Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:53:28 (2956): wrapper (7.7.26015): starting
00:53:28 (2956): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 00:53:28] Arguments: --nthreads 8
[2025-06-04 00:53:28] Threads: 8
[2025-06-04 00:53:28] Checking for CVMFS
[2025-06-04 00:53:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 00:53:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 00:53:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 00:53:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 00:53:30] 2.11.2.0 14372 32381 98644 146760 2 59 24482608 25165824 3900 130560 0 16703550 99.828 19003840 2184 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 00:53:30] CVMFS is ok
[2025-06-04 00:53:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 00:53:30] Checking for apptainer binary...
[2025-06-04 00:53:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 00:53:30] Running /usr/bin/apptainer --version
[2025-06-04 00:53:30] apptainer version 1.3.2-1.el7
[2025-06-04 00:53:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:31:08] cg-vwn440.simple-grid.lan
[2025-06-04 01:31:08] apptainer works
[2025-06-04 01:31:08] Set ATHENA_PROC_NUMBER=8
[2025-06-04 01:31:08] Set ATHENA_CORE_NUMBER=8
[2025-06-04 01:31:08] Starting ATLAS job with PandaID=6677574044
[2025-06-04 01:31:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/31 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:28:25]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:28:25] 2025-06-04 03:28:04,259 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 05:28:25] 2025-06-04 03:28:04,260 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 05:28:25] 2025-06-04 03:28:04,260 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 05:28:25] 2025-06-04 03:28:04,260 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 05:28:25] 2025-06-04 03:28:04,265 | INFO     | fitting pss+swap vs Time
[2025-06-04 05:28:25] 2025-06-04 03:28:04,266 | INFO     | sum of square deviations: 3346927870.0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,267 | INFO     | sum of deviations: 78646983593.00005
[2025-06-04 05:28:25] 2025-06-04 03:28:04,267 | INFO     | mean x: 1749000870.0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,268 | INFO     | mean y: 2443768.407239819
[2025-06-04 05:28:25] 2025-06-04 03:28:04,268 | INFO     | -- intersect: -41096034618.29095
[2025-06-04 05:28:25] 2025-06-04 03:28:04,268 | INFO     | intersect: -41096034618.29095
[2025-06-04 05:28:25] 2025-06-04 03:28:04,268 | INFO     | chi2: 6.648777960675555
[2025-06-04 05:28:25] 2025-06-04 03:28:04,269 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,272 | INFO     | sum of deviations: 77035550344.5
[2025-06-04 05:28:25] 2025-06-04 03:28:04,272 | INFO     | mean x: 1749000717.5
[2025-06-04 05:28:25] 2025-06-04 03:28:04,272 | INFO     | mean y: 2442661.402777778
[2025-06-04 05:28:25] 2025-06-04 03:28:04,272 | INFO     | -- intersect: -43114782948.96888
[2025-06-04 05:28:25] 2025-06-04 03:28:04,272 | INFO     | intersect: -43114782948.96888
[2025-06-04 05:28:25] 2025-06-04 03:28:04,273 | INFO     | chi2: 6.662627026867354
[2025-06-04 05:28:25] 2025-06-04 03:28:04,273 | INFO     | current chi2=6.662627026867354 (change=-0.2082949118425968 %)
[2025-06-04 05:28:25] 2025-06-04 03:28:04,273 | INFO     | right removable region: 215
[2025-06-04 05:28:25] 2025-06-04 03:28:04,273 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,275 | INFO     | sum of deviations: 2042768152.500009
[2025-06-04 05:28:25] 2025-06-04 03:28:04,275 | INFO     | mean x: 1749001022.5
[2025-06-04 05:28:25] 2025-06-04 03:28:04,275 | INFO     | mean y: 2496328.837962963
[2025-06-04 05:28:25] 2025-06-04 03:28:04,275 | INFO     | -- intersect: -1140852557.056087
[2025-06-04 05:28:25] 2025-06-04 03:28:04,275 | INFO     | intersect: -1140852557.056087
[2025-06-04 05:28:25] 2025-06-04 03:28:04,276 | INFO     | chi2: 1.673068013426447
[2025-06-04 05:28:25] 2025-06-04 03:28:04,276 | INFO     | current chi2=1.673068013426447 (change=74.83645831877872 %)
[2025-06-04 05:28:25] 2025-06-04 03:28:04,276 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,278 | INFO     | sum of deviations: -36177289581.00001
[2025-06-04 05:28:25] 2025-06-04 03:28:04,278 | INFO     | mean x: 1749001175.0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,278 | INFO     | mean y: 2523639.180094787
[2025-06-04 05:28:25] 2025-06-04 03:28:04,278 | INFO     | -- intersect: 21725037975.125935
[2025-06-04 05:28:25] 2025-06-04 03:28:04,278 | INFO     | intersect: 21725037975.125935
[2025-06-04 05:28:25] 2025-06-04 03:28:04,279 | INFO     | chi2: 0.19268066445585896
[2025-06-04 05:28:25] 2025-06-04 03:28:04,279 | INFO     | current chi2=0.19268066445585896 (change=88.48339320878841 %)
[2025-06-04 05:28:25] 2025-06-04 03:28:04,282 | INFO     | sum of square deviations: 2710627567.5
[2025-06-04 05:28:25] 2025-06-04 03:28:04,283 | INFO     | sum of deviations: -34975323712.5
[2025-06-04 05:28:25] 2025-06-04 03:28:04,283 | INFO     | mean x: 1749001327.5
[2025-06-04 05:28:25] 2025-06-04 03:28:04,284 | INFO     | mean y: 2522682.8106796117
[2025-06-04 05:28:25] 2025-06-04 03:28:04,284 | INFO     | -- intersect: 22569948889.32687
[2025-06-04 05:28:25] 2025-06-04 03:28:04,284 | INFO     | intersect: 22569948889.32687
[2025-06-04 05:28:25] 2025-06-04 03:28:04,284 | INFO     | chi2: 0.17040871781275205
[2025-06-04 05:28:25] 2025-06-04 03:28:04,284 | INFO     | current chi2=0.17040871781275205 (change=11.5589941035361 %)
[2025-06-04 05:28:25] 2025-06-04 03:28:04,284 | INFO     | left removable region: 30
[2025-06-04 05:28:25] 2025-06-04 03:28:04,285 | INFO     | sum of square deviations: 1963274020.0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,286 | INFO     | sum of deviations: -13759422055.999998
[2025-06-04 05:28:25] 2025-06-04 03:28:04,286 | INFO     | mean x: 1749001602.0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,286 | INFO     | mean y: 2505780.2486486486
[2025-06-04 05:28:25] 2025-06-04 03:28:04,286 | INFO     | -- intersect: 12260219667.043795
[2025-06-04 05:28:25] 2025-06-04 03:28:04,287 | INFO     | intersect: 12260219667.043795
[2025-06-04 05:28:25] 2025-06-04 03:28:04,287 | INFO     | chi2: 0.10740806303074382
[2025-06-04 05:28:25] 2025-06-04 03:28:04,287 | INFO     | -- intersect: 12260219667.043795
[2025-06-04 05:28:25] 2025-06-04 03:28:04,287 | INFO     | current memory leak: -7.01 B/s (using 185 data points, chi2=0.11)
[2025-06-04 05:28:25] 2025-06-04 03:28:04,288 | INFO     | ..............................
[2025-06-04 05:28:25] 2025-06-04 03:28:04,288 | INFO     | . Timing measurements:
[2025-06-04 05:28:25] 2025-06-04 03:28:04,288 | INFO     | . get job = 0 s
[2025-06-04 05:28:25] 2025-06-04 03:28:04,288 | INFO     | . initial setup = 7 s
[2025-06-04 05:28:25] 2025-06-04 03:28:04,288 | INFO     | . payload setup = 150 s
[2025-06-04 05:28:25] 2025-06-04 03:28:04,288 | INFO     | . stage-in = 0 s
[2025-06-04 05:28:25] 2025-06-04 03:28:04,288 | INFO     | . payload execution = 13617 s
[2025-06-04 05:28:25] 2025-06-04 03:28:04,289 | INFO     | . stage-out = 3 s
[2025-06-04 05:28:25] 2025-06-04 03:28:04,289 | INFO     | . log creation = 0 s
[2025-06-04 05:28:25] 2025-06-04 03:28:04,289 | INFO     | ..............................
[2025-06-04 05:28:25] 2025-06-04 03:28:04,434 | INFO     | 
[2025-06-04 05:28:25] 2025-06-04 03:28:04,434 | INFO     | job summary report
[2025-06-04 05:28:25] 2025-06-04 03:28:04,434 | INFO     | --------------------------------------------------
[2025-06-04 05:28:25] 2025-06-04 03:28:04,434 | INFO     | PanDA job id: 6677574044
[2025-06-04 05:28:25] 2025-06-04 03:28:04,435 | INFO     | task id: 45006595
[2025-06-04 05:28:25] 2025-06-04 03:28:04,435 | INFO     | errors: (none)
[2025-06-04 05:28:25] 2025-06-04 03:28:04,435 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:28:25] 2025-06-04 03:28:04,435 | INFO     | pilot state: finished 
[2025-06-04 05:28:25] 2025-06-04 03:28:04,435 | INFO     | transexitcode: 0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,435 | INFO     | exeerrorcode: 0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,435 | INFO     | exeerrordiag: 
[2025-06-04 05:28:25] 2025-06-04 03:28:04,435 | INFO     | exitcode: 0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,435 | INFO     | exitmsg: OK
[2025-06-04 05:28:25] 2025-06-04 03:28:04,435 | INFO     | cpuconsumptiontime: 49899 s
[2025-06-04 05:28:25] 2025-06-04 03:28:04,436 | INFO     | nevents: 400
[2025-06-04 05:28:25] 2025-06-04 03:28:04,436 | INFO     | neventsw: 0
[2025-06-04 05:28:25] 2025-06-04 03:28:04,436 | INFO     | pid: 4253
[2025-06-04 05:28:25] 2025-06-04 03:28:04,436 | INFO     | pgrp: 4253
[2025-06-04 05:28:25] 2025-06-04 03:28:04,436 | INFO     | corecount: 8
[2025-06-04 05:28:25] 2025-06-04 03:28:04,436 | INFO     | event service: False
[2025-06-04 05:28:25] 2025-06-04 03:28:04,436 | INFO     | sizes: {0: 2404958, 1: 2405213, 12: 2405213, 23: 2405241, 34: 2405269, 44: 2405297, 55: 2405453, 66: 2405481, 76: 2405509, 87: 2405565, 90: 2405799, 98: 2406107, 1
[2025-06-04 05:28:25] 2025-06-04 03:28:04,436 | INFO     | --------------------------------------------------
[2025-06-04 05:28:25] 2025-06-04 03:28:04,436 | INFO     | 
[2025-06-04 05:28:25] 2025-06-04 03:28:04,437 | INFO     | executing command: ls -lF /var/lib/boinc/slots/31
[2025-06-04 05:28:25] 2025-06-04 03:28:04,554 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,554 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,554 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,554 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,554 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,555 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,555 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,555 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,555 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,555 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,555 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,555 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,555 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,555 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,555 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,556 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,556 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,556 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:28:25] 2025-06-04 03:28:04,556 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,556 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:28:25] 2025-06-04 03:28:04,556 | INFO     | job 6677574044 has completed (purged errors)
[2025-06-04 05:28:25] 2025-06-04 03:28:04,556 | INFO     | overall cleanup function is called
[2025-06-04 05:28:25] 2025-06-04 03:28:05,565 | INFO     | --- collectZombieJob: --- 10, [4253]
[2025-06-04 05:28:25] 2025-06-04 03:28:05,565 | INFO     | zombie collector waiting for pid 4253
[2025-06-04 05:28:25] 2025-06-04 03:28:05,566 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:28:25] 2025-06-04 03:28:05,566 | INFO     | collected zombie processes
[2025-06-04 05:28:25] 2025-06-04 03:28:05,566 | INFO     | will attempt to kill all subprocesses of pid=4253
[2025-06-04 05:28:25] 2025-06-04 03:28:05,670 | INFO     | process IDs to be killed: [4253] (in reverse order)
[2025-06-04 05:28:25] 2025-06-04 03:28:05,733 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:28:25] 2025-06-04 03:28:05,734 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:28:25] 2025-06-04 03:28:05,737 | INFO     | did not find any defunct processes belonging to 4253
[2025-06-04 05:28:25] 2025-06-04 03:28:05,740 | INFO     | did not find any defunct processes belonging to 4253
[2025-06-04 05:28:25] 2025-06-04 03:28:05,741 | INFO     | ready for new job
[2025-06-04 05:28:25] 2025-06-04 03:28:05,741 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:28:25] 2025-06-04 03:28:05,743 | INFO     | **************************************
[2025-06-04 05:28:25] 2025-06-04 03:28:05,743 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:28:25] 2025-06-04 03:28:05,743 | INFO     | **************************************
[2025-06-04 05:28:25] 2025-06-04 03:28:05,743 | INFO     | 
[2025-06-04 05:28:25] 2025-06-04 03:28:05,744 | INFO     | pilot is running in a VM
[2025-06-04 05:28:25] 2025-06-04 03:28:05,744 | INFO     | architecture information:
[2025-06-04 05:28:25] 2025-06-04 03:28:05,744 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:28:25] 2025-06-04 03:28:05,766 | INFO     | cat /etc/os-release:
[2025-06-04 05:28:25] NAME="CentOS Linux"
[2025-06-04 05:28:25] VERSION="7 (Core)"
[2025-06-04 05:28:25] ID="centos"
[2025-06-04 05:28:25] ID_LIKE="rhel fedora"
[2025-06-04 05:28:25] VERSION_ID="7"
[2025-06-04 05:28:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:28:25] ANSI_COLOR="0;31"
[2025-06-04 05:28:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:28:25] HOME_URL="https://www.centos.org/"
[2025-06-04 05:28:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:28:25] 
[2025-06-04 05:28:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:28:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:28:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:28:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:28:25] 
[2025-06-04 05:28:25] 2025-06-04 03:28:05,766 | INFO     | **************************************
[2025-06-04 05:28:25] 2025-06-04 03:28:06,269 | INFO     | executing command: df -mP /var/lib/boinc/slots/31
[2025-06-04 05:28:25] 2025-06-04 03:28:06,289 | INFO     | sufficient remaining disk space (496581476352 B)
[2025-06-04 05:28:25] 2025-06-04 03:28:06,290 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:28:25] 2025-06-04 03:28:06,290 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:28:25] 2025-06-04 03:28:06,290 | INFO     | update_server=False
[2025-06-04 05:28:25] 2025-06-04 03:28:06,291 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:28:25] 2025-06-04 03:28:06,291 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:28:25] 2025-06-04 03:28:06,291 | INFO     | aborting loop
[2025-06-04 05:28:25] 2025-06-04 03:28:06,291 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 05:28:25] 2025-06-04 03:28:06,292 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:28:25] 2025-06-04 03:28:06,292 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:28:25] 2025-06-04 03:28:06,292 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:28:25] 2025-06-04 03:28:06,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:28:25] 2025-06-04 03:28:06,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:28:25] 2025-06-04 03:28:07,030 | INFO     | all data control threads have been joined
[2025-06-04 05:28:25] 2025-06-04 03:28:07,131 | INFO     | all payload control threads have been joined
[2025-06-04 05:28:25] 2025-06-04 03:28:07,295 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:07,296 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:07,297 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:07,361 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:07,630 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:07,642 | INFO     | all job control threads have been joined
[2025-06-04 05:28:25] 2025-06-04 03:28:08,032 | INFO     | [data] control thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:08,048 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:08,132 | INFO     | [payload] control thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:08,179 | INFO     | [job] validate thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:08,246 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:08,316 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:08,648 | INFO     | [job] control thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:08,679 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:08,742 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:09,194 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:28:25] 2025-06-04 03:28:13,203 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:16,939 | INFO     | job.realtimelogging is not enabled
[2025-06-04 05:28:25] 2025-06-04 03:28:17,944 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:28:25] 2025-06-04 03:28:19,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139660913092416)>', '<ExcThread(monitor, started 139660189759232)>']
[2025-06-04 05:28:25] 2025-06-04 03:28:20,362 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:28:25] 2025-06-04 03:28:20,363 | INFO     | [monitor] control thread has ended
[2025-06-04 05:28:25] 2025-06-04 03:28:24,811 | INFO     | all workflow threads have been joined
[2025-06-04 05:28:25] 2025-06-04 03:28:24,811 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:28:25] 2025-06-04 03:28:24,812 | INFO     | traces error code: 0
[2025-06-04 05:28:25] 2025-06-04 03:28:24,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:28:25] 2025-06-04 03:28:25,118 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:28:25] 2025-06-04 03:28:25,130 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:28:25] 2025-06-04 03:28:25,172 [wrapper] pilotpid: 26098
[2025-06-04 05:28:25] 2025-06-04 03:28:25,182 [wrapper] Pilot exit status: 0
[2025-06-04 05:28:25] 2025-06-04 03:28:25,318 [wrapper] pandaids: 6677574044
[2025-06-04 05:28:25] 2025-06-04 03:28:25,362 [wrapper] cleanup supervisor_pilot 14794 26099
[2025-06-04 05:28:25] 2025-06-04 03:28:25,385 [wrapper] Test setup, not cleaning
[2025-06-04 05:28:25] 2025-06-04 03:28:25,439 [wrapper] apfmon messages muted
[2025-06-04 05:28:25] 2025-06-04 03:28:25,483 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:28:25] 2025-06-04 03:28:25,491 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:28:25]  *** Error codes and diagnostics ***
[2025-06-04 05:28:26]     "exeErrorCode": 0,
[2025-06-04 05:28:26]     "exeErrorDiag": "",
[2025-06-04 05:28:26]     "pilotErrorCode": 0,
[2025-06-04 05:28:26]     "pilotErrorDiag": "",
[2025-06-04 05:28:26]  *** Listing of results directory ***
[2025-06-04 05:28:26] total 385904
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc    495897 Jun  3 11:56 pilot3.tar.gz
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc      5111 Jun  3 12:07 queuedata.json
[2025-06-04 05:28:26] -rwx------. 1 boinc boinc     37140 Jun  3 12:09 runpilot2-wrapper.sh
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc       100 Jun  4 00:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:28:26] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 00:53 run_atlas
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc       105 Jun  4 00:53 job.xml
[2025-06-04 05:28:26] -rw-r--r--. 2 boinc boinc 213132844 Jun  4 00:53 EVNT.45006593._001136.pool.root.1
[2025-06-04 05:28:26] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:53 start_atlas.sh
[2025-06-04 05:28:26] drwxrwx--x. 2 boinc boinc        68 Jun  4 00:53 shared
[2025-06-04 05:28:26] -rw-r--r--. 2 boinc boinc    508879 Jun  4 00:53 input.tar.gz
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc      6393 Jun  4 00:53 init_data.xml
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc         0 Jun  4 00:53 boinc_lockfile
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc      2525 Jun  4 01:31 pandaJob.out
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc    986077 Jun  4 01:34 agis_schedconf.cvmfs.json
[2025-06-04 05:28:26] drwx------. 4 boinc boinc      4096 Jun  4 01:34 pilot3
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc 175052473 Jun  4 05:26 HITS.45006595._028414.pool.root.1
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc       531 Jun  4 05:26 boinc_task_state.xml
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc      1015 Jun  4 05:27 memory_monitor_summary.json
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc   1603667 Jun  4 05:27 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc    386607 Jun  4 05:27 log.45006595._028414.job.log.tgz.1
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc        95 Jun  4 05:27 pilot_heartbeat.json
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc      7686 Jun  4 05:28 heartbeat.json
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc      8192 Jun  4 05:28 boinc_mmap_file
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc        28 Jun  4 05:28 wrapper_checkpoint.txt
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc      4612 Jun  4 05:28 pilotlog.txt
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc   1192088 Jun  4 05:28 log.45006595._028414.job.log.1
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc       357 Jun  4 05:28 output.list
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc       620 Jun  4 05:28 runtime_log
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc   1597440 Jun  4 05:28 result.tar.gz
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc      8673 Jun  4 05:28 runtime_log.err
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc       657 Jun  4 05:28 0epLDmDldg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpOjKDmKMxAem.diag
[2025-06-04 05:28:26] -rw-r--r--. 1 boinc boinc     20501 Jun  4 05:28 stderr.txt
[2025-06-04 05:28:26] HITS file was successfully produced:
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc 175052473 Jun  4 05:26 shared/HITS.pool.root.1
[2025-06-04 05:28:26]  *** Contents of shared directory: ***
[2025-06-04 05:28:26] total 381168
[2025-06-04 05:28:26] -rw-r--r--. 2 boinc boinc 213132844 Jun  4 00:53 ATLAS.root_0
[2025-06-04 05:28:26] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:53 start_atlas.sh
[2025-06-04 05:28:26] -rw-r--r--. 2 boinc boinc    508879 Jun  4 00:53 input.tar.gz
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc 175052473 Jun  4 05:26 HITS.pool.root.1
[2025-06-04 05:28:26] -rw-------. 1 boinc boinc   1597440 Jun  4 05:28 result.tar.gz
05:28:27 (2956): run_atlas exited; CPU time 50102.067008
05:28:27 (2956): called boinc_finish(0)

</stderr_txt>
]]>

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