Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:06:33 (28197): wrapper (7.7.26015): starting
21:06:33 (28197): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 21:06:33] Arguments: --nthreads 8
[2025-06-03 21:06:33] Threads: 8
[2025-06-03 21:06:33] Checking for CVMFS
[2025-06-03 21:06:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:06:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:06:34] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:06:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:06:35] 2.11.2.0 13026 32292 89932 146750 3 154 19665972 25165824 3603 130560 0 16646912 99.836 18561375 2754 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 21:06:35] CVMFS is ok
[2025-06-03 21:06:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:06:35] Checking for apptainer binary...
[2025-06-03 21:06:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:06:35] Running /usr/bin/apptainer --version
[2025-06-03 21:06:35] apptainer version 1.3.2-1.el7
[2025-06-03 21:06:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:06:36] cg-vwn329.simple-grid.lan
[2025-06-03 21:06:36] apptainer works
[2025-06-03 21:06:36] Set ATHENA_PROC_NUMBER=8
[2025-06-03 21:06:36] Set ATHENA_CORE_NUMBER=8
[2025-06-03 21:06:36] Starting ATLAS job with PandaID=6677548518
[2025-06-03 21:06:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 01:12:03]  *** The last 200 lines of the pilot log: ***
[2025-06-04 01:12:03] 2025-06-03 22:50:28,367 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6677548518/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 01:12:03] 2025-06-03 22:50:28,367 | INFO     | extracted standard info from prmon json
[2025-06-04 01:12:03] 2025-06-03 22:50:28,368 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 01:12:03] 2025-06-03 22:50:28,368 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 01:12:03] 2025-06-03 22:50:28,368 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 01:12:03] 2025-06-03 22:50:28,368 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 01:12:03] 2025-06-03 22:50:28,373 | INFO     | fitting pss+swap vs Time
[2025-06-04 01:12:03] 2025-06-03 22:50:28,374 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 01:12:03] 2025-06-03 22:50:28,376 | INFO     | sum of deviations: 16989998800.500002
[2025-06-04 01:12:03] 2025-06-03 22:50:28,376 | INFO     | mean x: 1748984302.5
[2025-06-04 01:12:03] 2025-06-03 22:50:28,376 | INFO     | mean y: 2464488.6926605506
[2025-06-04 01:12:03] 2025-06-03 22:50:28,377 | INFO     | -- intersect: -9247509118.02801
[2025-06-04 01:12:03] 2025-06-03 22:50:28,377 | INFO     | intersect: -9247509118.02801
[2025-06-04 01:12:03] 2025-06-03 22:50:28,377 | INFO     | chi2: 2.3039663991262658
[2025-06-04 01:12:03] 2025-06-03 22:50:28,378 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,379 | INFO     | sum of deviations: 30499451365.999996
[2025-06-04 01:12:03] 2025-06-03 22:50:28,380 | INFO     | mean x: 1748984150.0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,380 | INFO     | mean y: 2473837.882629108
[2025-06-04 01:12:03] 2025-06-03 22:50:28,380 | INFO     | -- intersect: -17799585292.865517
[2025-06-04 01:12:03] 2025-06-03 22:50:28,380 | INFO     | intersect: -17799585292.865517
[2025-06-04 01:12:03] 2025-06-03 22:50:28,380 | INFO     | chi2: 1.5331570196520103
[2025-06-04 01:12:03] 2025-06-03 22:50:28,380 | INFO     | current chi2=1.5331570196520103 (change=33.45575611547849 %)
[2025-06-04 01:12:03] 2025-06-03 22:50:28,381 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,382 | INFO     | sum of deviations: 29498876753.5
[2025-06-04 01:12:03] 2025-06-03 22:50:28,383 | INFO     | mean x: 1748983997.5
[2025-06-04 01:12:03] 2025-06-03 22:50:28,383 | INFO     | mean y: 2473097.418269231
[2025-06-04 01:12:03] 2025-06-03 22:50:28,383 | INFO     | -- intersect: -18487357183.764812
[2025-06-04 01:12:03] 2025-06-03 22:50:28,383 | INFO     | intersect: -18487357183.764812
[2025-06-04 01:12:03] 2025-06-03 22:50:28,383 | INFO     | chi2: 1.5341459699817492
[2025-06-04 01:12:03] 2025-06-03 22:50:28,383 | INFO     | current chi2=1.5341459699817492 (change=-0.06450417778887117 %)
[2025-06-04 01:12:03] 2025-06-03 22:50:28,384 | INFO     | right removable region: 207
[2025-06-04 01:12:03] 2025-06-03 22:50:28,384 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,386 | INFO     | sum of deviations: -16165244731.999992
[2025-06-04 01:12:03] 2025-06-03 22:50:28,386 | INFO     | mean x: 1748984455.0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,386 | INFO     | mean y: 2487659.647887324
[2025-06-04 01:12:03] 2025-06-03 22:50:28,386 | INFO     | -- intersect: 9437893212.123594
[2025-06-04 01:12:03] 2025-06-03 22:50:28,386 | INFO     | intersect: 9437893212.123594
[2025-06-04 01:12:03] 2025-06-03 22:50:28,387 | INFO     | chi2: 0.873474278852595
[2025-06-04 01:12:03] 2025-06-03 22:50:28,387 | INFO     | current chi2=0.873474278852595 (change=62.088237086103206 %)
[2025-06-04 01:12:03] 2025-06-03 22:50:28,387 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,389 | INFO     | sum of deviations: -11303355937.0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,389 | INFO     | mean x: 1748984607.5
[2025-06-04 01:12:03] 2025-06-03 22:50:28,389 | INFO     | mean y: 2484030.9903846155
[2025-06-04 01:12:03] 2025-06-03 22:50:28,389 | INFO     | -- intersect: 7087404840.759344
[2025-06-04 01:12:03] 2025-06-03 22:50:28,389 | INFO     | intersect: 7087404840.759344
[2025-06-04 01:12:03] 2025-06-03 22:50:28,390 | INFO     | chi2: 0.848098357082614
[2025-06-04 01:12:03] 2025-06-03 22:50:28,390 | INFO     | current chi2=0.848098357082614 (change=2.9051710375851036 %)
[2025-06-04 01:12:03] 2025-06-03 22:50:28,390 | INFO     | left removable region: 20
[2025-06-04 01:12:03] 2025-06-03 22:50:28,390 | INFO     | sum of square deviations: 2027639878.0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,391 | INFO     | sum of deviations: 8173897032.0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,392 | INFO     | mean x: 1748984577.0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,392 | INFO     | mean y: 2488555.3796791444
[2025-06-04 01:12:03] 2025-06-03 22:50:28,392 | INFO     | -- intersect: -7048082898.687016
[2025-06-04 01:12:03] 2025-06-03 22:50:28,392 | INFO     | intersect: -7048082898.687016
[2025-06-04 01:12:03] 2025-06-03 22:50:28,392 | INFO     | chi2: 0.0007770552401979195
[2025-06-04 01:12:03] 2025-06-03 22:50:28,393 | INFO     | -- intersect: -7048082898.687016
[2025-06-04 01:12:03] 2025-06-03 22:50:28,393 | INFO     | current memory leak: 4.03 B/s (using 187 data points, chi2=0.00)
[2025-06-04 01:12:03] 2025-06-03 22:50:28,394 | INFO     | ..............................
[2025-06-04 01:12:03] 2025-06-03 22:50:28,394 | INFO     | . Timing measurements:
[2025-06-04 01:12:03] 2025-06-03 22:50:28,394 | INFO     | . get job = 0 s
[2025-06-04 01:12:03] 2025-06-03 22:50:28,394 | INFO     | . initial setup = 2 s
[2025-06-04 01:12:03] 2025-06-03 22:50:28,394 | INFO     | . payload setup = 13 s
[2025-06-04 01:12:03] 2025-06-03 22:50:28,394 | INFO     | . stage-in = 0 s
[2025-06-04 01:12:03] 2025-06-03 22:50:28,394 | INFO     | . payload execution = 13268 s
[2025-06-04 01:12:03] 2025-06-03 22:50:28,394 | INFO     | . stage-out = 2 s
[2025-06-04 01:12:03] 2025-06-03 22:50:28,394 | INFO     | . log creation = 0 s
[2025-06-04 01:12:03] 2025-06-03 22:50:28,395 | INFO     | ..............................
[2025-06-04 01:12:03] 2025-06-03 22:50:28,523 | INFO     | 
[2025-06-04 01:12:03] 2025-06-03 22:50:28,524 | INFO     | job summary report
[2025-06-04 01:12:03] 2025-06-03 22:50:28,524 | INFO     | --------------------------------------------------
[2025-06-04 01:12:03] 2025-06-03 22:50:28,524 | INFO     | PanDA job id: 6677548518
[2025-06-04 01:12:03] 2025-06-03 22:50:28,524 | INFO     | task id: 45006595
[2025-06-04 01:12:03] 2025-06-03 22:50:28,524 | INFO     | errors: (none)
[2025-06-04 01:12:03] 2025-06-03 22:50:28,524 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 01:12:03] 2025-06-03 22:50:28,524 | INFO     | pilot state: finished 
[2025-06-04 01:12:03] 2025-06-03 22:50:28,524 | INFO     | transexitcode: 0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,525 | INFO     | exeerrorcode: 0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,525 | INFO     | exeerrordiag: 
[2025-06-04 01:12:03] 2025-06-03 22:50:28,525 | INFO     | exitcode: 0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,525 | INFO     | exitmsg: OK
[2025-06-04 01:12:03] 2025-06-03 22:50:28,525 | INFO     | cpuconsumptiontime: 50274 s
[2025-06-04 01:12:03] 2025-06-03 22:50:28,525 | INFO     | nevents: 400
[2025-06-04 01:12:03] 2025-06-03 22:50:28,525 | INFO     | neventsw: 0
[2025-06-04 01:12:03] 2025-06-03 22:50:28,525 | INFO     | pid: 10374
[2025-06-04 01:12:03] 2025-06-03 22:50:28,525 | INFO     | pgrp: 10374
[2025-06-04 01:12:03] 2025-06-03 22:50:28,526 | INFO     | corecount: 8
[2025-06-04 01:12:03] 2025-06-03 22:50:28,526 | INFO     | event service: False
[2025-06-04 01:12:03] 2025-06-03 22:50:28,526 | INFO     | sizes: {0: 2405184, 1: 2405212, 12: 2405446, 23: 2405446, 13286: 2435097, 13290: 2444038, 13292: 2444222, 13378: 2444392}
[2025-06-04 01:12:03] 2025-06-03 22:50:28,526 | INFO     | --------------------------------------------------
[2025-06-04 01:12:03] 2025-06-03 22:50:28,526 | INFO     | 
[2025-06-04 01:12:03] 2025-06-03 22:50:28,526 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-04 01:12:03] 2025-06-03 22:50:29,010 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,010 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,011 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,011 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,011 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,011 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,011 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,011 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,011 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,011 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,011 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,011 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,012 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,012 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,012 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,012 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,012 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,012 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 01:12:03] 2025-06-03 22:50:29,012 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,012 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 01:12:03] 2025-06-03 22:50:29,012 | INFO     | job 6677548518 has completed (purged errors)
[2025-06-04 01:12:03] 2025-06-03 22:50:29,012 | INFO     | overall cleanup function is called
[2025-06-04 01:12:03] 2025-06-03 22:50:30,022 | INFO     | --- collectZombieJob: --- 10, [10374]
[2025-06-04 01:12:03] 2025-06-03 22:50:30,022 | INFO     | zombie collector waiting for pid 10374
[2025-06-04 01:12:03] 2025-06-03 22:50:30,022 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 01:12:03] 2025-06-03 22:50:30,022 | INFO     | collected zombie processes
[2025-06-04 01:12:03] 2025-06-03 22:50:30,022 | INFO     | will attempt to kill all subprocesses of pid=10374
[2025-06-04 01:12:03] 2025-06-03 22:50:30,138 | INFO     | process IDs to be killed: [10374] (in reverse order)
[2025-06-04 01:12:03] 2025-06-03 22:50:30,297 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 01:12:03] 2025-06-03 22:50:30,297 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 01:12:03] 2025-06-03 22:50:30,301 | INFO     | did not find any defunct processes belonging to 10374
[2025-06-04 01:12:03] 2025-06-03 22:50:30,304 | INFO     | did not find any defunct processes belonging to 10374
[2025-06-04 01:12:03] 2025-06-03 22:50:30,304 | INFO     | ready for new job
[2025-06-04 01:12:03] 2025-06-03 22:50:30,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 01:12:03] 2025-06-03 22:50:30,307 | INFO     | **************************************
[2025-06-04 01:12:03] 2025-06-03 22:50:30,307 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 01:12:03] 2025-06-03 22:50:30,307 | INFO     | **************************************
[2025-06-04 01:12:03] 2025-06-03 22:50:30,307 | INFO     | 
[2025-06-04 01:12:03] 2025-06-03 22:50:30,308 | INFO     | pilot is running in a VM
[2025-06-04 01:12:03] 2025-06-03 22:50:30,308 | INFO     | architecture information:
[2025-06-04 01:12:03] 2025-06-03 22:50:30,308 | INFO     | executing command: cat /etc/os-release
[2025-06-04 01:12:03] 2025-06-03 22:50:30,334 | INFO     | cat /etc/os-release:
[2025-06-04 01:12:03] NAME="CentOS Linux"
[2025-06-04 01:12:03] VERSION="7 (Core)"
[2025-06-04 01:12:03] ID="centos"
[2025-06-04 01:12:03] ID_LIKE="rhel fedora"
[2025-06-04 01:12:03] VERSION_ID="7"
[2025-06-04 01:12:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 01:12:03] ANSI_COLOR="0;31"
[2025-06-04 01:12:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 01:12:03] HOME_URL="https://www.centos.org/"
[2025-06-04 01:12:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 01:12:03] 
[2025-06-04 01:12:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 01:12:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 01:12:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 01:12:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 01:12:03] 
[2025-06-04 01:12:03] 2025-06-03 22:50:30,334 | INFO     | **************************************
[2025-06-04 01:12:03] 2025-06-03 22:50:30,842 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-04 01:12:03] 2025-06-03 22:50:30,941 | INFO     | sufficient remaining disk space (496985178112 B)
[2025-06-04 01:12:03] 2025-06-03 22:50:30,941 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 01:12:03] 2025-06-03 22:50:30,941 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 01:12:03] 2025-06-03 22:50:30,942 | INFO     | update_server=False
[2025-06-04 01:12:03] 2025-06-03 22:50:30,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 01:12:03] 2025-06-03 22:50:30,943 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 01:12:03] 2025-06-03 22:50:30,949 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 01:12:03] 2025-06-03 22:50:30,981 | INFO     | all data control threads have been joined
[2025-06-04 01:12:03] 2025-06-03 22:50:31,047 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 01:12:03] 2025-06-03 22:50:31,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 01:12:03] 2025-06-03 22:50:31,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 01:12:03] 2025-06-03 22:50:31,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 01:12:03] 2025-06-03 22:50:31,391 | INFO     | aborting loop
[2025-06-04 01:12:03] 2025-06-03 22:50:31,949 | INFO     | [job] retrieve thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:31,987 | INFO     | [data] control thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:32,048 | INFO     | all job control threads have been joined
[2025-06-04 01:12:03] 2025-06-03 22:50:32,174 | INFO     | [payload] failed_post thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:32,223 | INFO     | all payload control threads have been joined
[2025-06-04 01:12:03] 2025-06-03 22:50:32,243 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:32,397 | INFO     | [job] job monitor thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:32,430 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:32,554 | INFO     | [payload] validate_post thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:32,937 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:32,950 | INFO     | [data] copytool_out thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:33,008 | INFO     | [data] copytool_in thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:33,054 | INFO     | [job] control thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:33,213 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:33,229 | INFO     | [payload] control thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:33,361 | INFO     | [job] validate thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:33,538 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 01:12:03] 2025-06-03 22:50:34,544 | INFO     | [job] queue monitor thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:34,958 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 01:12:03] 2025-06-03 22:50:36,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139893468669760)>', '<ExcThread(monitor, started 139893032339200)>']
[2025-06-04 01:12:03] 2025-06-03 22:50:37,083 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 01:12:03] 2025-06-03 22:50:37,084 | INFO     | [monitor] control thread has ended
[2025-06-04 01:12:03] 2025-06-03 22:50:42,010 | INFO     | all workflow threads have been joined
[2025-06-04 01:12:03] 2025-06-03 22:50:42,010 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 01:12:03] 2025-06-03 22:50:42,010 | INFO     | traces error code: 0
[2025-06-04 01:12:03] 2025-06-03 22:50:42,011 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 01:12:03] 2025-06-03 22:50:42,347 [wrapper] ==== pilot stdout END ====
[2025-06-04 01:12:03] 2025-06-03 22:50:42,376 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 01:12:03] 2025-06-03 22:50:42,408 [wrapper] pilotpid: 753
[2025-06-04 01:12:03] 2025-06-03 22:50:42,439 [wrapper] Pilot exit status: 0
[2025-06-04 01:12:03] 2025-06-03 22:50:42,797 [wrapper] pandaids: 6677548518
[2025-06-04 01:12:03] 2025-06-03 22:50:43,198 [wrapper] cleanup supervisor_pilot 31153 755
[2025-06-04 01:12:03] 2025-06-03 22:50:43,294 [wrapper] Test setup, not cleaning
[2025-06-04 01:12:03] 2025-06-03 22:50:43,353 [wrapper] apfmon messages muted
[2025-06-04 01:12:03] 2025-06-03 22:50:43,443 [wrapper] ==== wrapper stdout END ====
[2025-06-04 01:12:03] 2025-06-03 22:50:43,544 [wrapper] ==== wrapper stderr END ====
[2025-06-04 01:12:03]  *** Error codes and diagnostics ***
[2025-06-04 01:12:03]     "exeErrorCode": 0,
[2025-06-04 01:12:03]     "exeErrorDiag": "",
[2025-06-04 01:12:03]     "pilotErrorCode": 0,
[2025-06-04 01:12:03]     "pilotErrorDiag": "",
[2025-06-04 01:12:03]  *** Listing of results directory ***
[2025-06-04 01:12:03] total 390968
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc    495897 Jun  3 10:43 pilot3.tar.gz
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc      5111 Jun  3 10:53 queuedata.json
[2025-06-04 01:12:03] -rwx------. 1 boinc boinc     37140 Jun  3 10:55 runpilot2-wrapper.sh
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc       100 Jun  3 21:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 01:12:03] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 21:06 run_atlas
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc       105 Jun  3 21:06 job.xml
[2025-06-04 01:12:03] -rw-r--r--. 2 boinc boinc 216156976 Jun  3 21:06 EVNT.45006593._001052.pool.root.1
[2025-06-04 01:12:03] -rw-r--r--. 2 boinc boinc     15093 Jun  3 21:06 start_atlas.sh
[2025-06-04 01:12:03] drwxrwx--x. 2 boinc boinc        68 Jun  3 21:06 shared
[2025-06-04 01:12:03] -rw-r--r--. 2 boinc boinc    508881 Jun  3 21:06 input.tar.gz
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc      6391 Jun  3 21:06 init_data.xml
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc         0 Jun  3 21:06 boinc_lockfile
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc      2525 Jun  3 21:06 pandaJob.out
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc    985078 Jun  3 21:06 agis_schedconf.cvmfs.json
[2025-06-04 01:12:03] drwx------. 4 boinc boinc      4096 Jun  3 21:06 pilot3
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc 177298130 Jun  4 00:47 HITS.45006595._026305.pool.root.1
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc       531 Jun  4 00:47 boinc_task_state.xml
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc      1017 Jun  4 00:48 memory_monitor_summary.json
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc   1603667 Jun  4 00:48 agis_ddmendpoints.agis.ALL.json
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc    379524 Jun  4 00:48 log.45006595._026305.job.log.tgz.1
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc      7686 Jun  4 00:50 heartbeat.json
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc        95 Jun  4 00:50 pilot_heartbeat.json
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc      4416 Jun  4 00:50 pilotlog.txt
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc   1162143 Jun  4 00:50 log.45006595._026305.job.log.1
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc       357 Jun  4 00:50 output.list
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc       620 Jun  4 00:50 runtime_log
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc   1556480 Jun  4 00:50 result.tar.gz
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc      8659 Jun  4 00:50 runtime_log.err
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc       656 Jun  4 00:50 rdjLDmibcg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmd3XKDmjbMLVo.diag
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc      8192 Jun  4 01:12 boinc_mmap_file
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc        28 Jun  4 01:12 wrapper_checkpoint.txt
[2025-06-04 01:12:03] -rw-r--r--. 1 boinc boinc     20483 Jun  4 01:12 stderr.txt
[2025-06-04 01:12:03] HITS file was successfully produced:
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc 177298130 Jun  4 00:47 shared/HITS.pool.root.1
[2025-06-04 01:12:03]  *** Contents of shared directory: ***
[2025-06-04 01:12:03] total 386272
[2025-06-04 01:12:03] -rw-r--r--. 2 boinc boinc 216156976 Jun  3 21:06 ATLAS.root_0
[2025-06-04 01:12:03] -rw-r--r--. 2 boinc boinc     15093 Jun  3 21:06 start_atlas.sh
[2025-06-04 01:12:03] -rw-r--r--. 2 boinc boinc    508881 Jun  3 21:06 input.tar.gz
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc 177298130 Jun  4 00:47 HITS.pool.root.1
[2025-06-04 01:12:03] -rw-------. 1 boinc boinc   1556480 Jun  4 00:50 result.tar.gz
01:12:05 (28197): run_atlas exited; CPU time 50441.622026
01:12:05 (28197): called boinc_finish(0)

</stderr_txt>
]]>

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