Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:57:53 (13056): wrapper (7.7.26015): starting
01:57:53 (13056): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 01:57:53] Arguments: --nthreads 8
[2025-06-04 01:57:53] Threads: 8
[2025-06-04 01:57:53] Checking for CVMFS
[2025-06-04 01:57:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 01:57:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 01:57:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 01:57:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 01:57:56] 2.11.2.0 2201 32445 91060 146761 0 209 22390512 25165825 3241 130560 0 16392075 99.787 19093977 2219 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 01:57:56] CVMFS is ok
[2025-06-04 01:57:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 01:57:56] Checking for apptainer binary...
[2025-06-04 01:57:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 01:57:56] Running /usr/bin/apptainer --version
[2025-06-04 01:57:56] apptainer version 1.3.2-1.el7
[2025-06-04 01:57:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:58:09] cg-vwn381.simple-grid.lan
[2025-06-04 01:58:09] apptainer works
[2025-06-04 01:58:09] Set ATHENA_PROC_NUMBER=8
[2025-06-04 01:58:09] Set ATHENA_CORE_NUMBER=8
[2025-06-04 01:58:09] Starting ATLAS job with PandaID=6677580147
[2025-06-04 01:58:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:57:22]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:57:22] 2025-06-04 03:45:16,292 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-6677580147/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:57:22] 2025-06-04 03:45:16,292 | INFO     | extracted standard info from prmon json
[2025-06-04 05:57:22] 2025-06-04 03:45:16,293 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 05:57:22] 2025-06-04 03:45:16,293 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 05:57:22] 2025-06-04 03:45:16,293 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 05:57:22] 2025-06-04 03:45:16,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 05:57:22] 2025-06-04 03:45:16,298 | INFO     | fitting pss+swap vs Time
[2025-06-04 05:57:22] 2025-06-04 03:45:16,299 | INFO     | sum of square deviations: 3346927870.0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,301 | INFO     | sum of deviations: 1030625134.0000019
[2025-06-04 05:57:22] 2025-06-04 03:45:16,301 | INFO     | mean x: 1749001873.0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,301 | INFO     | mean y: 2479476.705882353
[2025-06-04 05:57:22] 2025-06-04 03:45:16,301 | INFO     | -- intersect: -536093614.7204588
[2025-06-04 05:57:22] 2025-06-04 03:45:16,301 | INFO     | intersect: -536093614.7204588
[2025-06-04 05:57:22] 2025-06-04 03:45:16,302 | INFO     | chi2: 2.620572550898864
[2025-06-04 05:57:22] 2025-06-04 03:45:16,302 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,304 | INFO     | sum of deviations: 15472042806.000002
[2025-06-04 05:57:22] 2025-06-04 03:45:16,304 | INFO     | mean x: 1749001720.5
[2025-06-04 05:57:22] 2025-06-04 03:45:16,304 | INFO     | mean y: 2489210.0555555555
[2025-06-04 05:57:22] 2025-06-04 03:45:16,304 | INFO     | -- intersect: -8657304091.93308
[2025-06-04 05:57:22] 2025-06-04 03:45:16,304 | INFO     | intersect: -8657304091.93308
[2025-06-04 05:57:22] 2025-06-04 03:45:16,305 | INFO     | chi2: 1.8535497676473558
[2025-06-04 05:57:22] 2025-06-04 03:45:16,305 | INFO     | current chi2=1.8535497676473558 (change=29.26928250806936 %)
[2025-06-04 05:57:22] 2025-06-04 03:45:16,305 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,307 | INFO     | sum of deviations: 15063447604.0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,307 | INFO     | mean x: 1749001568.0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,307 | INFO     | mean y: 2488916.1374407583
[2025-06-04 05:57:22] 2025-06-04 03:45:16,308 | INFO     | -- intersect: -9042302273.079504
[2025-06-04 05:57:22] 2025-06-04 03:45:16,308 | INFO     | intersect: -9042302273.079504
[2025-06-04 05:57:22] 2025-06-04 03:45:16,308 | INFO     | chi2: 1.854562896487342
[2025-06-04 05:57:22] 2025-06-04 03:45:16,308 | INFO     | current chi2=1.854562896487342 (change=-0.05465884205915302 %)
[2025-06-04 05:57:22] 2025-06-04 03:45:16,308 | INFO     | right removable region: 210
[2025-06-04 05:57:22] 2025-06-04 03:45:16,309 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,314 | INFO     | sum of deviations: -38295788776.0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,314 | INFO     | mean x: 1749002025.5
[2025-06-04 05:57:22] 2025-06-04 03:45:16,314 | INFO     | mean y: 2506260.814814815
[2025-06-04 05:57:22] 2025-06-04 03:45:16,315 | INFO     | -- intersect: 21436888076.263355
[2025-06-04 05:57:22] 2025-06-04 03:45:16,315 | INFO     | intersect: 21436888076.263355
[2025-06-04 05:57:22] 2025-06-04 03:45:16,315 | INFO     | chi2: 0.9498515041831761
[2025-06-04 05:57:22] 2025-06-04 03:45:16,315 | INFO     | current chi2=0.9498515041831761 (change=63.7540466545231 %)
[2025-06-04 05:57:22] 2025-06-04 03:45:16,316 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,317 | INFO     | sum of deviations: -36543314347.0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,318 | INFO     | mean x: 1749002178.0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,318 | INFO     | mean y: 2504963.085308057
[2025-06-04 05:57:22] 2025-06-04 03:45:16,318 | INFO     | -- intersect: 21944810044.73721
[2025-06-04 05:57:22] 2025-06-04 03:45:16,318 | INFO     | intersect: 21944810044.73721
[2025-06-04 05:57:22] 2025-06-04 03:45:16,318 | INFO     | chi2: 0.9382038900101156
[2025-06-04 05:57:22] 2025-06-04 03:45:16,319 | INFO     | current chi2=0.9382038900101156 (change=1.226256327622162 %)
[2025-06-04 05:57:22] 2025-06-04 03:45:16,319 | INFO     | left removable region: 20
[2025-06-04 05:57:22] 2025-06-04 03:45:16,319 | INFO     | sum of square deviations: 2126802667.5
[2025-06-04 05:57:22] 2025-06-04 03:45:16,320 | INFO     | sum of deviations: -7875099237.500002
[2025-06-04 05:57:22] 2025-06-04 03:45:16,321 | INFO     | mean x: 1749002147.5
[2025-06-04 05:57:22] 2025-06-04 03:45:16,321 | INFO     | mean y: 2504530.0789473685
[2025-06-04 05:57:22] 2025-06-04 03:45:16,321 | INFO     | -- intersect: 6478688563.811411
[2025-06-04 05:57:22] 2025-06-04 03:45:16,321 | INFO     | intersect: 6478688563.811411
[2025-06-04 05:57:22] 2025-06-04 03:45:16,321 | INFO     | chi2: 0.09056771940051736
[2025-06-04 05:57:22] 2025-06-04 03:45:16,322 | INFO     | -- intersect: 6478688563.811411
[2025-06-04 05:57:22] 2025-06-04 03:45:16,322 | INFO     | current memory leak: -3.70 B/s (using 190 data points, chi2=0.09)
[2025-06-04 05:57:22] 2025-06-04 03:45:16,323 | INFO     | ..............................
[2025-06-04 05:57:22] 2025-06-04 03:45:16,323 | INFO     | . Timing measurements:
[2025-06-04 05:57:22] 2025-06-04 03:45:16,323 | INFO     | . get job = 0 s
[2025-06-04 05:57:22] 2025-06-04 03:45:16,323 | INFO     | . initial setup = 2 s
[2025-06-04 05:57:22] 2025-06-04 03:45:16,323 | INFO     | . payload setup = 12 s
[2025-06-04 05:57:22] 2025-06-04 03:45:16,324 | INFO     | . stage-in = 0 s
[2025-06-04 05:57:22] 2025-06-04 03:45:16,324 | INFO     | . payload execution = 13477 s
[2025-06-04 05:57:22] 2025-06-04 03:45:16,324 | INFO     | . stage-out = 3 s
[2025-06-04 05:57:22] 2025-06-04 03:45:16,324 | INFO     | . log creation = 1 s
[2025-06-04 05:57:22] 2025-06-04 03:45:16,324 | INFO     | ..............................
[2025-06-04 05:57:22] 2025-06-04 03:45:16,528 | INFO     | 
[2025-06-04 05:57:22] 2025-06-04 03:45:16,529 | INFO     | job summary report
[2025-06-04 05:57:22] 2025-06-04 03:45:16,529 | INFO     | --------------------------------------------------
[2025-06-04 05:57:22] 2025-06-04 03:45:16,529 | INFO     | PanDA job id: 6677580147
[2025-06-04 05:57:22] 2025-06-04 03:45:16,529 | INFO     | task id: 45006595
[2025-06-04 05:57:22] 2025-06-04 03:45:16,529 | INFO     | errors: (none)
[2025-06-04 05:57:22] 2025-06-04 03:45:16,529 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:57:22] 2025-06-04 03:45:16,529 | INFO     | pilot state: finished 
[2025-06-04 05:57:22] 2025-06-04 03:45:16,529 | INFO     | transexitcode: 0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,529 | INFO     | exeerrorcode: 0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,529 | INFO     | exeerrordiag: 
[2025-06-04 05:57:22] 2025-06-04 03:45:16,529 | INFO     | exitcode: 0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,530 | INFO     | exitmsg: OK
[2025-06-04 05:57:22] 2025-06-04 03:45:16,530 | INFO     | cpuconsumptiontime: 50593 s
[2025-06-04 05:57:22] 2025-06-04 03:45:16,530 | INFO     | nevents: 400
[2025-06-04 05:57:22] 2025-06-04 03:45:16,530 | INFO     | neventsw: 0
[2025-06-04 05:57:22] 2025-06-04 03:45:16,530 | INFO     | pid: 25269
[2025-06-04 05:57:22] 2025-06-04 03:45:16,530 | INFO     | pgrp: 25269
[2025-06-04 05:57:22] 2025-06-04 03:45:16,530 | INFO     | corecount: 8
[2025-06-04 05:57:22] 2025-06-04 03:45:16,530 | INFO     | event service: False
[2025-06-04 05:57:22] 2025-06-04 03:45:16,530 | INFO     | sizes: {0: 2404350, 1: 2405207, 2: 2405207, 11: 2405441, 12: 2405469, 13495: 2435500, 13498: 2444443, 13502: 2444499, 13586: 2444499}
[2025-06-04 05:57:22] 2025-06-04 03:45:16,530 | INFO     | --------------------------------------------------
[2025-06-04 05:57:22] 2025-06-04 03:45:16,530 | INFO     | 
[2025-06-04 05:57:22] 2025-06-04 03:45:16,531 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-06-04 05:57:22] 2025-06-04 03:45:17,080 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,081 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,081 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,081 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,082 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,082 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,082 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,082 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,082 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,082 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,082 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,082 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:57:22] 2025-06-04 03:45:17,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,082 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:57:22] 2025-06-04 03:45:17,083 | INFO     | job 6677580147 has completed (purged errors)
[2025-06-04 05:57:22] 2025-06-04 03:45:17,083 | INFO     | overall cleanup function is called
[2025-06-04 05:57:22] 2025-06-04 03:45:18,091 | INFO     | --- collectZombieJob: --- 10, [25269]
[2025-06-04 05:57:22] 2025-06-04 03:45:18,091 | INFO     | zombie collector waiting for pid 25269
[2025-06-04 05:57:22] 2025-06-04 03:45:18,091 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:57:22] 2025-06-04 03:45:18,091 | INFO     | collected zombie processes
[2025-06-04 05:57:22] 2025-06-04 03:45:18,091 | INFO     | will attempt to kill all subprocesses of pid=25269
[2025-06-04 05:57:22] 2025-06-04 03:45:18,219 | INFO     | process IDs to be killed: [25269] (in reverse order)
[2025-06-04 05:57:22] 2025-06-04 03:45:19,072 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:57:22] 2025-06-04 03:45:19,073 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:57:22] 2025-06-04 03:45:19,077 | INFO     | did not find any defunct processes belonging to 25269
[2025-06-04 05:57:22] 2025-06-04 03:45:19,080 | INFO     | did not find any defunct processes belonging to 25269
[2025-06-04 05:57:22] 2025-06-04 03:45:19,080 | INFO     | ready for new job
[2025-06-04 05:57:22] 2025-06-04 03:45:19,080 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:57:22] 2025-06-04 03:45:19,082 | INFO     | **************************************
[2025-06-04 05:57:22] 2025-06-04 03:45:19,082 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:57:22] 2025-06-04 03:45:19,082 | INFO     | **************************************
[2025-06-04 05:57:22] 2025-06-04 03:45:19,083 | INFO     | 
[2025-06-04 05:57:22] 2025-06-04 03:45:19,083 | INFO     | pilot is running in a VM
[2025-06-04 05:57:22] 2025-06-04 03:45:19,083 | INFO     | architecture information:
[2025-06-04 05:57:22] 2025-06-04 03:45:19,086 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:57:22] 2025-06-04 03:45:19,329 | INFO     | cat /etc/os-release:
[2025-06-04 05:57:22] NAME="CentOS Linux"
[2025-06-04 05:57:22] VERSION="7 (Core)"
[2025-06-04 05:57:22] ID="centos"
[2025-06-04 05:57:22] ID_LIKE="rhel fedora"
[2025-06-04 05:57:22] VERSION_ID="7"
[2025-06-04 05:57:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:57:22] ANSI_COLOR="0;31"
[2025-06-04 05:57:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:57:22] HOME_URL="https://www.centos.org/"
[2025-06-04 05:57:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:57:22] 
[2025-06-04 05:57:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:57:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:57:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:57:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:57:22] 
[2025-06-04 05:57:22] 2025-06-04 03:45:19,329 | INFO     | **************************************
[2025-06-04 05:57:22] 2025-06-04 03:45:19,832 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-06-04 05:57:22] 2025-06-04 03:45:20,123 | INFO     | sufficient remaining disk space (496668508160 B)
[2025-06-04 05:57:22] 2025-06-04 03:45:20,123 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:57:22] 2025-06-04 03:45:20,123 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:57:22] 2025-06-04 03:45:20,123 | INFO     | update_server=False
[2025-06-04 05:57:22] 2025-06-04 03:45:20,123 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:57:22] 2025-06-04 03:45:20,124 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:57:22] 2025-06-04 03:45:20,130 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:57:22] 2025-06-04 03:45:20,308 | INFO     | all data control threads have been joined
[2025-06-04 05:57:22] 2025-06-04 03:45:20,510 | INFO     | all job control threads have been joined
[2025-06-04 05:57:22] 2025-06-04 03:45:20,848 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:57:22] 2025-06-04 03:45:20,848 | INFO     | aborting loop
[2025-06-04 05:57:22] 2025-06-04 03:45:21,069 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:57:22] 2025-06-04 03:45:21,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:57:22] 2025-06-04 03:45:21,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:57:22] 2025-06-04 03:45:21,129 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:21,290 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:21,314 | INFO     | [data] control thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:21,323 | INFO     | all payload control threads have been joined
[2025-06-04 05:57:22] 2025-06-04 03:45:21,369 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:21,516 | INFO     | [job] control thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:21,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:57:22] 2025-06-04 03:45:21,720 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:21,734 | INFO     | [job] validate thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:21,752 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:21,854 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:21,929 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:22,070 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:22,137 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:22,329 | INFO     | [payload] control thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:22,548 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:22,606 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:24,133 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:57:22] 2025-06-04 03:45:25,767 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139959728101184)>', '<ExcThread(monitor, started 139959117784832)>']
[2025-06-04 05:57:22] 2025-06-04 03:45:26,099 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:57:22] 2025-06-04 03:45:26,099 | INFO     | [monitor] control thread has ended
[2025-06-04 05:57:22] 2025-06-04 03:45:30,793 | INFO     | all workflow threads have been joined
[2025-06-04 05:57:22] 2025-06-04 03:45:30,793 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:57:22] 2025-06-04 03:45:30,794 | INFO     | traces error code: 0
[2025-06-04 05:57:22] 2025-06-04 03:45:30,794 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:57:22] 2025-06-04 03:45:31,102 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:57:22] 2025-06-04 03:45:31,127 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:57:22] 2025-06-04 03:45:31,154 [wrapper] pilotpid: 16942
[2025-06-04 05:57:22] 2025-06-04 03:45:31,178 [wrapper] Pilot exit status: 0
[2025-06-04 05:57:22] 2025-06-04 03:45:31,597 [wrapper] pandaids: 6677580147
[2025-06-04 05:57:22] 2025-06-04 03:45:31,654 [wrapper] cleanup supervisor_pilot 22064 16943
[2025-06-04 05:57:22] 2025-06-04 03:45:31,754 [wrapper] Test setup, not cleaning
[2025-06-04 05:57:22] 2025-06-04 03:45:31,840 [wrapper] apfmon messages muted
[2025-06-04 05:57:22] 2025-06-04 03:45:31,913 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:57:22] 2025-06-04 03:45:31,965 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:57:22]  *** Error codes and diagnostics ***
[2025-06-04 05:57:22]     "exeErrorCode": 0,
[2025-06-04 05:57:22]     "exeErrorDiag": "",
[2025-06-04 05:57:22]     "pilotErrorCode": 0,
[2025-06-04 05:57:22]     "pilotErrorDiag": "",
[2025-06-04 05:57:22]  *** Listing of results directory ***
[2025-06-04 05:57:22] total 398464
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc    495897 Jun  3 12:57 pilot3.tar.gz
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc      5111 Jun  3 13:09 queuedata.json
[2025-06-04 05:57:22] -rwx------. 1 boinc boinc     37140 Jun  3 13:09 runpilot2-wrapper.sh
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc       100 Jun  4 01:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:57:22] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 01:57 run_atlas
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc       105 Jun  4 01:57 job.xml
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc      6392 Jun  4 01:57 init_data.xml
[2025-06-04 05:57:22] -rw-r--r--. 2 boinc boinc 217236457 Jun  4 01:57 EVNT.45006593._001206.pool.root.1
[2025-06-04 05:57:22] -rw-r--r--. 2 boinc boinc     15093 Jun  4 01:57 start_atlas.sh
[2025-06-04 05:57:22] drwxrwx--x. 2 boinc boinc        68 Jun  4 01:57 shared
[2025-06-04 05:57:22] -rw-r--r--. 2 boinc boinc    508877 Jun  4 01:57 input.tar.gz
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc         0 Jun  4 01:57 boinc_lockfile
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc      2522 Jun  4 01:58 pandaJob.out
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc    986077 Jun  4 01:58 agis_schedconf.cvmfs.json
[2025-06-04 05:57:22] drwx------. 4 boinc boinc      4096 Jun  4 01:58 pilot3
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc 183869527 Jun  4 05:42 HITS.45006595._030126.pool.root.1
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc       531 Jun  4 05:42 boinc_task_state.xml
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc      1019 Jun  4 05:43 memory_monitor_summary.json
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc   1603667 Jun  4 05:43 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc    367541 Jun  4 05:43 log.45006595._030126.job.log.tgz.1
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc        95 Jun  4 05:44 pilot_heartbeat.json
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc      7687 Jun  4 05:45 heartbeat.json
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc      4417 Jun  4 05:45 pilotlog.txt
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc   1181667 Jun  4 05:45 log.45006595._030126.job.log.1
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc       357 Jun  4 05:45 output.list
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc       620 Jun  4 05:45 runtime_log
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc   1566720 Jun  4 05:45 result.tar.gz
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc      8673 Jun  4 05:45 runtime_log.err
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc       656 Jun  4 05:45 iINLDm4geg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxejKDmqv7bRn.diag
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc      8192 Jun  4 05:57 boinc_mmap_file
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc        28 Jun  4 05:57 wrapper_checkpoint.txt
[2025-06-04 05:57:22] -rw-r--r--. 1 boinc boinc     20495 Jun  4 05:57 stderr.txt
[2025-06-04 05:57:22] HITS file was successfully produced:
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc 183869527 Jun  4 05:42 shared/HITS.pool.root.1
[2025-06-04 05:57:22]  *** Contents of shared directory: ***
[2025-06-04 05:57:22] total 393760
[2025-06-04 05:57:22] -rw-r--r--. 2 boinc boinc 217236457 Jun  4 01:57 ATLAS.root_0
[2025-06-04 05:57:22] -rw-r--r--. 2 boinc boinc     15093 Jun  4 01:57 start_atlas.sh
[2025-06-04 05:57:22] -rw-r--r--. 2 boinc boinc    508877 Jun  4 01:57 input.tar.gz
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc 183869527 Jun  4 05:42 HITS.pool.root.1
[2025-06-04 05:57:22] -rw-------. 1 boinc boinc   1566720 Jun  4 05:45 result.tar.gz
05:57:24 (13056): run_atlas exited; CPU time 50776.885105
05:57:24 (13056): called boinc_finish(0)

</stderr_txt>
]]>

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