Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
08:17:49 (1239172): wrapper (7.7.26015): starting
08:17:49 (1239172): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 08:17:49] Arguments: --nthreads 12
[2025-06-05 08:17:49] Threads: 12
[2025-06-05 08:17:49] Checking for CVMFS
[2025-06-05 08:17:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 08:17:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 08:17:49] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 08:17:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 08:17:49] 2.12.7.0 359462 2809 61032 146812 1 55 4056948 4096001 0 130560 0 2355108 99.992 640639 128 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 08:17:49] CVMFS is ok
[2025-06-05 08:17:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 08:17:49] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 08:17:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 08:17:49] Further information can be found at the LHC@home message board.
[2025-06-05 08:17:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:17:49] Checking for apptainer binary...
[2025-06-05 08:17:49] apptainer is not installed, using version from CVMFS
[2025-06-05 08:17:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:17:49] ggg3250
[2025-06-05 08:17:49] apptainer works
[2025-06-05 08:17:49] Set ATHENA_PROC_NUMBER=12
[2025-06-05 08:17:49] Set ATHENA_CORE_NUMBER=12
[2025-06-05 08:17:49] Starting ATLAS job with PandaID=6666596156
[2025-06-05 08:17:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:39:08]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:39:08] 2025-06-05 12:38:52,083 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 12:39:08] 2025-06-05 12:38:52,083 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6666596156/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 12:39:08] 2025-06-05 12:38:52,083 | INFO     | extracted standard info from prmon json
[2025-06-05 12:39:08] 2025-06-05 12:38:52,083 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:39:08] 2025-06-05 12:38:52,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:39:08] 2025-06-05 12:38:52,086 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:39:08] 2025-06-05 12:38:52,087 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:39:08] 2025-06-05 12:38:52,089 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:39:08] 2025-06-05 12:38:52,089 | INFO     | sum of square deviations: 5202254285.683594
[2025-06-05 12:39:08] 2025-06-05 12:38:52,090 | INFO     | sum of deviations: -27077567325.625
[2025-06-05 12:39:08] 2025-06-05 12:38:52,090 | INFO     | mean x: 1749119272.5351562
[2025-06-05 12:39:08] 2025-06-05 12:38:52,090 | INFO     | mean y: 2704701.625
[2025-06-05 12:39:08] 2025-06-05 12:38:52,090 | INFO     | -- intersect: 9106814624.309298
[2025-06-05 12:39:08] 2025-06-05 12:38:52,090 | INFO     | intersect: 9106814624.309298
[2025-06-05 12:39:08] 2025-06-05 12:38:52,090 | INFO     | chi2: 2.1043905765765176
[2025-06-05 12:39:08] 2025-06-05 12:38:52,110 | INFO     | sum of square deviations: 4903349100.677273
[2025-06-05 12:39:08] 2025-06-05 12:38:52,111 | INFO     | sum of deviations: -9095424711.183262
[2025-06-05 12:39:08] 2025-06-05 12:38:52,111 | INFO     | mean x: 1749119120.0358565
[2025-06-05 12:39:08] 2025-06-05 12:38:52,112 | INFO     | mean y: 2713735.131474104
[2025-06-05 12:39:08] 2025-06-05 12:38:52,112 | INFO     | -- intersect: 3247227013.816818
[2025-06-05 12:39:08] 2025-06-05 12:38:52,112 | INFO     | intersect: 3247227013.816818
[2025-06-05 12:39:08] 2025-06-05 12:38:52,112 | INFO     | chi2: 1.404697982552879
[2025-06-05 12:39:08] 2025-06-05 12:38:52,112 | INFO     | current chi2=1.404697982552879 (change=33.24917920711841 %)
[2025-06-05 12:39:08] 2025-06-05 12:38:52,112 | INFO     | sum of square deviations: 4616118553.170732
[2025-06-05 12:39:08] 2025-06-05 12:38:52,113 | INFO     | sum of deviations: -8856632659.878046
[2025-06-05 12:39:08] 2025-06-05 12:38:52,113 | INFO     | mean x: 1749118967.5365853
[2025-06-05 12:39:08] 2025-06-05 12:38:52,113 | INFO     | mean y: 2713861.9308943087
[2025-06-05 12:39:08] 2025-06-05 12:38:52,113 | INFO     | -- intersect: 3358629442.404013
[2025-06-05 12:39:08] 2025-06-05 12:38:52,113 | INFO     | intersect: 3358629442.404013
[2025-06-05 12:39:08] 2025-06-05 12:38:52,113 | INFO     | chi2: 1.4043437804752752
[2025-06-05 12:39:08] 2025-06-05 12:38:52,113 | INFO     | current chi2=1.4043437804752752 (change=0.02521553259156854 %)
[2025-06-05 12:39:08] 2025-06-05 12:38:52,113 | INFO     | right removable region: 245
[2025-06-05 12:39:08] 2025-06-05 12:38:52,114 | INFO     | sum of square deviations: 4903343610.677273
[2025-06-05 12:39:08] 2025-06-05 12:38:52,134 | INFO     | sum of deviations: -66581516251.56971
[2025-06-05 12:39:08] 2025-06-05 12:38:52,135 | INFO     | mean x: 1749119425.0358565
[2025-06-05 12:39:08] 2025-06-05 12:38:52,135 | INFO     | mean y: 2724689.952191235
[2025-06-05 12:39:08] 2025-06-05 12:38:52,135 | INFO     | -- intersect: 23753665409.33516
[2025-06-05 12:39:08] 2025-06-05 12:38:52,135 | INFO     | intersect: 23753665409.33516
[2025-06-05 12:39:08] 2025-06-05 12:38:52,135 | INFO     | chi2: 0.8161308208854587
[2025-06-05 12:39:08] 2025-06-05 12:38:52,135 | INFO     | current chi2=0.8161308208854587 (change=61.2177116753125 %)
[2025-06-05 12:39:08] 2025-06-05 12:38:52,135 | INFO     | sum of square deviations: 4616107573.170732
[2025-06-05 12:39:08] 2025-06-05 12:38:52,136 | INFO     | sum of deviations: -65795586418.14637
[2025-06-05 12:39:08] 2025-06-05 12:38:52,136 | INFO     | mean x: 1749119577.5365853
[2025-06-05 12:39:08] 2025-06-05 12:38:52,136 | INFO     | mean y: 2724258.6829268294
[2025-06-05 12:39:08] 2025-06-05 12:38:52,136 | INFO     | -- intersect: 24933761175.665005
[2025-06-05 12:39:08] 2025-06-05 12:38:52,136 | INFO     | intersect: 24933761175.665005
[2025-06-05 12:39:08] 2025-06-05 12:38:52,136 | INFO     | chi2: 0.8098175609676139
[2025-06-05 12:39:08] 2025-06-05 12:38:52,136 | INFO     | current chi2=0.8098175609676139 (change=0.77355979657713 %)
[2025-06-05 12:39:08] 2025-06-05 12:38:52,137 | INFO     | left removable region: 20
[2025-06-05 12:39:08] 2025-06-05 12:38:52,137 | INFO     | sum of square deviations: 3531966864.639996
[2025-06-05 12:39:08] 2025-06-05 12:38:52,137 | INFO     | sum of deviations: -39266409723.79999
[2025-06-05 12:39:08] 2025-06-05 12:38:52,137 | INFO     | mean x: 1749119547.04
[2025-06-05 12:39:08] 2025-06-05 12:38:52,137 | INFO     | mean y: 2730189.422222222
[2025-06-05 12:39:08] 2025-06-05 12:38:52,138 | INFO     | -- intersect: 19448451913.932404
[2025-06-05 12:39:08] 2025-06-05 12:38:52,138 | INFO     | intersect: 19448451913.932404
[2025-06-05 12:39:08] 2025-06-05 12:38:52,138 | INFO     | chi2: 0.09140751558638582
[2025-06-05 12:39:08] 2025-06-05 12:38:52,138 | INFO     | -- intersect: 19448451913.932404
[2025-06-05 12:39:08] 2025-06-05 12:38:52,138 | INFO     | current memory leak: -11.12 B/s (using 225 data points, chi2=0.09)
[2025-06-05 12:39:08] 2025-06-05 12:38:52,138 | INFO     | ..............................
[2025-06-05 12:39:08] 2025-06-05 12:38:52,138 | INFO     | . Timing measurements:
[2025-06-05 12:39:08] 2025-06-05 12:38:52,138 | INFO     | . get job = 0 s
[2025-06-05 12:39:08] 2025-06-05 12:38:52,138 | INFO     | . initial setup = 2 s
[2025-06-05 12:39:08] 2025-06-05 12:38:52,146 | INFO     | . payload setup = 2 s
[2025-06-05 12:39:08] 2025-06-05 12:38:52,147 | INFO     | . stage-in = 0 s
[2025-06-05 12:39:08] 2025-06-05 12:38:52,147 | INFO     | . payload execution = 15581 s
[2025-06-05 12:39:08] 2025-06-05 12:38:52,147 | INFO     | . stage-out = 2 s
[2025-06-05 12:39:08] 2025-06-05 12:38:52,147 | INFO     | . log creation = 0 s
[2025-06-05 12:39:08] 2025-06-05 12:38:52,147 | INFO     | ..............................
[2025-06-05 12:39:08] 2025-06-05 12:38:52,323 | INFO     | 
[2025-06-05 12:39:08] 2025-06-05 12:38:52,324 | INFO     | job summary report
[2025-06-05 12:39:08] 2025-06-05 12:38:52,324 | INFO     | --------------------------------------------------
[2025-06-05 12:39:08] 2025-06-05 12:38:52,324 | INFO     | PanDA job id: 6666596156
[2025-06-05 12:39:08] 2025-06-05 12:38:52,324 | INFO     | task id: 44871837
[2025-06-05 12:39:08] 2025-06-05 12:38:52,324 | INFO     | errors: (none)
[2025-06-05 12:39:08] 2025-06-05 12:38:52,324 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:39:08] 2025-06-05 12:38:52,324 | INFO     | pilot state: finished 
[2025-06-05 12:39:08] 2025-06-05 12:38:52,324 | INFO     | transexitcode: 0
[2025-06-05 12:39:08] 2025-06-05 12:38:52,324 | INFO     | exeerrorcode: 0
[2025-06-05 12:39:08] 2025-06-05 12:38:52,325 | INFO     | exeerrordiag: 
[2025-06-05 12:39:08] 2025-06-05 12:38:52,325 | INFO     | exitcode: 0
[2025-06-05 12:39:08] 2025-06-05 12:38:52,325 | INFO     | exitmsg: OK
[2025-06-05 12:39:08] 2025-06-05 12:38:52,325 | INFO     | cpuconsumptiontime: 30907 s
[2025-06-05 12:39:08] 2025-06-05 12:38:52,325 | INFO     | nevents: 400
[2025-06-05 12:39:08] 2025-06-05 12:38:52,330 | INFO     | neventsw: 0
[2025-06-05 12:39:08] 2025-06-05 12:38:52,331 | INFO     | pid: 1259177
[2025-06-05 12:39:08] 2025-06-05 12:38:52,331 | INFO     | pgrp: 1259177
[2025-06-05 12:39:08] 2025-06-05 12:38:52,331 | INFO     | corecount: 12
[2025-06-05 12:39:08] 2025-06-05 12:38:52,331 | INFO     | event service: False
[2025-06-05 12:39:08] 2025-06-05 12:38:52,331 | INFO     | sizes: {0: 2397364, 1: 2397364, 2: 2397598, 11: 2397626, 15588: 2428527, 15591: 2437514, 15592: 2437698, 15644: 2437868}
[2025-06-05 12:39:08] 2025-06-05 12:38:52,331 | INFO     | --------------------------------------------------
[2025-06-05 12:39:08] 2025-06-05 12:38:52,331 | INFO     | 
[2025-06-05 12:39:08] 2025-06-05 12:38:52,331 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/0
[2025-06-05 12:39:08] 2025-06-05 12:38:52,360 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,360 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:39:08] 2025-06-05 12:38:52,361 | INFO     | job 6666596156 has completed (purged errors)
[2025-06-05 12:39:08] 2025-06-05 12:38:52,362 | INFO     | overall cleanup function is called
[2025-06-05 12:39:08] 2025-06-05 12:38:53,378 | INFO     | --- collectZombieJob: --- 10, [1259177]
[2025-06-05 12:39:08] 2025-06-05 12:38:53,379 | INFO     | zombie collector waiting for pid 1259177
[2025-06-05 12:39:08] 2025-06-05 12:38:53,379 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:39:08] 2025-06-05 12:38:53,379 | INFO     | collected zombie processes
[2025-06-05 12:39:08] 2025-06-05 12:38:53,379 | INFO     | will attempt to kill all subprocesses of pid=1259177
[2025-06-05 12:39:08] 2025-06-05 12:38:53,513 | INFO     | process IDs to be killed: [1259177] (in reverse order)
[2025-06-05 12:39:08] 2025-06-05 12:38:54,039 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:39:08] 2025-06-05 12:38:54,039 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:39:08] 2025-06-05 12:38:54,040 | INFO     | did not find any defunct processes belonging to 1259177
[2025-06-05 12:39:08] 2025-06-05 12:38:54,041 | INFO     | did not find any defunct processes belonging to 1259177
[2025-06-05 12:39:08] 2025-06-05 12:38:54,041 | INFO     | ready for new job
[2025-06-05 12:39:08] 2025-06-05 12:38:54,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:39:08] 2025-06-05 12:38:54,055 | INFO     | **************************************
[2025-06-05 12:39:08] 2025-06-05 12:38:54,055 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:39:08] 2025-06-05 12:38:54,055 | INFO     | **************************************
[2025-06-05 12:39:08] 2025-06-05 12:38:54,055 | INFO     | 
[2025-06-05 12:39:08] 2025-06-05 12:38:54,075 | INFO     | architecture information:
[2025-06-05 12:39:08] 2025-06-05 12:38:54,083 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:39:08] 2025-06-05 12:38:54,159 | INFO     | cat /etc/os-release:
[2025-06-05 12:39:08] NAME="CentOS Linux"
[2025-06-05 12:39:08] VERSION="7 (Core)"
[2025-06-05 12:39:08] ID="centos"
[2025-06-05 12:39:08] ID_LIKE="rhel fedora"
[2025-06-05 12:39:08] VERSION_ID="7"
[2025-06-05 12:39:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:39:08] ANSI_COLOR="0;31"
[2025-06-05 12:39:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:39:08] HOME_URL="https://www.centos.org/"
[2025-06-05 12:39:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:39:08] 
[2025-06-05 12:39:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:39:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:39:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:39:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:39:08] 
[2025-06-05 12:39:08] 2025-06-05 12:38:54,159 | INFO     | **************************************
[2025-06-05 12:39:08] 2025-06-05 12:38:54,660 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/0
[2025-06-05 12:39:08] 2025-06-05 12:38:54,711 | INFO     | sufficient remaining disk space (186668548096 B)
[2025-06-05 12:39:08] 2025-06-05 12:38:54,711 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:39:08] 2025-06-05 12:38:54,711 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:39:08] 2025-06-05 12:38:54,711 | INFO     | update_server=False
[2025-06-05 12:39:08] 2025-06-05 12:38:54,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:39:08] 2025-06-05 12:38:54,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:39:08] 2025-06-05 12:38:54,711 | INFO     | aborting loop
[2025-06-05 12:39:08] 2025-06-05 12:38:54,915 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:39:08] 2025-06-05 12:38:54,915 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:39:08] 2025-06-05 12:38:54,915 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:39:08] 2025-06-05 12:38:55,342 | INFO     | all payload control threads have been joined
[2025-06-05 12:39:08] 2025-06-05 12:38:55,594 | INFO     | all data control threads have been joined
[2025-06-05 12:39:08] 2025-06-05 12:38:55,715 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:55,715 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:55,776 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:55,798 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:39:08] 2025-06-05 12:38:55,830 | INFO     | all job control threads have been joined
[2025-06-05 12:39:08] 2025-06-05 12:38:55,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:39:08] 2025-06-05 12:38:56,054 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:56,067 | INFO     | [job] validate thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:56,114 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:56,150 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:56,350 | INFO     | [payload] control thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:56,598 | INFO     | [data] control thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:56,738 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:56,838 | INFO     | [job] control thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:56,882 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:56,966 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:57,342 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:39:08] 2025-06-05 12:38:57,806 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:58,350 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:38:59,954 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:39:08] 2025-06-05 12:39:01,954 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139671565457216)>', '<ExcThread(monitor, started 139670851675904)>']
[2025-06-05 12:39:08] 2025-06-05 12:39:02,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:39:08] 2025-06-05 12:39:02,947 | INFO     | [monitor] control thread has ended
[2025-06-05 12:39:08] 2025-06-05 12:39:06,978 | INFO     | all workflow threads have been joined
[2025-06-05 12:39:08] 2025-06-05 12:39:06,979 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:39:08] 2025-06-05 12:39:06,979 | INFO     | traces error code: 0
[2025-06-05 12:39:08] 2025-06-05 12:39:06,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:39:08] 2025-06-05 12:39:07,302 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:39:08] 2025-06-05 12:39:07,346 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:39:08] 2025-06-05 12:39:07,375 [wrapper] pilotpid: 1245927
[2025-06-05 12:39:08] 2025-06-05 12:39:07,399 [wrapper] Pilot exit status: 0
[2025-06-05 12:39:08] 2025-06-05 12:39:07,538 [wrapper] pandaids: 6666596156
[2025-06-05 12:39:08] 2025-06-05 12:39:07,728 [wrapper] cleanup supervisor_pilot 1325510 1245929
[2025-06-05 12:39:08] 2025-06-05 12:39:07,747 [wrapper] Test setup, not cleaning
[2025-06-05 12:39:08] 2025-06-05 12:39:07,763 [wrapper] apfmon messages muted
[2025-06-05 12:39:08] 2025-06-05 12:39:07,779 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:39:08] 2025-06-05 12:39:07,795 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:39:08]  *** Error codes and diagnostics ***
[2025-06-05 12:39:08]     "exeErrorCode": 0,
[2025-06-05 12:39:08]     "exeErrorDiag": "",
[2025-06-05 12:39:08]     "pilotErrorCode": 0,
[2025-06-05 12:39:08]     "pilotErrorDiag": "",
[2025-06-05 12:39:08]  *** Listing of results directory ***
[2025-06-05 12:39:08] total 421680
[2025-06-05 12:39:08] -rw-r--r-- 1 boinc boinc      5111 Mai 27 02:15 queuedata.json
[2025-06-05 12:39:08] -rw-r--r-- 1 boinc boinc    495897 Mai 27 02:15 pilot3.tar.gz
[2025-06-05 12:39:08] -rwx------ 1 boinc boinc     37140 Mai 27 02:16 runpilot2-wrapper.sh
[2025-06-05 12:39:08] -rw-rw-r-- 1 boinc boinc       100 Jun  5 08:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:39:08] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 08:17 run_atlas
[2025-06-05 12:39:08] -rw-rw-r-- 1 boinc boinc       105 Jun  5 08:17 job.xml
[2025-06-05 12:39:08] -rw-rw-r-- 1 boinc boinc      9361 Jun  5 08:17 init_data.xml
[2025-06-05 12:39:08] -rw-r--r-- 2 boinc boinc 225294725 Jun  5 08:17 EVNT.44871834._002396.pool.root.1
[2025-06-05 12:39:08] -rw-r--r-- 2 boinc boinc     15093 Jun  5 08:17 start_atlas.sh
[2025-06-05 12:39:08] drwxrwx--x 2 boinc boinc      4096 Jun  5 08:17 shared
[2025-06-05 12:39:08] -rw-r--r-- 2 boinc boinc    508874 Jun  5 08:17 input.tar.gz
[2025-06-05 12:39:08] -rw-rw-r-- 1 boinc boinc         0 Jun  5 08:17 boinc_lockfile
[2025-06-05 12:39:08] -rw-rw-r-- 1 boinc boinc      2558 Jun  5 08:17 pandaJob.out
[2025-06-05 12:39:08] -rw------- 1 boinc boinc    983281 Jun  5 08:17 agis_schedconf.cvmfs.json
[2025-06-05 12:39:08] drwx------ 4 boinc boinc      4096 Jun  5 08:17 pilot3
[2025-06-05 12:39:08] -rw------- 1 boinc boinc 198795226 Jun  5 12:36 HITS.44871837._060651.pool.root.1
[2025-06-05 12:39:08] -rw-rw-r-- 1 boinc boinc       530 Jun  5 12:37 boinc_task_state.xml
[2025-06-05 12:39:08] -rw------- 1 boinc boinc      1021 Jun  5 12:37 memory_monitor_summary.json
[2025-06-05 12:39:08] -rw------- 1 boinc boinc   1598969 Jun  5 12:37 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:39:08] -rw------- 1 boinc boinc    473544 Jun  5 12:37 log.44871837._060651.job.log.tgz.1
[2025-06-05 12:39:08] -rw------- 1 boinc boinc        95 Jun  5 12:38 pilot_heartbeat.json
[2025-06-05 12:39:08] -rw------- 1 boinc boinc      7667 Jun  5 12:38 heartbeat.json
[2025-06-05 12:39:08] -rw-rw-r-- 1 boinc boinc      8192 Jun  5 12:38 boinc_mmap_file
[2025-06-05 12:39:08] -rw-rw-r-- 1 boinc boinc        28 Jun  5 12:38 wrapper_checkpoint.txt
[2025-06-05 12:39:08] -rw------- 1 boinc boinc      4377 Jun  5 12:39 pilotlog.txt
[2025-06-05 12:39:08] -rw------- 1 boinc boinc   1462523 Jun  5 12:39 log.44871837._060651.job.log.1
[2025-06-05 12:39:08] -rw------- 1 boinc boinc       357 Jun  5 12:39 output.list
[2025-06-05 12:39:08] -rw-rw-r-- 1 boinc boinc       620 Jun  5 12:39 runtime_log
[2025-06-05 12:39:08] -rw------- 1 boinc boinc   1955840 Jun  5 12:39 result.tar.gz
[2025-06-05 12:39:08] -rw-rw-r-- 1 boinc boinc      8959 Jun  5 12:39 runtime_log.err
[2025-06-05 12:39:08] -rw------- 1 boinc boinc       654 Jun  5 12:39 DwyLDme2yd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuIYKDmhDPsPo.diag
[2025-06-05 12:39:08] -rw-rw-r-- 1 boinc boinc     21037 Jun  5 12:39 stderr.txt
[2025-06-05 12:39:08] HITS file was successfully produced:
[2025-06-05 12:39:08] -rw------- 1 boinc boinc 198795226 Jun  5 12:36 shared/HITS.pool.root.1
[2025-06-05 12:39:08]  *** Contents of shared directory: ***
[2025-06-05 12:39:08] total 416588
[2025-06-05 12:39:08] -rw-r--r-- 2 boinc boinc 225294725 Jun  5 08:17 ATLAS.root_0
[2025-06-05 12:39:08] -rw-r--r-- 2 boinc boinc     15093 Jun  5 08:17 start_atlas.sh
[2025-06-05 12:39:08] -rw-r--r-- 2 boinc boinc    508874 Jun  5 08:17 input.tar.gz
[2025-06-05 12:39:08] -rw------- 1 boinc boinc 198795226 Jun  5 12:36 HITS.pool.root.1
[2025-06-05 12:39:08] -rw------- 1 boinc boinc   1955840 Jun  5 12:39 result.tar.gz
12:39:09 (1239172): run_atlas exited; CPU time 30965.509055
12:39:09 (1239172): called boinc_finish(0)

</stderr_txt>
]]>

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