Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:20:19 (1578934): wrapper (7.7.26015): starting
04:20:19 (1578934): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 04:20:19] Arguments: --nthreads 4
[2025-06-05 04:20:19] Threads: 4
[2025-06-05 04:20:19] Checking for CVMFS
[2025-06-05 04:20:19] No cvmfs_config command found, will try listing directly
[2025-06-05 04:20:19] CVMFS is ok
[2025-06-05 04:20:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 04:20:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 04:20:19] Further information can be found at the LHC@home message board.
[2025-06-05 04:20:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 04:20:19] Checking for apptainer binary...
[2025-06-05 04:20:19] which: no apptainer in ((null))
[2025-06-05 04:20:19] apptainer is not installed, using version from CVMFS
[2025-06-05 04:20:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 04:20:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-06-05 04:20:19] apptainer works
[2025-06-05 04:20:19] Set ATHENA_PROC_NUMBER=4
[2025-06-05 04:20:19] Set ATHENA_CORE_NUMBER=4
[2025-06-05 04:20:19] Starting ATLAS job with PandaID=6677578684
[2025-06-05 04:20:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 07:04:42]  *** The last 200 lines of the pilot log: ***
[2025-06-05 07:04:42] 2025-06-05 05:03:42,539 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3825421/.job.ad'
[2025-06-05 07:04:42] 2025-06-05 05:03:42,539 | INFO     | total number of processed events: 400 (read)
[2025-06-05 07:04:42] 2025-06-05 05:03:42,543 | INFO     | executing command: lscpu
[2025-06-05 07:04:42] 2025-06-05 05:03:42,603 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 07:04:42] 2025-06-05 05:03:44,780 | INFO     | monitor loop #710: job 0:6677578684 is in state 'finished'
[2025-06-05 07:04:42] 2025-06-05 05:03:44,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 07:04:42] 2025-06-05 05:03:46,939 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 07:04:42] 2025-06-05 05:03:46,939 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6677578684/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 07:04:42] 2025-06-05 05:03:46,940 | INFO     | extracted standard info from prmon json
[2025-06-05 07:04:42] 2025-06-05 05:03:46,941 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 07:04:42] 2025-06-05 05:03:46,941 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 07:04:42] 2025-06-05 05:03:46,941 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 07:04:42] 2025-06-05 05:03:46,941 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 07:04:42] 2025-06-05 05:03:46,946 | INFO     | fitting pss+swap vs Time
[2025-06-05 07:04:42] 2025-06-05 05:03:46,947 | INFO     | sum of square deviations: 1270051720.0
[2025-06-05 07:04:42] 2025-06-05 05:03:46,948 | INFO     | sum of deviations: 15826528567.999998
[2025-06-05 07:04:42] 2025-06-05 05:03:46,948 | INFO     | mean x: 1749094909.5
[2025-06-05 07:04:42] 2025-06-05 05:03:46,948 | INFO     | mean y: 2309821.8
[2025-06-05 07:04:42] 2025-06-05 05:03:46,948 | INFO     | -- intersect: -21793732116.826817
[2025-06-05 07:04:42] 2025-06-05 05:03:46,948 | INFO     | intersect: -21793732116.826817
[2025-06-05 07:04:42] 2025-06-05 05:03:46,949 | INFO     | chi2: 1.5223115631924722
[2025-06-05 07:04:42] 2025-06-05 05:03:46,949 | INFO     | sum of square deviations: 1154663510.0
[2025-06-05 07:04:42] 2025-06-05 05:03:46,950 | INFO     | sum of deviations: 15287590640.000002
[2025-06-05 07:04:42] 2025-06-05 05:03:46,950 | INFO     | mean x: 1749094757.0
[2025-06-05 07:04:42] 2025-06-05 05:03:46,950 | INFO     | mean y: 2309109.3483870965
[2025-06-05 07:04:42] 2025-06-05 05:03:46,950 | INFO     | -- intersect: -23155471840.693306
[2025-06-05 07:04:42] 2025-06-05 05:03:46,951 | INFO     | intersect: -23155471840.693306
[2025-06-05 07:04:42] 2025-06-05 05:03:46,951 | INFO     | chi2: 1.5238943282971293
[2025-06-05 07:04:42] 2025-06-05 05:03:46,951 | INFO     | current chi2=1.5238943282971293 (change=-0.10397116746179785 %)
[2025-06-05 07:04:42] 2025-06-05 05:03:46,951 | INFO     | right removable region: 154
[2025-06-05 07:04:42] 2025-06-05 05:03:46,951 | INFO     | sum of square deviations: 1154663510.0
[2025-06-05 07:04:42] 2025-06-05 05:03:46,952 | INFO     | sum of deviations: -9021666736.0
[2025-06-05 07:04:42] 2025-06-05 05:03:46,953 | INFO     | mean x: 1749095062.0
[2025-06-05 07:04:42] 2025-06-05 05:03:46,953 | INFO     | mean y: 2342295.464516129
[2025-06-05 07:04:42] 2025-06-05 05:03:46,953 | INFO     | -- intersect: 13668447270.884808
[2025-06-05 07:04:42] 2025-06-05 05:03:46,953 | INFO     | intersect: 13668447270.884808
[2025-06-05 07:04:42] 2025-06-05 05:03:46,953 | INFO     | chi2: 0.0165267100756413
[2025-06-05 07:04:42] 2025-06-05 05:03:46,953 | INFO     | current chi2=0.0165267100756413 (change=98.91436743468054 %)
[2025-06-05 07:04:42] 2025-06-05 05:03:46,954 | INFO     | sum of square deviations: 1046484737.5
[2025-06-05 07:04:42] 2025-06-05 05:03:46,955 | INFO     | sum of deviations: -7966649501.5
[2025-06-05 07:04:42] 2025-06-05 05:03:46,955 | INFO     | mean x: 1749095214.5
[2025-06-05 07:04:42] 2025-06-05 05:03:46,955 | INFO     | mean y: 2340779.78
[2025-06-05 07:04:42] 2025-06-05 05:03:46,955 | INFO     | -- intersect: 13317803508.802803
[2025-06-05 07:04:42] 2025-06-05 05:03:46,955 | INFO     | intersect: 13317803508.802803
[2025-06-05 07:04:42] 2025-06-05 05:03:46,955 | INFO     | chi2: 0.013027381049810414
[2025-06-05 07:04:42] 2025-06-05 05:03:46,956 | INFO     | current chi2=0.013027381049810414 (change=21.17377874855167 %)
[2025-06-05 07:04:42] 2025-06-05 05:03:46,956 | INFO     | left removable region: 20
[2025-06-05 07:04:42] 2025-06-05 05:03:46,956 | INFO     | sum of square deviations: 746051197.5
[2025-06-05 07:04:42] 2025-06-05 05:03:46,957 | INFO     | sum of deviations: -4129538197.4999995
[2025-06-05 07:04:42] 2025-06-05 05:03:46,957 | INFO     | mean x: 1749095336.5
[2025-06-05 07:04:42] 2025-06-05 05:03:46,957 | INFO     | mean y: 2335110.843283582
[2025-06-05 07:04:42] 2025-06-05 05:03:46,957 | INFO     | -- intersect: 9683917323.096035
[2025-06-05 07:04:42] 2025-06-05 05:03:46,957 | INFO     | intersect: 9683917323.096035
[2025-06-05 07:04:42] 2025-06-05 05:03:46,958 | INFO     | chi2: 0.004963685040555959
[2025-06-05 07:04:42] 2025-06-05 05:03:46,958 | INFO     | -- intersect: 9683917323.096035
[2025-06-05 07:04:42] 2025-06-05 05:03:46,958 | INFO     | current memory leak: -5.54 B/s (using 134 data points, chi2=0.00)
[2025-06-05 07:04:42] 2025-06-05 05:03:46,959 | INFO     | ..............................
[2025-06-05 07:04:42] 2025-06-05 05:03:46,959 | INFO     | . Timing measurements:
[2025-06-05 07:04:42] 2025-06-05 05:03:46,959 | INFO     | . get job = 0 s
[2025-06-05 07:04:42] 2025-06-05 05:03:46,959 | INFO     | . initial setup = 1 s
[2025-06-05 07:04:42] 2025-06-05 05:03:46,959 | INFO     | . payload setup = 7 s
[2025-06-05 07:04:42] 2025-06-05 05:03:46,959 | INFO     | . stage-in = 0 s
[2025-06-05 07:04:42] 2025-06-05 05:03:46,959 | INFO     | . payload execution = 9759 s
[2025-06-05 07:04:42] 2025-06-05 05:03:46,959 | INFO     | . stage-out = 1 s
[2025-06-05 07:04:42] 2025-06-05 05:03:46,959 | INFO     | . log creation = 0 s
[2025-06-05 07:04:42] 2025-06-05 05:03:46,960 | INFO     | ..............................
[2025-06-05 07:04:42] 2025-06-05 05:03:47,081 | INFO     | 
[2025-06-05 07:04:42] 2025-06-05 05:03:47,082 | INFO     | job summary report
[2025-06-05 07:04:42] 2025-06-05 05:03:47,082 | INFO     | --------------------------------------------------
[2025-06-05 07:04:42] 2025-06-05 05:03:47,082 | INFO     | PanDA job id: 6677578684
[2025-06-05 07:04:42] 2025-06-05 05:03:47,082 | INFO     | task id: 45006595
[2025-06-05 07:04:42] 2025-06-05 05:03:47,082 | INFO     | errors: (none)
[2025-06-05 07:04:42] 2025-06-05 05:03:47,082 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 07:04:42] 2025-06-05 05:03:47,082 | INFO     | pilot state: finished 
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | transexitcode: 0
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | exeerrorcode: 0
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | exeerrordiag: 
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | exitcode: 0
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | exitmsg: OK
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | cpuconsumptiontime: 37418 s
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | nevents: 400
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | neventsw: 0
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | pid: 1589921
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | pgrp: 1589921
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | corecount: 4
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | event service: False
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | sizes: {0: 2397302, 1: 2397302, 5: 2397536, 11: 2397592, 9770: 2425997, 9772: 2434960, 9774: 2435144, 9779: 2435314}
[2025-06-05 07:04:42] 2025-06-05 05:03:47,083 | INFO     | --------------------------------------------------
[2025-06-05 07:04:42] 2025-06-05 05:03:47,084 | INFO     | 
[2025-06-05 07:04:42] 2025-06-05 05:03:47,084 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2025-06-05 07:04:42] 2025-06-05 05:03:47,106 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,107 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,107 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,107 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,107 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,107 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,107 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,108 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 07:04:42] 2025-06-05 05:03:47,109 | INFO     | job 6677578684 has completed (purged errors)
[2025-06-05 07:04:42] 2025-06-05 05:03:47,109 | INFO     | overall cleanup function is called
[2025-06-05 07:04:42] 2025-06-05 05:03:48,116 | INFO     | --- collectZombieJob: --- 10, [1589921]
[2025-06-05 07:04:42] 2025-06-05 05:03:48,117 | INFO     | zombie collector waiting for pid 1589921
[2025-06-05 07:04:42] 2025-06-05 05:03:48,117 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 07:04:42] 2025-06-05 05:03:48,117 | INFO     | collected zombie processes
[2025-06-05 07:04:42] 2025-06-05 05:03:48,117 | INFO     | will attempt to kill all subprocesses of pid=1589921
[2025-06-05 07:04:42] 2025-06-05 05:03:48,532 | INFO     | process IDs to be killed: [1589921] (in reverse order)
[2025-06-05 07:04:42] 2025-06-05 05:03:48,661 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 07:04:42] 2025-06-05 05:03:48,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 07:04:42] 2025-06-05 05:03:48,676 | INFO     | did not find any defunct processes belonging to 1589921
[2025-06-05 07:04:42] 2025-06-05 05:03:48,691 | INFO     | did not find any defunct processes belonging to 1589921
[2025-06-05 07:04:42] 2025-06-05 05:03:48,691 | INFO     | ready for new job
[2025-06-05 07:04:42] 2025-06-05 05:03:48,691 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 07:04:42] 2025-06-05 05:03:48,693 | INFO     | **************************************
[2025-06-05 07:04:42] 2025-06-05 05:03:48,694 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 07:04:42] 2025-06-05 05:03:48,694 | INFO     | **************************************
[2025-06-05 07:04:42] 2025-06-05 05:03:48,694 | INFO     | 
[2025-06-05 07:04:42] 2025-06-05 05:03:48,698 | INFO     | architecture information:
[2025-06-05 07:04:42] 2025-06-05 05:03:48,699 | INFO     | executing command: cat /etc/os-release
[2025-06-05 07:04:42] 2025-06-05 05:03:48,714 | INFO     | cat /etc/os-release:
[2025-06-05 07:04:42] NAME="CentOS Linux"
[2025-06-05 07:04:42] VERSION="7 (Core)"
[2025-06-05 07:04:42] ID="centos"
[2025-06-05 07:04:42] ID_LIKE="rhel fedora"
[2025-06-05 07:04:42] VERSION_ID="7"
[2025-06-05 07:04:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 07:04:42] ANSI_COLOR="0;31"
[2025-06-05 07:04:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 07:04:42] HOME_URL="https://www.centos.org/"
[2025-06-05 07:04:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 07:04:42] 
[2025-06-05 07:04:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 07:04:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 07:04:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 07:04:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 07:04:42] 
[2025-06-05 07:04:42] 2025-06-05 05:03:48,715 | INFO     | **************************************
[2025-06-05 07:04:42] 2025-06-05 05:03:49,218 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2025-06-05 07:04:42] 2025-06-05 05:03:49,240 | INFO     | sufficient remaining disk space (661666136064 B)
[2025-06-05 07:04:42] 2025-06-05 05:03:49,240 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 07:04:42] 2025-06-05 05:03:49,240 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 07:04:42] 2025-06-05 05:03:49,240 | INFO     | update_server=False
[2025-06-05 07:04:42] 2025-06-05 05:03:49,241 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 07:04:42] 2025-06-05 05:03:49,241 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 07:04:42] 2025-06-05 05:03:49,241 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:04:42] 2025-06-05 05:03:49,242 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 07:04:42] 2025-06-05 05:03:49,242 | INFO     | aborting loop
[2025-06-05 07:04:42] 2025-06-05 05:03:49,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 07:04:42] 2025-06-05 05:03:49,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 07:04:42] 2025-06-05 05:03:50,063 | INFO     | all data control threads have been joined
[2025-06-05 07:04:42] 2025-06-05 05:03:50,124 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 07:04:42] 2025-06-05 05:03:50,246 | INFO     | [job] retrieve thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:50,247 | INFO     | [job] job monitor thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:50,277 | INFO     | all job control threads have been joined
[2025-06-05 07:04:42] 2025-06-05 05:03:50,548 | INFO     | [payload] validate_post thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:50,659 | INFO     | all payload control threads have been joined
[2025-06-05 07:04:42] 2025-06-05 05:03:50,944 | INFO     | [job] validate thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:51,069 | INFO     | [data] control thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:51,072 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:51,106 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:51,131 | INFO     | [payload] failed_post thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:51,283 | INFO     | [job] control thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:51,335 | INFO     | [data] copytool_in thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:51,419 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:51,666 | INFO     | [payload] control thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:52,091 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:04:42] 2025-06-05 05:03:52,129 | INFO     | [data] copytool_out thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:52,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 07:04:42] 2025-06-05 05:03:53,097 | INFO     | [job] queue monitor thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:03:56,515 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:04:00,247 | INFO     | job.realtimelogging is not enabled
[2025-06-05 07:04:42] 2025-06-05 05:04:01,252 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 07:04:42] 2025-06-05 05:04:02,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22719140214592)>', '<ExcThread(monitor, started 22718420330240)>']
[2025-06-05 07:04:42] 2025-06-05 05:04:02,307 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 07:04:42] 2025-06-05 05:04:02,308 | INFO     | [monitor] control thread has ended
[2025-06-05 07:04:42] 2025-06-05 05:04:07,314 | INFO     | all workflow threads have been joined
[2025-06-05 07:04:42] 2025-06-05 05:04:07,315 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 07:04:42] 2025-06-05 05:04:07,315 | INFO     | traces error code: 0
[2025-06-05 07:04:42] 2025-06-05 05:04:07,315 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 07:04:42] 2025-06-05 05:04:07,515 [wrapper] ==== pilot stdout END ====
[2025-06-05 07:04:42] 2025-06-05 05:04:07,518 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 07:04:42] 2025-06-05 05:04:07,521 [wrapper] pilotpid: 1582936
[2025-06-05 07:04:42] 2025-06-05 05:04:07,523 [wrapper] Pilot exit status: 0
[2025-06-05 07:04:42] 2025-06-05 05:04:07,535 [wrapper] pandaids: 6677578684
[2025-06-05 07:04:42] 2025-06-05 05:04:07,607 [wrapper] cleanup supervisor_pilot 1882745 1582937
[2025-06-05 07:04:42] 2025-06-05 05:04:07,611 [wrapper] Test setup, not cleaning
[2025-06-05 07:04:42] 2025-06-05 05:04:07,614 [wrapper] apfmon messages muted
[2025-06-05 07:04:42] 2025-06-05 05:04:07,617 [wrapper] ==== wrapper stdout END ====
[2025-06-05 07:04:42] 2025-06-05 05:04:07,619 [wrapper] ==== wrapper stderr END ====
[2025-06-05 07:04:42]  *** Error codes and diagnostics ***
[2025-06-05 07:04:42]     "exeErrorCode": 0,
[2025-06-05 07:04:42]     "exeErrorDiag": "",
[2025-06-05 07:04:42]     "pilotErrorCode": 0,
[2025-06-05 07:04:42]     "pilotErrorDiag": "",
[2025-06-05 07:04:42]  *** Listing of results directory ***
[2025-06-05 07:04:42] total 385704
[2025-06-05 07:04:42] -rwx------ 1 boinc boinc     37140 Jun  3 12:57 runpilot2-wrapper.sh
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc      5111 Jun  3 12:57 queuedata.json
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc    495897 Jun  3 12:57 pilot3.tar.gz
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc       100 Jun  5 04:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 07:04:42] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 04:20 run_atlas
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc       105 Jun  5 04:20 job.xml
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc      6635 Jun  5 04:20 init_data.xml
[2025-06-05 07:04:42] -rw-r--r-- 2 boinc boinc 214851549 Jun  5 04:20 EVNT.45006593._001185.pool.root.1
[2025-06-05 07:04:42] -rw-r--r-- 2 boinc boinc     15093 Jun  5 04:20 start_atlas.sh
[2025-06-05 07:04:42] drwxrwx--x 2 boinc boinc      4096 Jun  5 04:20 shared
[2025-06-05 07:04:42] -rw-r--r-- 2 boinc boinc    508877 Jun  5 04:20 input.tar.gz
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc         0 Jun  5 04:20 boinc_lockfile
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc      2524 Jun  5 04:20 pandaJob.out
[2025-06-05 07:04:42] -rw------- 1 boinc boinc    987109 Jun  5 04:20 agis_schedconf.cvmfs.json
[2025-06-05 07:04:42] -rw------- 1 boinc boinc   1598969 Jun  5 04:20 agis_ddmendpoints.agis.ALL.json
[2025-06-05 07:04:42] drwx------ 4 boinc boinc      4096 Jun  5 04:20 pilot3
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc       528 Jun  5 07:03 boinc_task_state.xml
[2025-06-05 07:04:42] -rw------- 1 boinc boinc 173833270 Jun  5 07:03 HITS.45006595._029643.pool.root.1
[2025-06-05 07:04:42] -rw------- 1 boinc boinc        95 Jun  5 07:03 pilot_heartbeat.json
[2025-06-05 07:04:42] -rw------- 1 boinc boinc      1034 Jun  5 07:03 memory_monitor_summary.json
[2025-06-05 07:04:42] -rw------- 1 boinc boinc    300233 Jun  5 07:03 log.45006595._029643.job.log.tgz.1
[2025-06-05 07:04:42] -rw------- 1 boinc boinc      7723 Jun  5 07:03 heartbeat.json
[2025-06-05 07:04:42] -rw------- 1 boinc boinc      4558 Jun  5 07:04 pilotlog.txt
[2025-06-05 07:04:42] -rw------- 1 boinc boinc    921802 Jun  5 07:04 log.45006595._029643.job.log.1
[2025-06-05 07:04:42] -rw------- 1 boinc boinc       357 Jun  5 07:04 output.list
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc       620 Jun  5 07:04 runtime_log
[2025-06-05 07:04:42] -rw------- 1 boinc boinc   1239040 Jun  5 07:04 result.tar.gz
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc      9025 Jun  5 07:04 runtime_log.err
[2025-06-05 07:04:42] -rw------- 1 boinc boinc       663 Jun  5 07:04 P5tMDm8Veg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXbjKDmwyKijn.diag
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc        26 Jun  5 07:04 wrapper_checkpoint.txt
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc      8192 Jun  5 07:04 boinc_mmap_file
[2025-06-05 07:04:42] -rw-r--r-- 1 boinc boinc     20936 Jun  5 07:04 stderr.txt
[2025-06-05 07:04:42] HITS file was successfully produced:
[2025-06-05 07:04:42] -rw------- 1 boinc boinc 173833270 Jun  5 07:03 shared/HITS.pool.root.1
[2025-06-05 07:04:42]  *** Contents of shared directory: ***
[2025-06-05 07:04:42] total 381312
[2025-06-05 07:04:42] -rw-r--r-- 2 boinc boinc 214851549 Jun  5 04:20 ATLAS.root_0
[2025-06-05 07:04:42] -rw-r--r-- 2 boinc boinc     15093 Jun  5 04:20 start_atlas.sh
[2025-06-05 07:04:42] -rw-r--r-- 2 boinc boinc    508877 Jun  5 04:20 input.tar.gz
[2025-06-05 07:04:42] -rw------- 1 boinc boinc 173833270 Jun  5 07:03 HITS.pool.root.1
[2025-06-05 07:04:42] -rw------- 1 boinc boinc   1239040 Jun  5 07:04 result.tar.gz
07:04:44 (1578934): run_atlas exited; CPU time 37774.595793
07:04:44 (1578934): called boinc_finish(0)

</stderr_txt>
]]>

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