Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:02:40 (6997): wrapper (7.7.26015): starting
00:02:40 (6997): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 00:02:40] Arguments: --nthreads 8
[2025-06-04 00:02:40] Threads: 8
[2025-06-04 00:02:40] Checking for CVMFS
[2025-06-04 00:02:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 00:02:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 00:02:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 00:02:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 00:02:41] 2.11.2.0 17879 32364 90492 146757 1 114 16795500 25165824 3615 130560 0 17337784 99.849 17732344 2029 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 00:02:41] CVMFS is ok
[2025-06-04 00:02:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 00:02:41] Checking for apptainer binary...
[2025-06-04 00:02:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 00:02:41] Running /usr/bin/apptainer --version
[2025-06-04 00:02:41] apptainer version 1.3.2-1.el7
[2025-06-04 00:02:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 00:02:42] cg-vwn476.simple-grid.lan
[2025-06-04 00:02:42] apptainer works
[2025-06-04 00:02:42] Set ATHENA_PROC_NUMBER=8
[2025-06-04 00:02:42] Set ATHENA_CORE_NUMBER=8
[2025-06-04 00:02:42] Starting ATLAS job with PandaID=6677551749
[2025-06-04 00:02:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:27:09]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:27:09] 2025-06-04 01:26:38,271 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6677551749/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:27:09] 2025-06-04 01:26:38,272 | INFO     | extracted standard info from prmon json
[2025-06-04 03:27:09] 2025-06-04 01:26:38,272 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 03:27:09] 2025-06-04 01:26:38,272 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:27:09] 2025-06-04 01:26:38,273 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:27:09] 2025-06-04 01:26:38,273 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:27:09] 2025-06-04 01:26:38,277 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:27:09] 2025-06-04 01:26:38,277 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 03:27:09] 2025-06-04 01:26:38,278 | INFO     | sum of deviations: 5959140142.000006
[2025-06-04 03:27:09] 2025-06-04 01:26:38,279 | INFO     | mean x: 1748994246.5
[2025-06-04 03:27:09] 2025-06-04 01:26:38,279 | INFO     | mean y: 2479039.393939394
[2025-06-04 03:27:09] 2025-06-04 01:26:38,279 | INFO     | -- intersect: -4327732000.62199
[2025-06-04 03:27:09] 2025-06-04 01:26:38,279 | INFO     | intersect: -4327732000.62199
[2025-06-04 03:27:09] 2025-06-04 01:26:38,279 | INFO     | chi2: 2.7081160641169633
[2025-06-04 03:27:09] 2025-06-04 01:26:38,280 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,281 | INFO     | sum of deviations: 18861571551.0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,281 | INFO     | mean x: 1748994094.0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,281 | INFO     | mean y: 2489877.6321243523
[2025-06-04 03:27:09] 2025-06-04 01:26:38,281 | INFO     | -- intersect: -14796345079.665396
[2025-06-04 03:27:09] 2025-06-04 01:26:38,281 | INFO     | intersect: -14796345079.665396
[2025-06-04 03:27:09] 2025-06-04 01:26:38,282 | INFO     | chi2: 1.9446371872323427
[2025-06-04 03:27:09] 2025-06-04 01:26:38,282 | INFO     | current chi2=1.9446371872323427 (change=28.192250952640336 %)
[2025-06-04 03:27:09] 2025-06-04 01:26:38,282 | INFO     | sum of square deviations: 2060343747.0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,284 | INFO     | sum of deviations: 18462770966.499992
[2025-06-04 03:27:09] 2025-06-04 01:26:38,284 | INFO     | mean x: 1748993941.5
[2025-06-04 03:27:09] 2025-06-04 01:26:38,284 | INFO     | mean y: 2489517.2819148935
[2025-06-04 03:27:09] 2025-06-04 01:26:38,284 | INFO     | -- intersect: -15670271210.499004
[2025-06-04 03:27:09] 2025-06-04 01:26:38,284 | INFO     | intersect: -15670271210.499004
[2025-06-04 03:27:09] 2025-06-04 01:26:38,284 | INFO     | chi2: 1.9463721534394482
[2025-06-04 03:27:09] 2025-06-04 01:26:38,285 | INFO     | current chi2=1.9463721534394482 (change=-0.08921798978732931 %)
[2025-06-04 03:27:09] 2025-06-04 01:26:38,285 | INFO     | right removable region: 187
[2025-06-04 03:27:09] 2025-06-04 01:26:38,290 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,292 | INFO     | sum of deviations: -30905649938.999992
[2025-06-04 03:27:09] 2025-06-04 01:26:38,292 | INFO     | mean x: 1748994399.0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,292 | INFO     | mean y: 2510380.4974093265
[2025-06-04 03:27:09] 2025-06-04 01:26:38,292 | INFO     | -- intersect: 24251162790.879986
[2025-06-04 03:27:09] 2025-06-04 01:26:38,292 | INFO     | intersect: 24251162790.879986
[2025-06-04 03:27:09] 2025-06-04 01:26:38,293 | INFO     | chi2: 0.9176514619392688
[2025-06-04 03:27:09] 2025-06-04 01:26:38,293 | INFO     | current chi2=0.9176514619392688 (change=66.11476612474924 %)
[2025-06-04 03:27:09] 2025-06-04 01:26:38,293 | INFO     | sum of square deviations: 2060343747.0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,294 | INFO     | sum of deviations: -31904008696.00001
[2025-06-04 03:27:09] 2025-06-04 01:26:38,294 | INFO     | mean x: 1748994551.5
[2025-06-04 03:27:09] 2025-06-04 01:26:38,295 | INFO     | mean y: 2511250.8829787234
[2025-06-04 03:27:09] 2025-06-04 01:26:38,295 | INFO     | -- intersect: 27085340250.44246
[2025-06-04 03:27:09] 2025-06-04 01:26:38,295 | INFO     | intersect: 27085340250.44246
[2025-06-04 03:27:09] 2025-06-04 01:26:38,295 | INFO     | chi2: 0.9010470026455036
[2025-06-04 03:27:09] 2025-06-04 01:26:38,295 | INFO     | current chi2=0.9010470026455036 (change=1.8094516254216022 %)
[2025-06-04 03:27:09] 2025-06-04 01:26:38,295 | INFO     | left removable region: 20
[2025-06-04 03:27:09] 2025-06-04 01:26:38,296 | INFO     | sum of square deviations: 1444149868.0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,297 | INFO     | sum of deviations: -5671719365.999999
[2025-06-04 03:27:09] 2025-06-04 01:26:38,297 | INFO     | mean x: 1748994521.0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,297 | INFO     | mean y: 2510482.790419162
[2025-06-04 03:27:09] 2025-06-04 01:26:38,297 | INFO     | -- intersect: 6871469387.672992
[2025-06-04 03:27:09] 2025-06-04 01:26:38,297 | INFO     | intersect: 6871469387.672992
[2025-06-04 03:27:09] 2025-06-04 01:26:38,297 | INFO     | chi2: 0.048088234022533226
[2025-06-04 03:27:09] 2025-06-04 01:26:38,297 | INFO     | -- intersect: 6871469387.672992
[2025-06-04 03:27:09] 2025-06-04 01:26:38,298 | INFO     | current memory leak: -3.93 B/s (using 167 data points, chi2=0.05)
[2025-06-04 03:27:09] 2025-06-04 01:26:38,304 | INFO     | ..............................
[2025-06-04 03:27:09] 2025-06-04 01:26:38,304 | INFO     | . Timing measurements:
[2025-06-04 03:27:09] 2025-06-04 01:26:38,304 | INFO     | . get job = 0 s
[2025-06-04 03:27:09] 2025-06-04 01:26:38,304 | INFO     | . initial setup = 2 s
[2025-06-04 03:27:09] 2025-06-04 01:26:38,304 | INFO     | . payload setup = 12 s
[2025-06-04 03:27:09] 2025-06-04 01:26:38,304 | INFO     | . stage-in = 0 s
[2025-06-04 03:27:09] 2025-06-04 01:26:38,305 | INFO     | . payload execution = 12083 s
[2025-06-04 03:27:09] 2025-06-04 01:26:38,305 | INFO     | . stage-out = 3 s
[2025-06-04 03:27:09] 2025-06-04 01:26:38,305 | INFO     | . log creation = 1 s
[2025-06-04 03:27:09] 2025-06-04 01:26:38,305 | INFO     | ..............................
[2025-06-04 03:27:09] 2025-06-04 01:26:38,456 | INFO     | 
[2025-06-04 03:27:09] 2025-06-04 01:26:38,456 | INFO     | job summary report
[2025-06-04 03:27:09] 2025-06-04 01:26:38,456 | INFO     | --------------------------------------------------
[2025-06-04 03:27:09] 2025-06-04 01:26:38,456 | INFO     | PanDA job id: 6677551749
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | task id: 45006595
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | errors: (none)
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | pilot state: finished 
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | transexitcode: 0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | exeerrorcode: 0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | exeerrordiag: 
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | exitcode: 0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | exitmsg: OK
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | cpuconsumptiontime: 45975 s
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | nevents: 400
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | neventsw: 0
[2025-06-04 03:27:09] 2025-06-04 01:26:38,457 | INFO     | pid: 19231
[2025-06-04 03:27:09] 2025-06-04 01:26:38,458 | INFO     | pgrp: 19231
[2025-06-04 03:27:09] 2025-06-04 01:26:38,458 | INFO     | corecount: 8
[2025-06-04 03:27:09] 2025-06-04 01:26:38,458 | INFO     | event service: False
[2025-06-04 03:27:09] 2025-06-04 01:26:38,458 | INFO     | sizes: {0: 2404356, 1: 2405212, 2: 2405212, 9: 2405446, 12: 2405474, 12100: 2434553, 12104: 2443550, 12194: 2443664}
[2025-06-04 03:27:09] 2025-06-04 01:26:38,458 | INFO     | --------------------------------------------------
[2025-06-04 03:27:09] 2025-06-04 01:26:38,458 | INFO     | 
[2025-06-04 03:27:09] 2025-06-04 01:26:38,458 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 03:27:09] 2025-06-04 01:26:38,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,938 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,938 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,938 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:27:09] 2025-06-04 01:26:38,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:27:09] 2025-06-04 01:26:38,940 | INFO     | job 6677551749 has completed (purged errors)
[2025-06-04 03:27:09] 2025-06-04 01:26:38,940 | INFO     | overall cleanup function is called
[2025-06-04 03:27:09] 2025-06-04 01:26:39,949 | INFO     | --- collectZombieJob: --- 10, [19231]
[2025-06-04 03:27:09] 2025-06-04 01:26:39,949 | INFO     | zombie collector waiting for pid 19231
[2025-06-04 03:27:09] 2025-06-04 01:26:39,950 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:27:09] 2025-06-04 01:26:39,950 | INFO     | collected zombie processes
[2025-06-04 03:27:09] 2025-06-04 01:26:39,950 | INFO     | will attempt to kill all subprocesses of pid=19231
[2025-06-04 03:27:09] 2025-06-04 01:26:40,063 | INFO     | process IDs to be killed: [19231] (in reverse order)
[2025-06-04 03:27:09] 2025-06-04 01:26:40,812 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:27:09] 2025-06-04 01:26:40,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:27:09] 2025-06-04 01:26:40,816 | INFO     | did not find any defunct processes belonging to 19231
[2025-06-04 03:27:09] 2025-06-04 01:26:40,819 | INFO     | did not find any defunct processes belonging to 19231
[2025-06-04 03:27:09] 2025-06-04 01:26:40,819 | INFO     | ready for new job
[2025-06-04 03:27:09] 2025-06-04 01:26:40,820 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:27:09] 2025-06-04 01:26:40,821 | INFO     | **************************************
[2025-06-04 03:27:09] 2025-06-04 01:26:40,821 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:27:09] 2025-06-04 01:26:40,822 | INFO     | **************************************
[2025-06-04 03:27:09] 2025-06-04 01:26:40,822 | INFO     | 
[2025-06-04 03:27:09] 2025-06-04 01:26:40,822 | INFO     | pilot is running in a VM
[2025-06-04 03:27:09] 2025-06-04 01:26:40,822 | INFO     | architecture information:
[2025-06-04 03:27:09] 2025-06-04 01:26:40,828 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:27:09] 2025-06-04 01:26:41,031 | INFO     | cat /etc/os-release:
[2025-06-04 03:27:09] NAME="CentOS Linux"
[2025-06-04 03:27:09] VERSION="7 (Core)"
[2025-06-04 03:27:09] ID="centos"
[2025-06-04 03:27:09] ID_LIKE="rhel fedora"
[2025-06-04 03:27:09] VERSION_ID="7"
[2025-06-04 03:27:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:27:09] ANSI_COLOR="0;31"
[2025-06-04 03:27:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:27:09] HOME_URL="https://www.centos.org/"
[2025-06-04 03:27:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:27:09] 
[2025-06-04 03:27:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:27:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:27:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:27:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:27:09] 
[2025-06-04 03:27:09] 2025-06-04 01:26:41,031 | INFO     | **************************************
[2025-06-04 03:27:09] 2025-06-04 01:26:41,535 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 03:27:09] 2025-06-04 01:26:41,604 | INFO     | sufficient remaining disk space (497033412608 B)
[2025-06-04 03:27:09] 2025-06-04 01:26:41,605 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:27:09] 2025-06-04 01:26:41,605 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:27:09] 2025-06-04 01:26:41,605 | INFO     | update_server=False
[2025-06-04 03:27:09] 2025-06-04 01:26:41,605 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:27:09] 2025-06-04 01:26:41,802 | INFO     | all data control threads have been joined
[2025-06-04 03:27:09] 2025-06-04 01:26:41,944 | INFO     | all payload control threads have been joined
[2025-06-04 03:27:09] 2025-06-04 01:26:41,982 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:27:09] 2025-06-04 01:26:42,234 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:27:09] 2025-06-04 01:26:42,234 | INFO     | aborting loop
[2025-06-04 03:27:09] 2025-06-04 01:26:42,316 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:27:09] 2025-06-04 01:26:42,317 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:27:09] 2025-06-04 01:26:42,317 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:27:09] 2025-06-04 01:26:42,611 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:42,755 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:42,788 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:42,808 | INFO     | [data] control thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:42,950 | INFO     | [payload] control thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:43,136 | INFO     | all job control threads have been joined
[2025-06-04 03:27:09] 2025-06-04 01:26:43,193 | INFO     | [job] validate thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:43,240 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:43,318 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:43,344 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:43,469 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:43,473 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:27:09] 2025-06-04 01:26:43,619 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:43,692 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:43,989 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:44,142 | INFO     | [job] control thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:44,478 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:45,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:27:09] 2025-06-04 01:26:49,056 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:27:09] 2025-06-04 01:26:49,271 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140421100414784)>', '<ExcThread(monitor, started 140420482832128)>']
[2025-06-04 03:27:09] 2025-06-04 01:26:49,360 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:27:09] 2025-06-04 01:26:49,360 | INFO     | [monitor] control thread has ended
[2025-06-04 03:27:09] 2025-06-04 01:26:54,297 | INFO     | all workflow threads have been joined
[2025-06-04 03:27:09] 2025-06-04 01:26:54,297 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:27:09] 2025-06-04 01:26:54,298 | INFO     | traces error code: 0
[2025-06-04 03:27:09] 2025-06-04 01:26:54,298 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:27:09] 2025-06-04 01:26:54,692 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:27:09] 2025-06-04 01:26:54,786 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:27:09] 2025-06-04 01:26:54,872 [wrapper] pilotpid: 10674
[2025-06-04 03:27:09] 2025-06-04 01:26:54,952 [wrapper] Pilot exit status: 0
[2025-06-04 03:27:09] 2025-06-04 01:26:55,275 [wrapper] pandaids: 6677551749
[2025-06-04 03:27:09] 2025-06-04 01:26:55,824 [wrapper] cleanup supervisor_pilot 30580 10675
[2025-06-04 03:27:09] 2025-06-04 01:26:55,846 [wrapper] Test setup, not cleaning
[2025-06-04 03:27:09] 2025-06-04 01:26:55,854 [wrapper] apfmon messages muted
[2025-06-04 03:27:09] 2025-06-04 01:26:55,858 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:27:09] 2025-06-04 01:26:55,861 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:27:09]  *** Error codes and diagnostics ***
[2025-06-04 03:27:09]     "exeErrorCode": 0,
[2025-06-04 03:27:09]     "exeErrorDiag": "",
[2025-06-04 03:27:09]     "pilotErrorCode": 0,
[2025-06-04 03:27:09]     "pilotErrorDiag": "",
[2025-06-04 03:27:09]  *** Listing of results directory ***
[2025-06-04 03:27:09] total 400200
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc    495897 Jun  3 11:07 pilot3.tar.gz
[2025-06-04 03:27:09] -rwx------. 1 boinc boinc     37140 Jun  3 11:38 runpilot2-wrapper.sh
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc      5111 Jun  3 11:38 queuedata.json
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc       100 Jun  4 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:27:09] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 00:02 run_atlas
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc       105 Jun  4 00:02 job.xml
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc      6391 Jun  4 00:02 init_data.xml
[2025-06-04 03:27:09] -rw-r--r--. 2 boinc boinc 219040737 Jun  4 00:02 EVNT.45006593._001100.pool.root.1
[2025-06-04 03:27:09] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:02 start_atlas.sh
[2025-06-04 03:27:09] drwxrwx--x. 2 boinc boinc        68 Jun  4 00:02 shared
[2025-06-04 03:27:09] -rw-r--r--. 2 boinc boinc    508880 Jun  4 00:02 input.tar.gz
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc         0 Jun  4 00:02 boinc_lockfile
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc      2525 Jun  4 00:02 pandaJob.out
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc    986869 Jun  4 00:02 agis_schedconf.cvmfs.json
[2025-06-04 03:27:09] drwx------. 4 boinc boinc      4096 Jun  4 00:03 pilot3
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc 184092276 Jun  4 03:23 HITS.45006595._027500.pool.root.1
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc       531 Jun  4 03:23 boinc_task_state.xml
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc      1019 Jun  4 03:25 memory_monitor_summary.json
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc   1603667 Jun  4 03:25 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc    362385 Jun  4 03:25 log.45006595._027500.job.log.tgz.1
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc        95 Jun  4 03:25 pilot_heartbeat.json
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc      7687 Jun  4 03:26 heartbeat.json
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc      4416 Jun  4 03:26 pilotlog.txt
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc   1064608 Jun  4 03:26 log.45006595._027500.job.log.1
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc       357 Jun  4 03:26 output.list
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc       620 Jun  4 03:26 runtime_log
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc   1443840 Jun  4 03:26 result.tar.gz
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc      8659 Jun  4 03:26 runtime_log.err
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc       657 Jun  4 03:26 9ifNDmdHdg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpFjKDmSFMBTm.diag
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc      8192 Jun  4 03:27 boinc_mmap_file
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc        28 Jun  4 03:27 wrapper_checkpoint.txt
[2025-06-04 03:27:09] -rw-r--r--. 1 boinc boinc     20493 Jun  4 03:27 stderr.txt
[2025-06-04 03:27:09] HITS file was successfully produced:
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc 184092276 Jun  4 03:23 shared/HITS.pool.root.1
[2025-06-04 03:27:09]  *** Contents of shared directory: ***
[2025-06-04 03:27:09] total 395616
[2025-06-04 03:27:09] -rw-r--r--. 2 boinc boinc 219040737 Jun  4 00:02 ATLAS.root_0
[2025-06-04 03:27:09] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:02 start_atlas.sh
[2025-06-04 03:27:09] -rw-r--r--. 2 boinc boinc    508880 Jun  4 00:02 input.tar.gz
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc 184092276 Jun  4 03:23 HITS.pool.root.1
[2025-06-04 03:27:09] -rw-------. 1 boinc boinc   1443840 Jun  4 03:26 result.tar.gz
03:27:11 (6997): run_atlas exited; CPU time 46124.467429
03:27:11 (6997): called boinc_finish(0)

</stderr_txt>
]]>

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