01:52 PFiMDmVkeg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnfjKDmX6dglm.diag
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc      8192 Jun  4 02:00 boinc_mmap_file
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc        28 Jun  4 02:00 wrapper_checkpoint.txt
[2025-06-04 02:00:11] -rw-r--r--. 1 boinc boinc     20506 Jun  4 02:00 stderr.txt
[2025-06-04 02:00:11] HITS file was successfully produced:
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc 175791260 Jun  4 01:49 shared/HITS.pool.root.1
[2025-06-04 02:00:11]  *** Contents of shared directory: ***
[2025-06-04 02:00:11] total 383308
[2025-06-04 02:00:11] -rw-r--r--. 2 boinc boinc 214656385 Jun  3 22:12 ATLAS.root_0
[2025-06-04 02:00:11] -rw-r--r--. 2 boinc boinc     15093 Jun  3 22:12 start_atlas.sh
[2025-06-04 02:00:11] -rw-r--r--. 2 boinc boinc    508878 Jun  3 22:12 input.tar.gz
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc 175791260 Jun  4 01:49 HITS.pool.root.1
[2025-06-04 02:00:11] -rw-------. 1 boinc boinc   1525760 Jun  4 01:52 result.tar.gz
02:00:13 (3045): run_atlas exited; CPU time 49858.534903
02:00:13 (3045): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN