Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:59:26 (32357): wrapper (7.7.26015): starting
00:59:26 (32357): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 00:59:26] Arguments: --nthreads 8
[2025-06-04 00:59:26] Threads: 8
[2025-06-04 00:59:26] Checking for CVMFS
[2025-06-04 00:59:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 00:59:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 00:59:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 00:59:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 00:59:30] 2.11.2.0 26884 32415 89428 146760 2 69 18304851 25165825 4275 130560 0 16840700 99.816 19494510 2084 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 00:59:30] CVMFS is ok
[2025-06-04 00:59:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 00:59:30] Checking for apptainer binary...
[2025-06-04 00:59:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 00:59:30] Running /usr/bin/apptainer --version
[2025-06-04 00:59:30] apptainer version 1.3.2-1.el7
[2025-06-04 00:59:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:10:35] cg-vwn403.simple-grid.lan
[2025-06-04 01:10:35] apptainer works
[2025-06-04 01:10:36] Set ATHENA_PROC_NUMBER=8
[2025-06-04 01:10:36] Set ATHENA_CORE_NUMBER=8
[2025-06-04 01:10:36] Starting ATLAS job with PandaID=6677616826
[2025-06-04 01:10:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 06:25:21]  *** The last 200 lines of the pilot log: ***
[2025-06-04 06:25:21] 2025-06-04 03:12:54,380 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 06:25:21] 2025-06-04 03:12:54,380 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 06:25:21] 2025-06-04 03:12:54,380 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 06:25:21] 2025-06-04 03:12:54,380 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 06:25:21] 2025-06-04 03:12:54,385 | INFO     | fitting pss+swap vs Time
[2025-06-04 06:25:21] 2025-06-04 03:12:54,386 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,387 | INFO     | sum of deviations: 25656092968.000008
[2025-06-04 06:25:21] 2025-06-04 03:12:54,388 | INFO     | mean x: 1748999773.0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,388 | INFO     | mean y: 2483748.4713656385
[2025-06-04 06:25:21] 2025-06-04 03:12:54,388 | INFO     | -- intersect: -12369311003.29677
[2025-06-04 06:25:21] 2025-06-04 03:12:54,388 | INFO     | intersect: -12369311003.29677
[2025-06-04 06:25:21] 2025-06-04 03:12:54,388 | INFO     | chi2: 6.617715582330682
[2025-06-04 06:25:21] 2025-06-04 03:12:54,395 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 06:25:21] 2025-06-04 03:12:54,397 | INFO     | sum of deviations: 40571534563.999985
[2025-06-04 06:25:21] 2025-06-04 03:12:54,397 | INFO     | mean x: 1748999620.5
[2025-06-04 06:25:21] 2025-06-04 03:12:54,397 | INFO     | mean y: 2493277.036036036
[2025-06-04 06:25:21] 2025-06-04 03:12:54,398 | INFO     | -- intersect: -20913698478.855022
[2025-06-04 06:25:21] 2025-06-04 03:12:54,398 | INFO     | intersect: -20913698478.855022
[2025-06-04 06:25:21] 2025-06-04 03:12:54,398 | INFO     | chi2: 5.908123055751026
[2025-06-04 06:25:21] 2025-06-04 03:12:54,398 | INFO     | current chi2=5.908123055751026 (change=10.722620483634413 %)
[2025-06-04 06:25:21] 2025-06-04 03:12:54,398 | INFO     | right removable region: 221
[2025-06-04 06:25:21] 2025-06-04 03:12:54,399 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 06:25:21] 2025-06-04 03:12:54,400 | INFO     | sum of deviations: -53263317479.0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,401 | INFO     | mean x: 1748999925.5
[2025-06-04 06:25:21] 2025-06-04 03:12:54,401 | INFO     | mean y: 2535036.135135135
[2025-06-04 06:25:21] 2025-06-04 03:12:54,401 | INFO     | -- intersect: 27461835459.31922
[2025-06-04 06:25:21] 2025-06-04 03:12:54,401 | INFO     | intersect: 27461835459.31922
[2025-06-04 06:25:21] 2025-06-04 03:12:54,401 | INFO     | chi2: 1.896118358952946
[2025-06-04 06:25:21] 2025-06-04 03:12:54,401 | INFO     | current chi2=1.896118358952946 (change=71.34784148149873 %)
[2025-06-04 06:25:21] 2025-06-04 03:12:54,402 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,403 | INFO     | sum of deviations: -81257402221.0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,404 | INFO     | mean x: 1749000078.0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,404 | INFO     | mean y: 2553929.2304147463
[2025-06-04 06:25:21] 2025-06-04 03:12:54,404 | INFO     | -- intersect: 44856882513.879654
[2025-06-04 06:25:21] 2025-06-04 03:12:54,404 | INFO     | intersect: 44856882513.879654
[2025-06-04 06:25:21] 2025-06-04 03:12:54,404 | INFO     | chi2: 1.0176193965223423
[2025-06-04 06:25:21] 2025-06-04 03:12:54,404 | INFO     | current chi2=1.0176193965223423 (change=46.33144119313938 %)
[2025-06-04 06:25:21] 2025-06-04 03:12:54,405 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,406 | INFO     | sum of deviations: -80330353775.49998
[2025-06-04 06:25:21] 2025-06-04 03:12:54,407 | INFO     | mean x: 1749000230.5
[2025-06-04 06:25:21] 2025-06-04 03:12:54,407 | INFO     | mean y: 2553231.080188679
[2025-06-04 06:25:21] 2025-06-04 03:12:54,407 | INFO     | -- intersect: 47557226559.08111
[2025-06-04 06:25:21] 2025-06-04 03:12:54,407 | INFO     | intersect: 47557226559.08111
[2025-06-04 06:25:21] 2025-06-04 03:12:54,407 | INFO     | chi2: 0.9955354725611449
[2025-06-04 06:25:21] 2025-06-04 03:12:54,407 | INFO     | current chi2=0.9955354725611449 (change=2.1701555647099484 %)
[2025-06-04 06:25:21] 2025-06-04 03:12:54,408 | INFO     | left removable region: 30
[2025-06-04 06:25:21] 2025-06-04 03:12:54,408 | INFO     | sum of square deviations: 2160561440.0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,409 | INFO     | sum of deviations: -46905138333.999985
[2025-06-04 06:25:21] 2025-06-04 03:12:54,409 | INFO     | mean x: 1749000505.0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,410 | INFO     | mean y: 2551366.057591623
[2025-06-04 06:25:21] 2025-06-04 03:12:54,410 | INFO     | -- intersect: 37972825719.03356
[2025-06-04 06:25:21] 2025-06-04 03:12:54,410 | INFO     | intersect: 37972825719.03356
[2025-06-04 06:25:21] 2025-06-04 03:12:54,410 | INFO     | chi2: 0.19595646022951071
[2025-06-04 06:25:21] 2025-06-04 03:12:54,410 | INFO     | -- intersect: 37972825719.03356
[2025-06-04 06:25:21] 2025-06-04 03:12:54,410 | INFO     | current memory leak: -21.71 B/s (using 191 data points, chi2=0.20)
[2025-06-04 06:25:21] 2025-06-04 03:12:54,411 | INFO     | ..............................
[2025-06-04 06:25:21] 2025-06-04 03:12:54,411 | INFO     | . Timing measurements:
[2025-06-04 06:25:21] 2025-06-04 03:12:54,411 | INFO     | . get job = 0 s
[2025-06-04 06:25:21] 2025-06-04 03:12:54,412 | INFO     | . initial setup = 6 s
[2025-06-04 06:25:21] 2025-06-04 03:12:54,412 | INFO     | . payload setup = 150 s
[2025-06-04 06:25:21] 2025-06-04 03:12:54,412 | INFO     | . stage-in = 0 s
[2025-06-04 06:25:21] 2025-06-04 03:12:54,412 | INFO     | . payload execution = 13936 s
[2025-06-04 06:25:21] 2025-06-04 03:12:54,412 | INFO     | . stage-out = 2 s
[2025-06-04 06:25:21] 2025-06-04 03:12:54,412 | INFO     | . log creation = 0 s
[2025-06-04 06:25:21] 2025-06-04 03:12:54,412 | INFO     | ..............................
[2025-06-04 06:25:21] 2025-06-04 03:12:54,537 | INFO     | 
[2025-06-04 06:25:21] 2025-06-04 03:12:54,537 | INFO     | job summary report
[2025-06-04 06:25:21] 2025-06-04 03:12:54,537 | INFO     | --------------------------------------------------
[2025-06-04 06:25:21] 2025-06-04 03:12:54,538 | INFO     | PanDA job id: 6677616826
[2025-06-04 06:25:21] 2025-06-04 03:12:54,538 | INFO     | task id: 45006595
[2025-06-04 06:25:21] 2025-06-04 03:12:54,538 | INFO     | errors: (none)
[2025-06-04 06:25:21] 2025-06-04 03:12:54,538 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 06:25:21] 2025-06-04 03:12:54,538 | INFO     | pilot state: finished 
[2025-06-04 06:25:21] 2025-06-04 03:12:54,538 | INFO     | transexitcode: 0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,538 | INFO     | exeerrorcode: 0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,538 | INFO     | exeerrordiag: 
[2025-06-04 06:25:21] 2025-06-04 03:12:54,538 | INFO     | exitcode: 0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,538 | INFO     | exitmsg: OK
[2025-06-04 06:25:21] 2025-06-04 03:12:54,539 | INFO     | cpuconsumptiontime: 50826 s
[2025-06-04 06:25:21] 2025-06-04 03:12:54,539 | INFO     | nevents: 400
[2025-06-04 06:25:21] 2025-06-04 03:12:54,539 | INFO     | neventsw: 0
[2025-06-04 06:25:21] 2025-06-04 03:12:54,539 | INFO     | pid: 18796
[2025-06-04 06:25:21] 2025-06-04 03:12:54,539 | INFO     | pgrp: 18796
[2025-06-04 06:25:21] 2025-06-04 03:12:54,539 | INFO     | corecount: 8
[2025-06-04 06:25:21] 2025-06-04 03:12:54,539 | INFO     | event service: False
[2025-06-04 06:25:21] 2025-06-04 03:12:54,539 | INFO     | sizes: {0: 2404957, 1: 2405212, 12: 2405212, 23: 2405240, 34: 2405268, 44: 2405296, 55: 2405452, 66: 2405480, 77: 2405508, 87: 2405564, 90: 2405798, 98: 2406106, 1
[2025-06-04 06:25:21] 2025-06-04 03:12:54,539 | INFO     | --------------------------------------------------
[2025-06-04 06:25:21] 2025-06-04 03:12:54,539 | INFO     | 
[2025-06-04 06:25:21] 2025-06-04 03:12:54,540 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-04 06:25:21] 2025-06-04 03:12:55,073 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,073 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,073 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,073 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,074 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,074 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,074 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,074 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,074 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,075 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 06:25:21] 2025-06-04 03:12:55,075 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,075 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 06:25:21] 2025-06-04 03:12:55,075 | INFO     | job 6677616826 has completed (purged errors)
[2025-06-04 06:25:21] 2025-06-04 03:12:55,075 | INFO     | overall cleanup function is called
[2025-06-04 06:25:21] 2025-06-04 03:12:56,086 | INFO     | --- collectZombieJob: --- 10, [18796]
[2025-06-04 06:25:21] 2025-06-04 03:12:56,086 | INFO     | zombie collector waiting for pid 18796
[2025-06-04 06:25:21] 2025-06-04 03:12:56,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 06:25:21] 2025-06-04 03:12:56,086 | INFO     | collected zombie processes
[2025-06-04 06:25:21] 2025-06-04 03:12:56,086 | INFO     | will attempt to kill all subprocesses of pid=18796
[2025-06-04 06:25:21] 2025-06-04 03:12:56,229 | INFO     | process IDs to be killed: [18796] (in reverse order)
[2025-06-04 06:25:21] 2025-06-04 03:12:56,914 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 06:25:21] 2025-06-04 03:12:56,915 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 06:25:21] 2025-06-04 03:12:56,919 | INFO     | did not find any defunct processes belonging to 18796
[2025-06-04 06:25:21] 2025-06-04 03:12:56,922 | INFO     | did not find any defunct processes belonging to 18796
[2025-06-04 06:25:21] 2025-06-04 03:12:56,922 | INFO     | ready for new job
[2025-06-04 06:25:21] 2025-06-04 03:12:56,922 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 06:25:21] 2025-06-04 03:12:56,924 | INFO     | **************************************
[2025-06-04 06:25:21] 2025-06-04 03:12:56,924 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 06:25:21] 2025-06-04 03:12:56,924 | INFO     | **************************************
[2025-06-04 06:25:21] 2025-06-04 03:12:56,925 | INFO     | 
[2025-06-04 06:25:21] 2025-06-04 03:12:56,925 | INFO     | pilot is running in a VM
[2025-06-04 06:25:21] 2025-06-04 03:12:56,925 | INFO     | architecture information:
[2025-06-04 06:25:21] 2025-06-04 03:12:56,940 | INFO     | executing command: cat /etc/os-release
[2025-06-04 06:25:21] 2025-06-04 03:12:57,246 | INFO     | cat /etc/os-release:
[2025-06-04 06:25:21] NAME="CentOS Linux"
[2025-06-04 06:25:21] VERSION="7 (Core)"
[2025-06-04 06:25:21] ID="centos"
[2025-06-04 06:25:21] ID_LIKE="rhel fedora"
[2025-06-04 06:25:21] VERSION_ID="7"
[2025-06-04 06:25:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 06:25:21] ANSI_COLOR="0;31"
[2025-06-04 06:25:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 06:25:21] HOME_URL="https://www.centos.org/"
[2025-06-04 06:25:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 06:25:21] 
[2025-06-04 06:25:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 06:25:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 06:25:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 06:25:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 06:25:21] 
[2025-06-04 06:25:21] 2025-06-04 03:12:57,247 | INFO     | **************************************
[2025-06-04 06:25:21] 2025-06-04 03:12:57,751 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-04 06:25:21] 2025-06-04 03:12:57,913 | INFO     | sufficient remaining disk space (496922263552 B)
[2025-06-04 06:25:21] 2025-06-04 03:12:57,914 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 06:25:21] 2025-06-04 03:12:57,914 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 06:25:21] 2025-06-04 03:12:57,914 | INFO     | update_server=False
[2025-06-04 06:25:21] 2025-06-04 03:12:57,914 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 06:25:21] 2025-06-04 03:12:57,915 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 06:25:21] 2025-06-04 03:12:57,915 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 06:25:21] 2025-06-04 03:12:57,915 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 06:25:21] 2025-06-04 03:12:57,915 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 06:25:21] 2025-06-04 03:12:57,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:25:21] 2025-06-04 03:12:57,924 | INFO     | aborting loop
[2025-06-04 06:25:21] 2025-06-04 03:12:58,196 | INFO     | all payload control threads have been joined
[2025-06-04 06:25:21] 2025-06-04 03:12:58,886 | INFO     | all data control threads have been joined
[2025-06-04 06:25:21] 2025-06-04 03:12:58,920 | INFO     | [job] retrieve thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:12:58,930 | INFO     | [job] job monitor thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:12:58,986 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:12:59,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 06:25:21] 2025-06-04 03:12:59,202 | INFO     | [payload] control thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:12:59,345 | INFO     | [payload] failed_post thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:12:59,389 | INFO     | [job] validate thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:12:59,446 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:12:59,517 | INFO     | all job control threads have been joined
[2025-06-04 06:25:21] 2025-06-04 03:12:59,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:25:21] 2025-06-04 03:12:59,624 | INFO     | [payload] validate_post thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:12:59,875 | INFO     | [data] copytool_in thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:12:59,892 | INFO     | [data] control thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:13:00,227 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:13:00,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 06:25:21] 2025-06-04 03:13:00,523 | INFO     | [job] control thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:13:00,558 | INFO     | [job] queue monitor thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:13:01,165 | INFO     | [data] copytool_out thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:13:04,287 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:13:08,027 | INFO     | job.realtimelogging is not enabled
[2025-06-04 06:25:21] 2025-06-04 03:13:09,033 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 06:25:21] 2025-06-04 03:13:09,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140590069446464)>', '<ExcThread(monitor, started 140589462951680)>']
[2025-06-04 06:25:21] 2025-06-04 03:13:09,985 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 06:25:21] 2025-06-04 03:13:09,985 | INFO     | [monitor] control thread has ended
[2025-06-04 06:25:21] 2025-06-04 03:13:14,489 | INFO     | all workflow threads have been joined
[2025-06-04 06:25:21] 2025-06-04 03:13:14,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 06:25:21] 2025-06-04 03:13:14,489 | INFO     | traces error code: 0
[2025-06-04 06:25:21] 2025-06-04 03:13:14,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 06:25:21] 2025-06-04 03:13:14,841 [wrapper] ==== pilot stdout END ====
[2025-06-04 06:25:21] 2025-06-04 03:13:14,897 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 06:25:21] 2025-06-04 03:13:14,997 [wrapper] pilotpid: 8187
[2025-06-04 06:25:21] 2025-06-04 03:13:15,049 [wrapper] Pilot exit status: 0
[2025-06-04 06:25:21] 2025-06-04 03:13:15,185 [wrapper] pandaids: 6677616826
[2025-06-04 06:25:21] 2025-06-04 03:13:15,226 [wrapper] cleanup supervisor_pilot  3247 8188
[2025-06-04 06:25:21] 2025-06-04 03:13:15,260 [wrapper] Test setup, not cleaning
[2025-06-04 06:25:21] 2025-06-04 03:13:15,277 [wrapper] apfmon messages muted
[2025-06-04 06:25:21] 2025-06-04 03:13:15,280 [wrapper] ==== wrapper stdout END ====
[2025-06-04 06:25:21] 2025-06-04 03:13:15,283 [wrapper] ==== wrapper stderr END ====
[2025-06-04 06:25:21]  *** Error codes and diagnostics ***
[2025-06-04 06:25:21]     "exeErrorCode": 0,
[2025-06-04 06:25:21]     "exeErrorDiag": "",
[2025-06-04 06:25:21]     "pilotErrorCode": 0,
[2025-06-04 06:25:21]     "pilotErrorDiag": "",
[2025-06-04 06:25:21]  *** Listing of results directory ***
[2025-06-04 06:25:21] total 393780
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc    495897 Jun  3 13:50 pilot3.tar.gz
[2025-06-04 06:25:21] -rwx------. 1 boinc boinc     37140 Jun  3 14:04 runpilot2-wrapper.sh
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc      5111 Jun  3 14:04 queuedata.json
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc       100 Jun  4 00:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 06:25:21] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 00:59 run_atlas
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc       105 Jun  4 00:59 job.xml
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc      6392 Jun  4 00:59 init_data.xml
[2025-06-04 06:25:21] -rw-r--r--. 2 boinc boinc 216273334 Jun  4 00:59 EVNT.45006593._001274.pool.root.1
[2025-06-04 06:25:21] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:59 start_atlas.sh
[2025-06-04 06:25:21] drwxrwx--x. 2 boinc boinc        68 Jun  4 00:59 shared
[2025-06-04 06:25:21] -rw-r--r--. 2 boinc boinc    508882 Jun  4 00:59 input.tar.gz
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc         0 Jun  4 00:59 boinc_lockfile
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc      2525 Jun  4 01:10 pandaJob.out
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc    986861 Jun  4 01:13 agis_schedconf.cvmfs.json
[2025-06-04 06:25:21] drwx------. 4 boinc boinc      4096 Jun  4 01:13 pilot3
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc 179879879 Jun  4 05:10 HITS.45006595._031657.pool.root.1
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc       530 Jun  4 05:10 boinc_task_state.xml
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc      1020 Jun  4 05:11 memory_monitor_summary.json
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc   1603667 Jun  4 05:11 agis_ddmendpoints.agis.ALL.json
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc    389893 Jun  4 05:11 log.45006595._031657.job.log.tgz.1
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc        95 Jun  4 05:11 pilot_heartbeat.json
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc      7698 Jun  4 05:12 heartbeat.json
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc      4611 Jun  4 05:13 pilotlog.txt
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc   1236774 Jun  4 05:13 log.45006595._031657.job.log.1
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc       357 Jun  4 05:13 output.list
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc       620 Jun  4 05:13 runtime_log
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc   1648640 Jun  4 05:13 result.tar.gz
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc       656 Jun  4 05:13 tCrLDmKYfg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVwjKDmFdL0fm.diag
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc      8659 Jun  4 05:13 runtime_log.err
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc      8192 Jun  4 06:25 boinc_mmap_file
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc        28 Jun  4 06:25 wrapper_checkpoint.txt
[2025-06-04 06:25:21] -rw-r--r--. 1 boinc boinc     20504 Jun  4 06:25 stderr.txt
[2025-06-04 06:25:21] HITS file was successfully produced:
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc 179879879 Jun  4 05:10 shared/HITS.pool.root.1
[2025-06-04 06:25:21]  *** Contents of shared directory: ***
[2025-06-04 06:25:21] total 389000
[2025-06-04 06:25:21] -rw-r--r--. 2 boinc boinc 216273334 Jun  4 00:59 ATLAS.root_0
[2025-06-04 06:25:21] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:59 start_atlas.sh
[2025-06-04 06:25:21] -rw-r--r--. 2 boinc boinc    508882 Jun  4 00:59 input.tar.gz
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc 179879879 Jun  4 05:10 HITS.pool.root.1
[2025-06-04 06:25:21] -rw-------. 1 boinc boinc   1648640 Jun  4 05:13 result.tar.gz
06:25:23 (32357): run_atlas exited; CPU time 51029.394561
06:25:23 (32357): called boinc_finish(0)

</stderr_txt>
]]>

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