Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:52:44 (27037): wrapper (7.7.26015): starting
00:52:44 (27037): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 00:52:44] Arguments: --nthreads 8
[2025-06-04 00:52:44] Threads: 8
[2025-06-04 00:52:44] Checking for CVMFS
[2025-06-04 00:52:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 00:52:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 00:52:45] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 00:52:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 00:52:46] 2.11.2.0 21130 32381 90760 146760 1 16 16258338 25165825 4285 130560 0 16364488 99.777 19464739 2111 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 00:52:46] CVMFS is ok
[2025-06-04 00:52:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 00:52:46] Checking for apptainer binary...
[2025-06-04 00:52:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 00:52:46] Running /usr/bin/apptainer --version
[2025-06-04 00:52:46] apptainer version 1.3.2-1.el7
[2025-06-04 00:52:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:12:47] cg-vwn411.simple-grid.lan
[2025-06-04 01:12:47] apptainer works
[2025-06-04 01:12:47] Set ATHENA_PROC_NUMBER=8
[2025-06-04 01:12:47] Set ATHENA_CORE_NUMBER=8
[2025-06-04 01:12:47] Starting ATLAS job with PandaID=6677577998
[2025-06-04 01:12:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:28:50]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:28:50] 2025-06-04 03:12:42,157 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 05:28:50] 2025-06-04 03:12:42,158 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 05:28:50] 2025-06-04 03:12:42,158 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 05:28:50] 2025-06-04 03:12:42,158 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 05:28:50] 2025-06-04 03:12:42,163 | INFO     | fitting pss+swap vs Time
[2025-06-04 05:28:50] 2025-06-04 03:12:42,164 | INFO     | sum of square deviations: 3579276412.5
[2025-06-04 05:28:50] 2025-06-04 03:12:42,166 | INFO     | sum of deviations: -54589157847.00001
[2025-06-04 05:28:50] 2025-06-04 03:12:42,166 | INFO     | mean x: 1748999754.5
[2025-06-04 05:28:50] 2025-06-04 03:12:42,166 | INFO     | mean y: 2527247.2831858406
[2025-06-04 05:28:50] 2025-06-04 03:12:42,166 | INFO     | -- intersect: 26677310826.257404
[2025-06-04 05:28:50] 2025-06-04 03:12:42,166 | INFO     | intersect: 26677310826.257404
[2025-06-04 05:28:50] 2025-06-04 03:12:42,167 | INFO     | chi2: 2.5523626895340623
[2025-06-04 05:28:50] 2025-06-04 03:12:42,167 | INFO     | sum of square deviations: 3346927870.0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,169 | INFO     | sum of deviations: -38037813248.99999
[2025-06-04 05:28:50] 2025-06-04 03:12:42,169 | INFO     | mean x: 1748999602.0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,170 | INFO     | mean y: 2537935.226244344
[2025-06-04 05:28:50] 2025-06-04 03:12:42,170 | INFO     | -- intersect: 19879906918.816357
[2025-06-04 05:28:50] 2025-06-04 03:12:42,170 | INFO     | intersect: 19879906918.816357
[2025-06-04 05:28:50] 2025-06-04 03:12:42,170 | INFO     | chi2: 1.7812471511687982
[2025-06-04 05:28:50] 2025-06-04 03:12:42,170 | INFO     | current chi2=1.7812471511687982 (change=30.21183241422607 %)
[2025-06-04 05:28:50] 2025-06-04 03:12:42,171 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,172 | INFO     | sum of deviations: -36661016622.5
[2025-06-04 05:28:50] 2025-06-04 03:12:42,173 | INFO     | mean x: 1748999449.5
[2025-06-04 05:28:50] 2025-06-04 03:12:42,173 | INFO     | mean y: 2538880.8935185187
[2025-06-04 05:28:50] 2025-06-04 03:12:42,173 | INFO     | -- intersect: 20521898731.62611
[2025-06-04 05:28:50] 2025-06-04 03:12:42,173 | INFO     | intersect: 20521898731.62611
[2025-06-04 05:28:50] 2025-06-04 03:12:42,173 | INFO     | chi2: 1.7782328470579978
[2025-06-04 05:28:50] 2025-06-04 03:12:42,173 | INFO     | current chi2=1.7782328470579978 (change=0.16922436107883743 %)
[2025-06-04 05:28:50] 2025-06-04 03:12:42,174 | INFO     | right removable region: 215
[2025-06-04 05:28:50] 2025-06-04 03:12:42,174 | INFO     | sum of square deviations: 3346927870.0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,176 | INFO     | sum of deviations: -90910832110.0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,176 | INFO     | mean x: 1748999907.0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,176 | INFO     | mean y: 2550865.411764706
[2025-06-04 05:28:50] 2025-06-04 03:12:42,176 | INFO     | -- intersect: 47509710589.67634
[2025-06-04 05:28:50] 2025-06-04 03:12:42,176 | INFO     | intersect: 47509710589.67634
[2025-06-04 05:28:50] 2025-06-04 03:12:42,177 | INFO     | chi2: 1.0118359439110365
[2025-06-04 05:28:50] 2025-06-04 03:12:42,177 | INFO     | current chi2=1.0118359439110365 (change=60.3568901841396 %)
[2025-06-04 05:28:50] 2025-06-04 03:12:42,177 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,179 | INFO     | sum of deviations: -85977143478.50002
[2025-06-04 05:28:50] 2025-06-04 03:12:42,179 | INFO     | mean x: 1749000059.5
[2025-06-04 05:28:50] 2025-06-04 03:12:42,179 | INFO     | mean y: 2547469.1157407407
[2025-06-04 05:28:50] 2025-06-04 03:12:42,179 | INFO     | -- intersect: 48124414340.3896
[2025-06-04 05:28:50] 2025-06-04 03:12:42,180 | INFO     | intersect: 48124414340.3896
[2025-06-04 05:28:50] 2025-06-04 03:12:42,180 | INFO     | chi2: 1.0115326134619198
[2025-06-04 05:28:50] 2025-06-04 03:12:42,180 | INFO     | current chi2=1.0115326134619198 (change=0.02997822432994617 %)
[2025-06-04 05:28:50] 2025-06-04 03:12:42,180 | INFO     | left removable region: 20
[2025-06-04 05:28:50] 2025-06-04 03:12:42,181 | INFO     | sum of square deviations: 2299168690.0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,182 | INFO     | sum of deviations: -55562130905.00001
[2025-06-04 05:28:50] 2025-06-04 03:12:42,182 | INFO     | mean x: 1749000029.0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,182 | INFO     | mean y: 2551500.871794872
[2025-06-04 05:28:50] 2025-06-04 03:12:42,182 | INFO     | -- intersect: 42269205960.291565
[2025-06-04 05:28:50] 2025-06-04 03:12:42,183 | INFO     | intersect: 42269205960.291565
[2025-06-04 05:28:50] 2025-06-04 03:12:42,183 | INFO     | chi2: 0.20435260059891283
[2025-06-04 05:28:50] 2025-06-04 03:12:42,183 | INFO     | -- intersect: 42269205960.291565
[2025-06-04 05:28:50] 2025-06-04 03:12:42,183 | INFO     | current memory leak: -24.17 B/s (using 195 data points, chi2=0.20)
[2025-06-04 05:28:50] 2025-06-04 03:12:42,184 | INFO     | ..............................
[2025-06-04 05:28:50] 2025-06-04 03:12:42,184 | INFO     | . Timing measurements:
[2025-06-04 05:28:50] 2025-06-04 03:12:42,184 | INFO     | . get job = 0 s
[2025-06-04 05:28:50] 2025-06-04 03:12:42,185 | INFO     | . initial setup = 8 s
[2025-06-04 05:28:50] 2025-06-04 03:12:42,185 | INFO     | . payload setup = 138 s
[2025-06-04 05:28:50] 2025-06-04 03:12:42,185 | INFO     | . stage-in = 0 s
[2025-06-04 05:28:50] 2025-06-04 03:12:42,185 | INFO     | . payload execution = 13806 s
[2025-06-04 05:28:50] 2025-06-04 03:12:42,185 | INFO     | . stage-out = 3 s
[2025-06-04 05:28:50] 2025-06-04 03:12:42,185 | INFO     | . log creation = 0 s
[2025-06-04 05:28:50] 2025-06-04 03:12:42,185 | INFO     | ..............................
[2025-06-04 05:28:50] 2025-06-04 03:12:42,311 | INFO     | 
[2025-06-04 05:28:50] 2025-06-04 03:12:42,311 | INFO     | job summary report
[2025-06-04 05:28:50] 2025-06-04 03:12:42,311 | INFO     | --------------------------------------------------
[2025-06-04 05:28:50] 2025-06-04 03:12:42,311 | INFO     | PanDA job id: 6677577998
[2025-06-04 05:28:50] 2025-06-04 03:12:42,311 | INFO     | task id: 45006595
[2025-06-04 05:28:50] 2025-06-04 03:12:42,311 | INFO     | errors: (none)
[2025-06-04 05:28:50] 2025-06-04 03:12:42,311 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | pilot state: finished 
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | transexitcode: 0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | exeerrorcode: 0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | exeerrordiag: 
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | exitcode: 0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | exitmsg: OK
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | cpuconsumptiontime: 50073 s
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | nevents: 400
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | neventsw: 0
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | pid: 17161
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | pgrp: 17161
[2025-06-04 05:28:50] 2025-06-04 03:12:42,312 | INFO     | corecount: 8
[2025-06-04 05:28:50] 2025-06-04 03:12:42,313 | INFO     | event service: False
[2025-06-04 05:28:50] 2025-06-04 03:12:42,313 | INFO     | sizes: {0: 2405011, 1: 2405210, 12: 2405210, 23: 2405238, 33: 2405266, 44: 2405322, 55: 2405478, 66: 2405506, 76: 2405534, 84: 2405796, 87: 2405824, 13949: 2435922
[2025-06-04 05:28:50] 2025-06-04 03:12:42,313 | INFO     | --------------------------------------------------
[2025-06-04 05:28:50] 2025-06-04 03:12:42,313 | INFO     | 
[2025-06-04 05:28:50] 2025-06-04 03:12:42,313 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-04 05:28:50] 2025-06-04 03:12:42,341 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,342 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,342 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,342 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,342 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,342 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,342 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,343 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,343 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,343 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,343 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,343 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,343 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,343 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,343 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,343 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,343 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,343 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:28:50] 2025-06-04 03:12:42,344 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,344 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:28:50] 2025-06-04 03:12:42,344 | INFO     | job 6677577998 has completed (purged errors)
[2025-06-04 05:28:50] 2025-06-04 03:12:42,344 | INFO     | overall cleanup function is called
[2025-06-04 05:28:50] 2025-06-04 03:12:43,353 | INFO     | --- collectZombieJob: --- 10, [17161]
[2025-06-04 05:28:50] 2025-06-04 03:12:43,354 | INFO     | zombie collector waiting for pid 17161
[2025-06-04 05:28:50] 2025-06-04 03:12:43,354 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:28:50] 2025-06-04 03:12:43,354 | INFO     | collected zombie processes
[2025-06-04 05:28:50] 2025-06-04 03:12:43,354 | INFO     | will attempt to kill all subprocesses of pid=17161
[2025-06-04 05:28:50] 2025-06-04 03:12:43,464 | INFO     | process IDs to be killed: [17161] (in reverse order)
[2025-06-04 05:28:50] 2025-06-04 03:12:44,053 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:28:50] 2025-06-04 03:12:44,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:28:50] 2025-06-04 03:12:44,057 | INFO     | did not find any defunct processes belonging to 17161
[2025-06-04 05:28:50] 2025-06-04 03:12:44,061 | INFO     | did not find any defunct processes belonging to 17161
[2025-06-04 05:28:50] 2025-06-04 03:12:44,061 | INFO     | ready for new job
[2025-06-04 05:28:50] 2025-06-04 03:12:44,061 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:28:50] 2025-06-04 03:12:44,063 | INFO     | **************************************
[2025-06-04 05:28:50] 2025-06-04 03:12:44,063 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:28:50] 2025-06-04 03:12:44,063 | INFO     | **************************************
[2025-06-04 05:28:50] 2025-06-04 03:12:44,064 | INFO     | 
[2025-06-04 05:28:50] 2025-06-04 03:12:44,064 | INFO     | pilot is running in a VM
[2025-06-04 05:28:50] 2025-06-04 03:12:44,064 | INFO     | architecture information:
[2025-06-04 05:28:50] 2025-06-04 03:12:44,080 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:28:50] 2025-06-04 03:12:44,341 | INFO     | cat /etc/os-release:
[2025-06-04 05:28:50] NAME="CentOS Linux"
[2025-06-04 05:28:50] VERSION="7 (Core)"
[2025-06-04 05:28:50] ID="centos"
[2025-06-04 05:28:50] ID_LIKE="rhel fedora"
[2025-06-04 05:28:50] VERSION_ID="7"
[2025-06-04 05:28:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:28:50] ANSI_COLOR="0;31"
[2025-06-04 05:28:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:28:50] HOME_URL="https://www.centos.org/"
[2025-06-04 05:28:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:28:50] 
[2025-06-04 05:28:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:28:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:28:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:28:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:28:50] 
[2025-06-04 05:28:50] 2025-06-04 03:12:44,341 | INFO     | **************************************
[2025-06-04 05:28:50] 2025-06-04 03:12:44,844 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-04 05:28:50] 2025-06-04 03:12:45,076 | INFO     | sufficient remaining disk space (496727228416 B)
[2025-06-04 05:28:50] 2025-06-04 03:12:45,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:28:50] 2025-06-04 03:12:45,077 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:28:50] 2025-06-04 03:12:45,077 | INFO     | update_server=False
[2025-06-04 05:28:50] 2025-06-04 03:12:45,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:28:50] 2025-06-04 03:12:45,080 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 05:28:50] 2025-06-04 03:12:45,081 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:28:50] 2025-06-04 03:12:45,081 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:28:50] 2025-06-04 03:12:45,081 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:28:50] 2025-06-04 03:12:45,254 | INFO     | all data control threads have been joined
[2025-06-04 05:28:50] 2025-06-04 03:12:45,795 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:28:50] 2025-06-04 03:12:45,796 | INFO     | aborting loop
[2025-06-04 05:28:50] 2025-06-04 03:12:45,845 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:28:50] 2025-06-04 03:12:46,083 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:46,156 | INFO     | all job control threads have been joined
[2025-06-04 05:28:50] 2025-06-04 03:12:46,167 | INFO     | all payload control threads have been joined
[2025-06-04 05:28:50] 2025-06-04 03:12:46,260 | INFO     | [data] control thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:46,345 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:46,504 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:28:50] 2025-06-04 03:12:46,750 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:46,802 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:46,819 | INFO     | [job] validate thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:47,061 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:47,162 | INFO     | [job] control thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:47,172 | INFO     | [payload] control thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:47,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:28:50] 2025-06-04 03:12:47,385 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:47,454 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:47,535 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:47,852 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:48,330 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:50,513 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:55,886 | INFO     | job.realtimelogging is not enabled
[2025-06-04 05:28:50] 2025-06-04 03:12:56,892 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:28:50] 2025-06-04 03:12:58,843 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701725759296)>', '<ExcThread(monitor, started 140701274711808)>']
[2025-06-04 05:28:50] 2025-06-04 03:12:59,164 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:28:50] 2025-06-04 03:12:59,165 | INFO     | [monitor] control thread has ended
[2025-06-04 05:28:50] 2025-06-04 03:13:03,869 | INFO     | all workflow threads have been joined
[2025-06-04 05:28:50] 2025-06-04 03:13:03,870 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:28:50] 2025-06-04 03:13:03,870 | INFO     | traces error code: 0
[2025-06-04 05:28:50] 2025-06-04 03:13:03,870 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:28:50] 2025-06-04 03:13:04,098 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:28:50] 2025-06-04 03:13:04,108 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:28:50] 2025-06-04 03:13:04,116 [wrapper] pilotpid: 10538
[2025-06-04 05:28:50] 2025-06-04 03:13:04,128 [wrapper] Pilot exit status: 0
[2025-06-04 05:28:50] 2025-06-04 03:13:04,158 [wrapper] pandaids: 6677577998
[2025-06-04 05:28:50] 2025-06-04 03:13:04,205 [wrapper] cleanup supervisor_pilot 19909 10539
[2025-06-04 05:28:50] 2025-06-04 03:13:04,244 [wrapper] Test setup, not cleaning
[2025-06-04 05:28:50] 2025-06-04 03:13:04,300 [wrapper] apfmon messages muted
[2025-06-04 05:28:50] 2025-06-04 03:13:04,396 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:28:50] 2025-06-04 03:13:04,496 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:28:50]  *** Error codes and diagnostics ***
[2025-06-04 05:28:50]     "exeErrorCode": 0,
[2025-06-04 05:28:50]     "exeErrorDiag": "",
[2025-06-04 05:28:50]     "pilotErrorCode": 0,
[2025-06-04 05:28:50]     "pilotErrorDiag": "",
[2025-06-04 05:28:50]  *** Listing of results directory ***
[2025-06-04 05:28:50] total 393792
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc    495897 Jun  3 12:43 pilot3.tar.gz
[2025-06-04 05:28:50] -rwx------. 1 boinc boinc     37140 Jun  3 12:45 runpilot2-wrapper.sh
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc      5111 Jun  3 12:45 queuedata.json
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc       100 Jun  4 00:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:28:50] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 00:52 run_atlas
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc       105 Jun  4 00:52 job.xml
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc      6392 Jun  4 00:52 init_data.xml
[2025-06-04 05:28:50] -rw-r--r--. 2 boinc boinc 217487967 Jun  4 00:52 EVNT.45006593._001175.pool.root.1
[2025-06-04 05:28:50] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:52 start_atlas.sh
[2025-06-04 05:28:50] drwxrwx--x. 2 boinc boinc        68 Jun  4 00:52 shared
[2025-06-04 05:28:50] -rw-r--r--. 2 boinc boinc    508875 Jun  4 00:52 input.tar.gz
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc         0 Jun  4 00:52 boinc_lockfile
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc      2524 Jun  4 01:12 pandaJob.out
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc    986861 Jun  4 01:15 agis_schedconf.cvmfs.json
[2025-06-04 05:28:50] drwx------. 4 boinc boinc      4096 Jun  4 01:15 pilot3
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc 178750880 Jun  4 05:09 HITS.45006595._029376.pool.root.1
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc       531 Jun  4 05:09 boinc_task_state.xml
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc      1016 Jun  4 05:11 memory_monitor_summary.json
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc   1603667 Jun  4 05:11 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc    371348 Jun  4 05:11 log.45006595._029376.job.log.tgz.1
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc        95 Jun  4 05:12 pilot_heartbeat.json
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc      7692 Jun  4 05:12 heartbeat.json
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc      4611 Jun  4 05:13 pilotlog.txt
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc   1221941 Jun  4 05:13 log.45006595._029376.job.log.1
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc       357 Jun  4 05:13 output.list
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc       620 Jun  4 05:13 runtime_log
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc   1607680 Jun  4 05:13 result.tar.gz
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc       657 Jun  4 05:13 wXcNDmbKeg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJYjKDmsjfkRo.diag
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc      8659 Jun  4 05:13 runtime_log.err
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc      8192 Jun  4 05:28 boinc_mmap_file
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc        28 Jun  4 05:28 wrapper_checkpoint.txt
[2025-06-04 05:28:50] -rw-r--r--. 1 boinc boinc     20509 Jun  4 05:28 stderr.txt
[2025-06-04 05:28:50] HITS file was successfully produced:
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc 178750880 Jun  4 05:09 shared/HITS.pool.root.1
[2025-06-04 05:28:50]  *** Contents of shared directory: ***
[2025-06-04 05:28:50] total 389044
[2025-06-04 05:28:50] -rw-r--r--. 2 boinc boinc 217487967 Jun  4 00:52 ATLAS.root_0
[2025-06-04 05:28:50] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:52 start_atlas.sh
[2025-06-04 05:28:50] -rw-r--r--. 2 boinc boinc    508875 Jun  4 00:52 input.tar.gz
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc 178750880 Jun  4 05:09 HITS.pool.root.1
[2025-06-04 05:28:50] -rw-------. 1 boinc boinc   1607680 Jun  4 05:13 result.tar.gz
05:28:52 (27037): run_atlas exited; CPU time 50266.044336
05:28:52 (27037): called boinc_finish(0)

</stderr_txt>
]]>

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