Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
14:34:22 (1362366): wrapper (7.7.26015): starting
14:34:22 (1362366): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 14:34:22] Arguments: --nthreads 12
[2025-06-05 14:34:22] Threads: 12
[2025-06-05 14:34:22] Checking for CVMFS
[2025-06-05 14:34:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 14:34:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 14:34:23] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 14:34:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 14:34:25] 2.12.7.0 359462 3186 62576 146822 1 56 2255068 4096000 912 130560 0 2695064 99.992 717459 130 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 14:34:25] CVMFS is ok
[2025-06-05 14:34:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 14:34:25] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 14:34:25] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 14:34:25] Further information can be found at the LHC@home message board.
[2025-06-05 14:34:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 14:34:25] Checking for apptainer binary...
[2025-06-05 14:34:25] apptainer is not installed, using version from CVMFS
[2025-06-05 14:34:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 14:34:27] ggg3250
[2025-06-05 14:34:27] apptainer works
[2025-06-05 14:34:27] Set ATHENA_PROC_NUMBER=12
[2025-06-05 14:34:27] Set ATHENA_CORE_NUMBER=12
[2025-06-05 14:34:27] Starting ATLAS job with PandaID=6677516854
[2025-06-05 14:34:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 18:17:07]  *** The last 200 lines of the pilot log: ***
[2025-06-05 18:17:07] 2025-06-05 18:16:45,123 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 18:17:07] 2025-06-05 18:16:45,126 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 18:17:07] 2025-06-05 18:16:45,127 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 18:17:07] 2025-06-05 18:16:45,128 | INFO     | fitting pss+swap vs Time
[2025-06-05 18:17:07] 2025-06-05 18:16:45,129 | INFO     | sum of square deviations: 3081664124.9953523
[2025-06-05 18:17:07] 2025-06-05 18:16:45,129 | INFO     | sum of deviations: -9206263199.283731
[2025-06-05 18:17:07] 2025-06-05 18:16:45,129 | INFO     | mean x: 1749140832.004651
[2025-06-05 18:17:07] 2025-06-05 18:16:45,129 | INFO     | mean y: 2646032.28372093
[2025-06-05 18:17:07] 2025-06-05 18:16:45,129 | INFO     | -- intersect: 5228085995.528656
[2025-06-05 18:17:07] 2025-06-05 18:16:45,129 | INFO     | intersect: 5228085995.528656
[2025-06-05 18:17:07] 2025-06-05 18:16:45,130 | INFO     | chi2: 4.866302359981011
[2025-06-05 18:17:07] 2025-06-05 18:16:45,130 | INFO     | sum of square deviations: 2871623282.495233
[2025-06-05 18:17:07] 2025-06-05 18:16:45,147 | INFO     | sum of deviations: 20995329256.057133
[2025-06-05 18:17:07] 2025-06-05 18:16:45,147 | INFO     | mean x: 1749140679.504762
[2025-06-05 18:17:07] 2025-06-05 18:16:45,147 | INFO     | mean y: 2667654.442857143
[2025-06-05 18:17:07] 2025-06-05 18:16:45,147 | INFO     | -- intersect: -12785842838.986374
[2025-06-05 18:17:07] 2025-06-05 18:16:45,147 | INFO     | intersect: -12785842838.986374
[2025-06-05 18:17:07] 2025-06-05 18:16:45,147 | INFO     | chi2: 3.371394309628742
[2025-06-05 18:17:07] 2025-06-05 18:16:45,147 | INFO     | current chi2=3.371394309628742 (change=30.71958829862151 %)
[2025-06-05 18:17:07] 2025-06-05 18:16:45,147 | INFO     | sum of square deviations: 2671350064.9951305
[2025-06-05 18:17:07] 2025-06-05 18:16:45,148 | INFO     | sum of deviations: 20520616484.22438
[2025-06-05 18:17:07] 2025-06-05 18:16:45,148 | INFO     | mean x: 1749140527.004878
[2025-06-05 18:17:07] 2025-06-05 18:16:45,148 | INFO     | mean y: 2667293.775609756
[2025-06-05 18:17:07] 2025-06-05 18:16:45,148 | INFO     | -- intersect: -13433775350.721695
[2025-06-05 18:17:07] 2025-06-05 18:16:45,148 | INFO     | intersect: -13433775350.721695
[2025-06-05 18:17:07] 2025-06-05 18:16:45,149 | INFO     | chi2: 3.374181867382092
[2025-06-05 18:17:07] 2025-06-05 18:16:45,149 | INFO     | current chi2=3.374181867382092 (change=-0.082682638022747 %)
[2025-06-05 18:17:07] 2025-06-05 18:16:45,149 | INFO     | right removable region: 204
[2025-06-05 18:17:07] 2025-06-05 18:16:45,149 | INFO     | sum of square deviations: 2871622672.495233
[2025-06-05 18:17:07] 2025-06-05 18:16:45,149 | INFO     | sum of deviations: -68504630603.16188
[2025-06-05 18:17:07] 2025-06-05 18:16:45,150 | INFO     | mean x: 1749140984.504762
[2025-06-05 18:17:07] 2025-06-05 18:16:45,150 | INFO     | mean y: 2688895.161904762
[2025-06-05 18:17:07] 2025-06-05 18:16:45,150 | INFO     | -- intersect: 41729709009.622475
[2025-06-05 18:17:07] 2025-06-05 18:16:45,150 | INFO     | intersect: 41729709009.622475
[2025-06-05 18:17:07] 2025-06-05 18:16:45,150 | INFO     | chi2: 2.0677274059641997
[2025-06-05 18:17:07] 2025-06-05 18:16:45,150 | INFO     | current chi2=2.0677274059641997 (change=57.50926981092338 %)
[2025-06-05 18:17:07] 2025-06-05 18:16:45,150 | INFO     | sum of square deviations: 2671348844.9951305
[2025-06-05 18:17:07] 2025-06-05 18:16:45,175 | INFO     | sum of deviations: -79634030471.56097
[2025-06-05 18:17:07] 2025-06-05 18:16:45,175 | INFO     | mean x: 1749141137.004878
[2025-06-05 18:17:07] 2025-06-05 18:16:45,175 | INFO     | mean y: 2697323.56097561
[2025-06-05 18:17:07] 2025-06-05 18:16:45,175 | INFO     | -- intersect: 52145328887.48956
[2025-06-05 18:17:07] 2025-06-05 18:16:45,175 | INFO     | intersect: 52145328887.48956
[2025-06-05 18:17:07] 2025-06-05 18:16:45,175 | INFO     | chi2: 1.9101269923622581
[2025-06-05 18:17:07] 2025-06-05 18:16:45,176 | INFO     | current chi2=1.9101269923622581 (change=7.621914433563889 %)
[2025-06-05 18:17:07] 2025-06-05 18:16:45,176 | INFO     | left removable region: 20
[2025-06-05 18:17:07] 2025-06-05 18:16:45,176 | INFO     | sum of square deviations: 1931614105.99457
[2025-06-05 18:17:07] 2025-06-05 18:16:45,176 | INFO     | sum of deviations: -35553168132.81523
[2025-06-05 18:17:07] 2025-06-05 18:16:45,176 | INFO     | mean x: 1749141106.5054348
[2025-06-05 18:17:07] 2025-06-05 18:16:45,176 | INFO     | mean y: 2711077.815217391
[2025-06-05 18:17:07] 2025-06-05 18:16:45,176 | INFO     | -- intersect: 32197292622.137928
[2025-06-05 18:17:07] 2025-06-05 18:16:45,176 | INFO     | intersect: 32197292622.137928
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | chi2: 0.26470509342549997
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | -- intersect: 32197292622.137928
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | current memory leak: -18.41 B/s (using 184 data points, chi2=0.26)
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | ..............................
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | . Timing measurements:
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | . get job = 0 s
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | . initial setup = 6 s
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | . payload setup = 59 s
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | . stage-in = 0 s
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | . payload execution = 13096 s
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | . stage-out = 2 s
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | . log creation = 0 s
[2025-06-05 18:17:07] 2025-06-05 18:16:45,177 | INFO     | ..............................
[2025-06-05 18:17:07] 2025-06-05 18:16:45,402 | INFO     | 
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | job summary report
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | --------------------------------------------------
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | PanDA job id: 6677516854
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | task id: 45006595
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | errors: (none)
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | pilot state: finished 
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | transexitcode: 0
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | exeerrorcode: 0
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | exeerrordiag: 
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | exitcode: 0
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | exitmsg: OK
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | cpuconsumptiontime: 22440 s
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | nevents: 400
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | neventsw: 0
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | pid: 1372372
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | pgrp: 1372372
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | corecount: 12
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | event service: False
[2025-06-05 18:17:07] 2025-06-05 18:16:45,403 | INFO     | sizes: {0: 2397192, 1: 2397391, 12: 2397391, 23: 2397419, 33: 2397447, 35: 2397709, 44: 2397865, 13160: 2427493, 13164: 2436536, 13187: 2436650}
[2025-06-05 18:17:07] 2025-06-05 18:16:45,404 | INFO     | --------------------------------------------------
[2025-06-05 18:17:07] 2025-06-05 18:16:45,404 | INFO     | 
[2025-06-05 18:17:07] 2025-06-05 18:16:45,404 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,451 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,452 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,452 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,452 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 18:17:07] 2025-06-05 18:16:45,452 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,452 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 18:17:07] 2025-06-05 18:16:45,452 | INFO     | job 6677516854 has completed (purged errors)
[2025-06-05 18:17:07] 2025-06-05 18:16:45,452 | INFO     | overall cleanup function is called
[2025-06-05 18:17:07] 2025-06-05 18:16:46,454 | INFO     | --- collectZombieJob: --- 10, [1372372]
[2025-06-05 18:17:07] 2025-06-05 18:16:46,455 | INFO     | zombie collector waiting for pid 1372372
[2025-06-05 18:17:07] 2025-06-05 18:16:46,455 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 18:17:07] 2025-06-05 18:16:46,455 | INFO     | collected zombie processes
[2025-06-05 18:17:07] 2025-06-05 18:16:46,455 | INFO     | will attempt to kill all subprocesses of pid=1372372
[2025-06-05 18:17:07] 2025-06-05 18:16:46,599 | INFO     | process IDs to be killed: [1372372] (in reverse order)
[2025-06-05 18:17:07] 2025-06-05 18:16:46,699 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 18:17:07] 2025-06-05 18:16:46,699 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 18:17:07] 2025-06-05 18:16:46,700 | INFO     | did not find any defunct processes belonging to 1372372
[2025-06-05 18:17:07] 2025-06-05 18:16:46,701 | INFO     | did not find any defunct processes belonging to 1372372
[2025-06-05 18:17:07] 2025-06-05 18:16:46,701 | INFO     | ready for new job
[2025-06-05 18:17:07] 2025-06-05 18:16:46,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 18:17:07] 2025-06-05 18:16:46,702 | INFO     | **************************************
[2025-06-05 18:17:07] 2025-06-05 18:16:46,702 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 18:17:07] 2025-06-05 18:16:46,702 | INFO     | **************************************
[2025-06-05 18:17:07] 2025-06-05 18:16:46,702 | INFO     | 
[2025-06-05 18:17:07] 2025-06-05 18:16:46,723 | INFO     | architecture information:
[2025-06-05 18:17:07] 2025-06-05 18:16:46,726 | INFO     | executing command: cat /etc/os-release
[2025-06-05 18:17:07] 2025-06-05 18:16:46,847 | INFO     | cat /etc/os-release:
[2025-06-05 18:17:07] NAME="CentOS Linux"
[2025-06-05 18:17:07] VERSION="7 (Core)"
[2025-06-05 18:17:07] ID="centos"
[2025-06-05 18:17:07] ID_LIKE="rhel fedora"
[2025-06-05 18:17:07] VERSION_ID="7"
[2025-06-05 18:17:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 18:17:07] ANSI_COLOR="0;31"
[2025-06-05 18:17:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 18:17:07] HOME_URL="https://www.centos.org/"
[2025-06-05 18:17:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 18:17:07] 
[2025-06-05 18:17:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 18:17:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 18:17:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 18:17:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 18:17:07] 
[2025-06-05 18:17:07] 2025-06-05 18:16:46,847 | INFO     | **************************************
[2025-06-05 18:17:07] 2025-06-05 18:16:47,351 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-05 18:17:07] 2025-06-05 18:16:47,395 | INFO     | sufficient remaining disk space (187330199552 B)
[2025-06-05 18:17:07] 2025-06-05 18:16:47,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 18:17:07] 2025-06-05 18:16:47,395 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 18:17:07] 2025-06-05 18:16:47,395 | INFO     | update_server=False
[2025-06-05 18:17:07] 2025-06-05 18:16:47,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 18:17:07] 2025-06-05 18:16:47,395 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 18:17:07] 2025-06-05 18:16:47,395 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 18:17:07] 2025-06-05 18:16:47,395 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 18:17:07] 2025-06-05 18:16:47,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 18:17:07] 2025-06-05 18:16:47,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 18:17:07] 2025-06-05 18:16:47,396 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 18:17:07] 2025-06-05 18:16:47,502 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 18:17:07] 2025-06-05 18:16:47,504 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 18:17:07] 2025-06-05 18:16:47,504 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 18:17:07] 2025-06-05 18:16:47,504 | INFO     | will abort loop
[2025-06-05 18:17:07] 2025-06-05 18:16:47,658 | INFO     | all data control threads have been joined
[2025-06-05 18:17:07] 2025-06-05 18:16:47,970 | INFO     | all job control threads have been joined
[2025-06-05 18:17:07] 2025-06-05 18:16:48,390 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 18:17:07] 2025-06-05 18:16:48,399 | INFO     | [job] retrieve thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:48,399 | INFO     | [job] queue monitor thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:48,507 | INFO     | [job] job monitor thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:48,603 | INFO     | [job] validate thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:48,662 | INFO     | [data] control thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:48,874 | INFO     | [data] copytool_in thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:48,926 | INFO     | all payload control threads have been joined
[2025-06-05 18:17:07] 2025-06-05 18:16:48,974 | INFO     | [job] control thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:49,162 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:49,478 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:49,802 | INFO     | [payload] failed_post thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:49,854 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:49,930 | INFO     | [payload] control thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:49,998 | INFO     | [payload] validate_post thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:50,398 | INFO     | [data] copytool_out thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:51,410 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:16:58,066 | INFO     | job.realtimelogging is not enabled
[2025-06-05 18:17:07] 2025-06-05 18:16:59,070 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 18:17:07] 2025-06-05 18:17:01,010 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852038588224)>', '<ExcThread(monitor, started 139851743602432)>']
[2025-06-05 18:17:07] 2025-06-05 18:17:01,462 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 18:17:07] 2025-06-05 18:17:01,463 | INFO     | [monitor] control thread has ended
[2025-06-05 18:17:07] 2025-06-05 18:17:06,034 | INFO     | all workflow threads have been joined
[2025-06-05 18:17:07] 2025-06-05 18:17:06,035 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 18:17:07] 2025-06-05 18:17:06,035 | INFO     | traces error code: 0
[2025-06-05 18:17:07] 2025-06-05 18:17:06,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 18:17:07] 2025-06-05 18:17:06,331 [wrapper] ==== pilot stdout END ====
[2025-06-05 18:17:07] 2025-06-05 18:17:06,363 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 18:17:07] 2025-06-05 18:17:06,379 [wrapper] pilotpid: 1365951
[2025-06-05 18:17:07] 2025-06-05 18:17:06,411 [wrapper] Pilot exit status: 0
[2025-06-05 18:17:07] 2025-06-05 18:17:06,479 [wrapper] pandaids: 6677516854
[2025-06-05 18:17:07] 2025-06-05 18:17:06,551 [wrapper] cleanup supervisor_pilot 1424668 1365952
[2025-06-05 18:17:07] 2025-06-05 18:17:06,586 [wrapper] Test setup, not cleaning
[2025-06-05 18:17:07] 2025-06-05 18:17:06,619 [wrapper] apfmon messages muted
[2025-06-05 18:17:07] 2025-06-05 18:17:06,651 [wrapper] ==== wrapper stdout END ====
[2025-06-05 18:17:07] 2025-06-05 18:17:06,683 [wrapper] ==== wrapper stderr END ====
[2025-06-05 18:17:07]  *** Error codes and diagnostics ***
[2025-06-05 18:17:07]     "exeErrorCode": 0,
[2025-06-05 18:17:07]     "exeErrorDiag": "",
[2025-06-05 18:17:07]     "pilotErrorCode": 0,
[2025-06-05 18:17:07]     "pilotErrorDiag": "",
[2025-06-05 18:17:07]  *** Listing of results directory ***
[2025-06-05 18:17:07] total 392928
[2025-06-05 18:17:07] -rw-r--r-- 1 boinc boinc    495897 Jun  3 07:38 pilot3.tar.gz
[2025-06-05 18:17:07] -rwx------ 1 boinc boinc     37140 Jun  3 07:43 runpilot2-wrapper.sh
[2025-06-05 18:17:07] -rw-r--r-- 1 boinc boinc      5111 Jun  3 07:43 queuedata.json
[2025-06-05 18:17:07] -rw-rw-r-- 1 boinc boinc       100 Jun  5 14:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 18:17:07] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 14:34 run_atlas
[2025-06-05 18:17:07] -rw-rw-r-- 1 boinc boinc       105 Jun  5 14:34 job.xml
[2025-06-05 18:17:07] -rw-rw-r-- 1 boinc boinc      9361 Jun  5 14:34 init_data.xml
[2025-06-05 18:17:07] -rw-r--r-- 2 boinc boinc 212719141 Jun  5 14:34 EVNT.45006593._000975.pool.root.1
[2025-06-05 18:17:07] -rw-r--r-- 2 boinc boinc     15093 Jun  5 14:34 start_atlas.sh
[2025-06-05 18:17:07] drwxrwx--x 2 boinc boinc      4096 Jun  5 14:34 shared
[2025-06-05 18:17:07] -rw-r--r-- 2 boinc boinc    508875 Jun  5 14:34 input.tar.gz
[2025-06-05 18:17:07] -rw-rw-r-- 1 boinc boinc         0 Jun  5 14:34 boinc_lockfile
[2025-06-05 18:17:07] -rw-rw-r-- 1 boinc boinc      2524 Jun  5 14:34 pandaJob.out
[2025-06-05 18:17:07] -rw------- 1 boinc boinc    983210 Jun  5 14:35 agis_schedconf.cvmfs.json
[2025-06-05 18:17:07] drwx------ 4 boinc boinc      4096 Jun  5 14:35 pilot3
[2025-06-05 18:17:07] -rw------- 1 boinc boinc 182460228 Jun  5 18:14 HITS.45006595._024369.pool.root.1
[2025-06-05 18:17:07] -rw-rw-r-- 1 boinc boinc       530 Jun  5 18:15 boinc_task_state.xml
[2025-06-05 18:17:07] -rw------- 1 boinc boinc      1020 Jun  5 18:16 memory_monitor_summary.json
[2025-06-05 18:17:07] -rw------- 1 boinc boinc        95 Jun  5 18:16 pilot_heartbeat.json
[2025-06-05 18:17:07] -rw------- 1 boinc boinc   1598969 Jun  5 18:16 agis_ddmendpoints.agis.ALL.json
[2025-06-05 18:17:07] -rw------- 1 boinc boinc    431298 Jun  5 18:16 log.45006595._024369.job.log.tgz.1
[2025-06-05 18:17:07] -rw------- 1 boinc boinc      7668 Jun  5 18:16 heartbeat.json
[2025-06-05 18:17:07] -rw-rw-r-- 1 boinc boinc      8192 Jun  5 18:16 boinc_mmap_file
[2025-06-05 18:17:07] -rw-rw-r-- 1 boinc boinc        28 Jun  5 18:16 wrapper_checkpoint.txt
[2025-06-05 18:17:07] -rw------- 1 boinc boinc      4758 Jun  5 18:17 pilotlog.txt
[2025-06-05 18:17:07] -rw------- 1 boinc boinc   1239198 Jun  5 18:17 log.45006595._024369.job.log.1
[2025-06-05 18:17:07] -rw------- 1 boinc boinc       357 Jun  5 18:17 output.list
[2025-06-05 18:17:07] -rw-rw-r-- 1 boinc boinc       620 Jun  5 18:17 runtime_log
[2025-06-05 18:17:07] -rw------- 1 boinc boinc   1689600 Jun  5 18:17 result.tar.gz
[2025-06-05 18:17:07] -rw-rw-r-- 1 boinc boinc      8959 Jun  5 18:17 runtime_log.err
[2025-06-05 18:17:07] -rw------- 1 boinc boinc       652 Jun  5 18:17 OPDNDmhTbg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWkiKDmuMI8Vm.diag
[2025-06-05 18:17:07] -rw-rw-r-- 1 boinc boinc     21057 Jun  5 18:17 stderr.txt
[2025-06-05 18:17:07] HITS file was successfully produced:
[2025-06-05 18:17:07] -rw------- 1 boinc boinc 182460228 Jun  5 18:14 shared/HITS.pool.root.1
[2025-06-05 18:17:07]  *** Contents of shared directory: ***
[2025-06-05 18:17:07] total 388096
[2025-06-05 18:17:07] -rw-r--r-- 2 boinc boinc 212719141 Jun  5 14:34 ATLAS.root_0
[2025-06-05 18:17:07] -rw-r--r-- 2 boinc boinc     15093 Jun  5 14:34 start_atlas.sh
[2025-06-05 18:17:07] -rw-r--r-- 2 boinc boinc    508875 Jun  5 14:34 input.tar.gz
[2025-06-05 18:17:07] -rw------- 1 boinc boinc 182460228 Jun  5 18:14 HITS.pool.root.1
[2025-06-05 18:17:07] -rw------- 1 boinc boinc   1689600 Jun  5 18:17 result.tar.gz
18:17:08 (1362366): run_atlas exited; CPU time 22493.574679
18:17:08 (1362366): called boinc_finish(0)

</stderr_txt>
]]>

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