Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:22:03 (2027068): wrapper (7.7.26015): starting
08:22:03 (2027068): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 08:22:03] Arguments: --nthreads 4
[2025-06-05 08:22:03] Threads: 4
[2025-06-05 08:22:03] Checking for CVMFS
[2025-06-05 08:22:03] No cvmfs_config command found, will try listing directly
[2025-06-05 08:22:03] CVMFS is ok
[2025-06-05 08:22:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 08:22:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 08:22:03] Further information can be found at the LHC@home message board.
[2025-06-05 08:22:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:22:03] Checking for apptainer binary...
[2025-06-05 08:22:03] which: no apptainer in ((null))
[2025-06-05 08:22:03] apptainer is not installed, using version from CVMFS
[2025-06-05 08:22:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:22:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-06-05 08:22:04] apptainer works
[2025-06-05 08:22:04] Set ATHENA_PROC_NUMBER=4
[2025-06-05 08:22:04] Set ATHENA_CORE_NUMBER=4
[2025-06-05 08:22:04] Starting ATLAS job with PandaID=6677581186
[2025-06-05 08:22:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:20:15 (2258403): wrapper (7.7.26015): starting
10:20:15 (2258403): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 10:20:15] Arguments: --nthreads 4
[2025-06-05 10:20:15] Threads: 4
[2025-06-05 10:20:15] This job has been restarted, cleaning up previous attempt
[2025-06-05 10:20:15] Checking for CVMFS
[2025-06-05 10:20:15] No cvmfs_config command found, will try listing directly
[2025-06-05 10:20:15] CVMFS is ok
[2025-06-05 10:20:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 10:20:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 10:20:15] Further information can be found at the LHC@home message board.
[2025-06-05 10:20:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 10:20:15] Checking for apptainer binary...
[2025-06-05 10:20:15] which: no apptainer in ((null))
[2025-06-05 10:20:15] apptainer is not installed, using version from CVMFS
[2025-06-05 10:20:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 10:20:15] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-06-05 10:20:15] apptainer works
[2025-06-05 10:20:15] Set ATHENA_PROC_NUMBER=4
[2025-06-05 10:20:15] Set ATHENA_CORE_NUMBER=4
[2025-06-05 10:20:15] Starting ATLAS job with PandaID=6677581186
[2025-06-05 10:20:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 13:04:06]  *** The last 200 lines of the pilot log: ***
[2025-06-05 13:04:06] 2025-06-05 11:01:05,553 | INFO     | monitor loop #703: job 0:6677581186 is in state 'finished'
[2025-06-05 13:04:06] 2025-06-05 11:01:05,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:04:06] 2025-06-05 11:01:08,056 | INFO     | monitor loop #704: job 0:6677581186 is in state 'finished'
[2025-06-05 13:04:06] 2025-06-05 11:01:08,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:04:06] 2025-06-05 11:01:10,558 | INFO     | monitor loop #705: job 0:6677581186 is in state 'finished'
[2025-06-05 13:04:06] 2025-06-05 11:01:10,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:04:06] 2025-06-05 11:01:10,799 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 13:04:06] 2025-06-05 11:01:10,799 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6677581186/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 13:04:06] 2025-06-05 11:01:10,800 | INFO     | extracted standard info from prmon json
[2025-06-05 13:04:06] 2025-06-05 11:01:10,801 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 13:04:06] 2025-06-05 11:01:10,801 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 13:04:06] 2025-06-05 11:01:10,801 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 13:04:06] 2025-06-05 11:01:10,801 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 13:04:06] 2025-06-05 11:01:10,805 | INFO     | fitting pss+swap vs Time
[2025-06-05 13:04:06] 2025-06-05 11:01:10,805 | INFO     | sum of square deviations: 1223016419.5
[2025-06-05 13:04:06] 2025-06-05 11:01:10,806 | INFO     | sum of deviations: -7187726105.500005
[2025-06-05 13:04:06] 2025-06-05 11:01:10,806 | INFO     | mean x: 1749116439.5
[2025-06-05 13:04:06] 2025-06-05 11:01:10,806 | INFO     | mean y: 2358195.6265822784
[2025-06-05 13:04:06] 2025-06-05 11:01:10,807 | INFO     | -- intersect: 10281999329.87496
[2025-06-05 13:04:06] 2025-06-05 11:01:10,807 | INFO     | intersect: 10281999329.87496
[2025-06-05 13:04:06] 2025-06-05 11:01:10,807 | INFO     | chi2: 1.639756984901012
[2025-06-05 13:04:06] 2025-06-05 11:01:10,807 | INFO     | sum of square deviations: 1110539892.0
[2025-06-05 13:04:06] 2025-06-05 11:01:10,808 | INFO     | sum of deviations: -6639518586.999998
[2025-06-05 13:04:06] 2025-06-05 11:01:10,808 | INFO     | mean x: 1749116287.0
[2025-06-05 13:04:06] 2025-06-05 11:01:10,808 | INFO     | mean y: 2358943.3921568627
[2025-06-05 13:04:06] 2025-06-05 11:01:10,808 | INFO     | -- intersect: 10459696119.678772
[2025-06-05 13:04:06] 2025-06-05 11:01:10,808 | INFO     | intersect: 10459696119.678772
[2025-06-05 13:04:06] 2025-06-05 11:01:10,809 | INFO     | chi2: 1.63921333381944
[2025-06-05 13:04:06] 2025-06-05 11:01:10,809 | INFO     | current chi2=1.63921333381944 (change=0.033154369005782315 %)
[2025-06-05 13:04:06] 2025-06-05 11:01:10,809 | INFO     | right removable region: 152
[2025-06-05 13:04:06] 2025-06-05 11:01:10,809 | INFO     | sum of square deviations: 1110539892.0
[2025-06-05 13:04:06] 2025-06-05 11:01:10,810 | INFO     | sum of deviations: -30234993674.000004
[2025-06-05 13:04:06] 2025-06-05 11:01:10,810 | INFO     | mean x: 1749116592.0
[2025-06-05 13:04:06] 2025-06-05 11:01:10,810 | INFO     | mean y: 2388984.3725490198
[2025-06-05 13:04:06] 2025-06-05 11:01:10,810 | INFO     | -- intersect: 47622946764.57739
[2025-06-05 13:04:06] 2025-06-05 11:01:10,811 | INFO     | intersect: 47622946764.57739
[2025-06-05 13:04:06] 2025-06-05 11:01:10,811 | INFO     | chi2: 0.0859394797367807
[2025-06-05 13:04:06] 2025-06-05 11:01:10,811 | INFO     | current chi2=0.0859394797367807 (change=94.75901121153214 %)
[2025-06-05 13:04:06] 2025-06-05 11:01:10,811 | INFO     | sum of square deviations: 1005179777.0
[2025-06-05 13:04:06] 2025-06-05 11:01:10,812 | INFO     | sum of deviations: -25321447883.000008
[2025-06-05 13:04:06] 2025-06-05 11:01:10,812 | INFO     | mean x: 1749116744.5
[2025-06-05 13:04:06] 2025-06-05 11:01:10,812 | INFO     | mean y: 2381840.7297297297
[2025-06-05 13:04:06] 2025-06-05 11:01:10,812 | INFO     | -- intersect: 44064319317.55124
[2025-06-05 13:04:06] 2025-06-05 11:01:10,812 | INFO     | intersect: 44064319317.55124
[2025-06-05 13:04:06] 2025-06-05 11:01:10,813 | INFO     | chi2: 0.07559830984697548
[2025-06-05 13:04:06] 2025-06-05 11:01:10,813 | INFO     | current chi2=0.07559830984697548 (change=12.033084120916984 %)
[2025-06-05 13:04:06] 2025-06-05 11:01:10,813 | INFO     | left removable region: 20
[2025-06-05 13:04:06] 2025-06-05 11:01:10,813 | INFO     | sum of square deviations: 713140813.0
[2025-06-05 13:04:06] 2025-06-05 11:01:10,814 | INFO     | sum of deviations: -17244070114.0
[2025-06-05 13:04:06] 2025-06-05 11:01:10,814 | INFO     | mean x: 1749116866.5
[2025-06-05 13:04:06] 2025-06-05 11:01:10,814 | INFO     | mean y: 2372096.909090909
[2025-06-05 13:04:06] 2025-06-05 11:01:10,814 | INFO     | -- intersect: 42296815681.791916
[2025-06-05 13:04:06] 2025-06-05 11:01:10,814 | INFO     | intersect: 42296815681.791916
[2025-06-05 13:04:06] 2025-06-05 11:01:10,814 | INFO     | chi2: 0.060809019700966555
[2025-06-05 13:04:06] 2025-06-05 11:01:10,815 | INFO     | -- intersect: 42296815681.791916
[2025-06-05 13:04:06] 2025-06-05 11:01:10,815 | INFO     | current memory leak: -24.18 B/s (using 132 data points, chi2=0.06)
[2025-06-05 13:04:06] 2025-06-05 11:01:10,815 | INFO     | ..............................
[2025-06-05 13:04:06] 2025-06-05 11:01:10,816 | INFO     | . Timing measurements:
[2025-06-05 13:04:06] 2025-06-05 11:01:10,816 | INFO     | . get job = 0 s
[2025-06-05 13:04:06] 2025-06-05 11:01:10,816 | INFO     | . initial setup = 1 s
[2025-06-05 13:04:06] 2025-06-05 11:01:10,816 | INFO     | . payload setup = 6 s
[2025-06-05 13:04:06] 2025-06-05 11:01:10,816 | INFO     | . stage-in = 0 s
[2025-06-05 13:04:06] 2025-06-05 11:01:10,816 | INFO     | . payload execution = 9611 s
[2025-06-05 13:04:06] 2025-06-05 11:01:10,816 | INFO     | . stage-out = 1 s
[2025-06-05 13:04:06] 2025-06-05 11:01:10,816 | INFO     | . log creation = 0 s
[2025-06-05 13:04:06] 2025-06-05 11:01:10,816 | INFO     | ..............................
[2025-06-05 13:04:06] 2025-06-05 11:01:11,155 | INFO     | 
[2025-06-05 13:04:06] 2025-06-05 11:01:11,156 | INFO     | job summary report
[2025-06-05 13:04:06] 2025-06-05 11:01:11,156 | INFO     | --------------------------------------------------
[2025-06-05 13:04:06] 2025-06-05 11:01:11,156 | INFO     | PanDA job id: 6677581186
[2025-06-05 13:04:06] 2025-06-05 11:01:11,156 | INFO     | task id: 45006595
[2025-06-05 13:04:06] 2025-06-05 11:01:11,156 | INFO     | errors: (none)
[2025-06-05 13:04:06] 2025-06-05 11:01:11,156 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 13:04:06] 2025-06-05 11:01:11,156 | INFO     | pilot state: finished 
[2025-06-05 13:04:06] 2025-06-05 11:01:11,156 | INFO     | transexitcode: 0
[2025-06-05 13:04:06] 2025-06-05 11:01:11,156 | INFO     | exeerrorcode: 0
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | exeerrordiag: 
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | exitcode: 0
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | exitmsg: OK
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | cpuconsumptiontime: 36839 s
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | nevents: 400
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | neventsw: 0
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | pid: 2269185
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | pgrp: 2269185
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | corecount: 4
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | event service: False
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | sizes: {0: 2396514, 1: 2397381, 5: 2397587, 12: 2397643, 9620: 2425992, 9622: 2435139, 9630: 2435253}
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | --------------------------------------------------
[2025-06-05 13:04:06] 2025-06-05 11:01:11,157 | INFO     | 
[2025-06-05 13:04:06] 2025-06-05 11:01:11,158 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-06-05 13:04:06] 2025-06-05 11:01:11,180 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,180 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,180 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,181 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,181 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,181 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,181 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,181 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,181 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,181 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,181 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,181 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,181 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,181 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,182 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,182 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,182 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,182 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 13:04:06] 2025-06-05 11:01:11,182 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,182 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 13:04:06] 2025-06-05 11:01:11,182 | INFO     | job 6677581186 has completed (purged errors)
[2025-06-05 13:04:06] 2025-06-05 11:01:11,182 | INFO     | overall cleanup function is called
[2025-06-05 13:04:06] 2025-06-05 11:01:12,175 | INFO     | PID=2262210 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 13:04:06] 2025-06-05 11:01:12,175 | INFO     | .. there are 7 such processes running
[2025-06-05 13:04:06] 2025-06-05 11:01:12,190 | INFO     | --- collectZombieJob: --- 10, [2269185]
[2025-06-05 13:04:06] 2025-06-05 11:01:12,191 | INFO     | zombie collector waiting for pid 2269185
[2025-06-05 13:04:06] 2025-06-05 11:01:12,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 13:04:06] 2025-06-05 11:01:12,191 | INFO     | collected zombie processes
[2025-06-05 13:04:06] 2025-06-05 11:01:12,191 | INFO     | will attempt to kill all subprocesses of pid=2269185
[2025-06-05 13:04:06] 2025-06-05 11:01:12,553 | INFO     | process IDs to be killed: [2269185] (in reverse order)
[2025-06-05 13:04:06] 2025-06-05 11:01:12,660 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 13:04:06] 2025-06-05 11:01:12,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 13:04:06] 2025-06-05 11:01:12,671 | INFO     | did not find any defunct processes belonging to 2269185
[2025-06-05 13:04:06] 2025-06-05 11:01:12,683 | INFO     | did not find any defunct processes belonging to 2269185
[2025-06-05 13:04:06] 2025-06-05 11:01:12,683 | INFO     | ready for new job
[2025-06-05 13:04:06] 2025-06-05 11:01:12,683 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 13:04:06] 2025-06-05 11:01:12,685 | INFO     | **************************************
[2025-06-05 13:04:06] 2025-06-05 11:01:12,685 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 13:04:06] 2025-06-05 11:01:12,685 | INFO     | **************************************
[2025-06-05 13:04:06] 2025-06-05 11:01:12,685 | INFO     | 
[2025-06-05 13:04:06] 2025-06-05 11:01:12,689 | INFO     | architecture information:
[2025-06-05 13:04:06] 2025-06-05 11:01:12,690 | INFO     | executing command: cat /etc/os-release
[2025-06-05 13:04:06] 2025-06-05 11:01:12,705 | INFO     | cat /etc/os-release:
[2025-06-05 13:04:06] NAME="CentOS Linux"
[2025-06-05 13:04:06] VERSION="7 (Core)"
[2025-06-05 13:04:06] ID="centos"
[2025-06-05 13:04:06] ID_LIKE="rhel fedora"
[2025-06-05 13:04:06] VERSION_ID="7"
[2025-06-05 13:04:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 13:04:06] ANSI_COLOR="0;31"
[2025-06-05 13:04:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 13:04:06] HOME_URL="https://www.centos.org/"
[2025-06-05 13:04:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 13:04:06] 
[2025-06-05 13:04:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 13:04:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 13:04:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 13:04:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 13:04:06] 
[2025-06-05 13:04:06] 2025-06-05 11:01:12,706 | INFO     | **************************************
[2025-06-05 13:04:06] 2025-06-05 11:01:13,209 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-06-05 13:04:06] 2025-06-05 11:01:13,226 | INFO     | sufficient remaining disk space (666163478528 B)
[2025-06-05 13:04:06] 2025-06-05 11:01:13,226 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 13:04:06] 2025-06-05 11:01:13,226 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 13:04:06] 2025-06-05 11:01:13,226 | INFO     | update_server=False
[2025-06-05 13:04:06] 2025-06-05 11:01:13,227 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 13:04:06] 2025-06-05 11:01:13,363 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 13:04:06] 2025-06-05 11:01:13,451 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 13:04:06] 2025-06-05 11:01:13,470 | INFO     | all data control threads have been joined
[2025-06-05 13:04:06] 2025-06-05 11:01:13,952 | INFO     | all payload control threads have been joined
[2025-06-05 13:04:06] 2025-06-05 11:01:14,065 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:04:06] 2025-06-05 11:01:14,066 | INFO     | aborting loop
[2025-06-05 13:04:06] 2025-06-05 11:01:14,181 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 13:04:06] 2025-06-05 11:01:14,181 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 13:04:06] 2025-06-05 11:01:14,181 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 13:04:06] 2025-06-05 11:01:14,232 | INFO     | [job] retrieve thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:14,294 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:14,476 | INFO     | [data] control thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:14,927 | INFO     | all job control threads have been joined
[2025-06-05 13:04:06] 2025-06-05 11:01:14,954 | INFO     | [payload] control thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:15,071 | INFO     | [job] job monitor thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:15,111 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:15,201 | INFO     | [payload] validate_post thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:15,220 | INFO     | [job] validate thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:15,221 | INFO     | [payload] failed_post thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:15,326 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:15,370 | INFO     | [data] copytool_out thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:15,487 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:15,615 | INFO     | [data] copytool_in thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:15,925 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:04:06] 2025-06-05 11:01:15,934 | INFO     | [job] control thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:16,930 | INFO     | [job] queue monitor thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:17,457 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 13:04:06] 2025-06-05 11:01:18,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23315753695040)>', '<ExcThread(monitor, started 23315519338240)>']
[2025-06-05 13:04:06] 2025-06-05 11:01:19,205 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 13:04:06] 2025-06-05 11:01:19,206 | INFO     | [monitor] control thread has ended
[2025-06-05 13:04:06] 2025-06-05 11:01:23,357 | INFO     | all workflow threads have been joined
[2025-06-05 13:04:06] 2025-06-05 11:01:23,357 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 13:04:06] 2025-06-05 11:01:23,358 | INFO     | traces error code: 0
[2025-06-05 13:04:06] 2025-06-05 11:01:23,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 13:04:06] 2025-06-05 11:01:23,506 [wrapper] ==== pilot stdout END ====
[2025-06-05 13:04:06] 2025-06-05 11:01:23,509 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 13:04:06] 2025-06-05 11:01:23,511 [wrapper] pilotpid: 2262210
[2025-06-05 13:04:06] 2025-06-05 11:01:23,514 [wrapper] Pilot exit status: 0
[2025-06-05 13:04:06] 2025-06-05 11:01:23,526 [wrapper] pandaids: 6677581186 6677581186
[2025-06-05 13:04:06] 2025-06-05 11:01:23,595 [wrapper] cleanup supervisor_pilot 2521682 2262211
[2025-06-05 13:04:06] 2025-06-05 11:01:23,598 [wrapper] Test setup, not cleaning
[2025-06-05 13:04:06] 2025-06-05 11:01:23,600 [wrapper] apfmon messages muted
[2025-06-05 13:04:06] 2025-06-05 11:01:23,603 [wrapper] ==== wrapper stdout END ====
[2025-06-05 13:04:06] 2025-06-05 11:01:23,605 [wrapper] ==== wrapper stderr END ====
[2025-06-05 13:04:06]  *** Error codes and diagnostics ***
[2025-06-05 13:04:06]     "exeErrorCode": 0,
[2025-06-05 13:04:06]     "exeErrorDiag": "",
[2025-06-05 13:04:06]     "pilotErrorCode": 0,
[2025-06-05 13:04:06]     "pilotErrorDiag": "",
[2025-06-05 13:04:06]  *** Listing of results directory ***
[2025-06-05 13:04:06] total 600972
[2025-06-05 13:04:06] drwx------ 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc    495897 Jun  3 12:57 pilot3.tar.gz
[2025-06-05 13:04:06] -rwx------ 1 boinc boinc     37140 Jun  3 13:28 runpilot2-wrapper.sh
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc      5111 Jun  3 13:28 queuedata.json
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc       100 Jun  5 08:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 13:04:06] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 08:21 run_atlas
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc       105 Jun  5 08:21 job.xml
[2025-06-05 13:04:06] -rw-r--r-- 3 boinc boinc 213074963 Jun  5 08:22 EVNT.45006593._001230.pool.root.1
[2025-06-05 13:04:06] -rw-r--r-- 3 boinc boinc 213074963 Jun  5 08:22 ATLAS.root_0
[2025-06-05 13:04:06] -rw-r--r-- 2 boinc boinc     15093 Jun  5 08:22 start_atlas.sh
[2025-06-05 13:04:06] drwxrwx--x 2 boinc boinc      4096 Jun  5 08:22 shared
[2025-06-05 13:04:06] -rw-r--r-- 2 boinc boinc    508881 Jun  5 08:22 input.tar.gz
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc         0 Jun  5 08:22 boinc_lockfile
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc      6641 Jun  5 10:20 init_data.xml
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc      2525 Jun  5 10:20 pandaJob.out
[2025-06-05 13:04:06] -rw------- 1 boinc boinc    983281 Jun  5 10:20 agis_schedconf.cvmfs.json
[2025-06-05 13:04:06] -rw------- 1 boinc boinc 182965077 Jun  5 13:00 HITS.45006595._030699.pool.root.1
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc       529 Jun  5 13:00 boinc_task_state.xml
[2025-06-05 13:04:06] -rw------- 1 boinc boinc      1035 Jun  5 13:00 memory_monitor_summary.json
[2025-06-05 13:04:06] -rw------- 1 boinc boinc   1598969 Jun  5 13:01 agis_ddmendpoints.agis.ALL.json
[2025-06-05 13:04:06] -rw------- 1 boinc boinc    306718 Jun  5 13:01 log.45006595._030699.job.log.tgz.1
[2025-06-05 13:04:06] -rw------- 1 boinc boinc        96 Jun  5 13:01 pilot_heartbeat.json
[2025-06-05 13:04:06] -rw------- 1 boinc boinc      7728 Jun  5 13:01 heartbeat.json
[2025-06-05 13:04:06] -rw------- 1 boinc boinc      4363 Jun  5 13:01 pilotlog.txt
[2025-06-05 13:04:06] -rw------- 1 boinc boinc    912570 Jun  5 13:01 log.45006595._030699.job.log.1
[2025-06-05 13:04:06] -rw------- 1 boinc boinc       357 Jun  5 13:01 output.list
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc       620 Jun  5 13:01 runtime_log
[2025-06-05 13:04:06] -rw------- 1 boinc boinc   1239040 Jun  5 13:01 result.tar.gz
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc      9102 Jun  5 13:01 runtime_log.err
[2025-06-05 13:04:06] -rw------- 1 boinc boinc       787 Jun  5 13:01 q2JMDmH0eg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6mjKDm6U36ym.diag
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc        27 Jun  5 13:03 wrapper_checkpoint.txt
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc      8192 Jun  5 13:04 boinc_mmap_file
[2025-06-05 13:04:06] -rw-r--r-- 1 boinc boinc     22855 Jun  5 13:04 stderr.txt
[2025-06-05 13:04:07] HITS file was successfully produced:
[2025-06-05 13:04:07] -rw------- 1 boinc boinc 182965077 Jun  5 13:00 shared/HITS.pool.root.1
[2025-06-05 13:04:07]  *** Contents of shared directory: ***
[2025-06-05 13:04:07] total 388500
[2025-06-05 13:04:07] -rw-r--r-- 3 boinc boinc 213074963 Jun  5 08:22 ATLAS.root_0
[2025-06-05 13:04:07] -rw-r--r-- 2 boinc boinc     15093 Jun  5 08:22 start_atlas.sh
[2025-06-05 13:04:07] -rw-r--r-- 2 boinc boinc    508881 Jun  5 08:22 input.tar.gz
[2025-06-05 13:04:07] -rw------- 1 boinc boinc 182965077 Jun  5 13:00 HITS.pool.root.1
[2025-06-05 13:04:07] -rw------- 1 boinc boinc   1239040 Jun  5 13:01 result.tar.gz
13:04:08 (2258403): run_atlas exited; CPU time 37185.631720
13:04:08 (2258403): called boinc_finish(0)

</stderr_txt>
]]>

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