Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:49:04 (3355926): wrapper (7.7.26015): starting
06:49:04 (3355926): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 06:49:04] Arguments: --nthreads 4
[2025-06-06 06:49:04] Threads: 4
[2025-06-06 06:49:04] Checking for CVMFS
[2025-06-06 06:49:04] No cvmfs_config command found, will try listing directly
[2025-06-06 06:49:04] CVMFS is ok
[2025-06-06 06:49:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 06:49:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 06:49:04] Further information can be found at the LHC@home message board.
[2025-06-06 06:49:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 06:49:04] Checking for apptainer binary...
[2025-06-06 06:49:04] which: no apptainer in ((null))
[2025-06-06 06:49:04] apptainer is not installed, using version from CVMFS
[2025-06-06 06:49:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 06:49:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-06-06 06:49:04] apptainer works
[2025-06-06 06:49:04] Set ATHENA_PROC_NUMBER=4
[2025-06-06 06:49:04] Set ATHENA_CORE_NUMBER=4
[2025-06-06 06:49:04] Starting ATLAS job with PandaID=6677550722
[2025-06-06 06:49:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 08:20:52]  *** The last 200 lines of the pilot log: ***
[2025-06-06 08:20:52]  is_tar=False
[2025-06-06 08:20:52]  lfn=log.45006595._027229.job.log.tgz.1
[2025-06-06 08:20:52]  mtime=0
[2025-06-06 08:20:52]  protocol_id=None
[2025-06-06 08:20:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 08:20:52]  replicas=None
[2025-06-06 08:20:52]  scope=mc23_13p6TeV
[2025-06-06 08:20:52]  status=None
[2025-06-06 08:20:52]  status_code=0
[2025-06-06 08:20:52]  storage_token=
[2025-06-06 08:20:52]  surl=/scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677550722/log.45006595._027229.job.log.tgz.1
[2025-06-06 08:20:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/10/log.45006595._027229.job.log.tgz.1
[2025-06-06 08:20:52]  workdir=None
[2025-06-06 08:20:52] ]
[2025-06-06 08:20:52] 2025-06-06 06:20:26,835 | INFO     | transferring file log.45006595._027229.job.log.tgz.1 from /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677550722/log.45006595._027229.job.log.tgz.1 to /scratch/b
[2025-06-06 08:20:52] 2025-06-06 06:20:26,835 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677550722/log.45006595._027229.job.log.tgz.1 /scratch/boinc/var/slot72/slots/0/lo
[2025-06-06 08:20:52] 2025-06-06 06:20:26,854 | INFO     | adding to output.list: log.45006595._027229.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/10/log.45006595._027229.job.log.tg
[2025-06-06 08:20:52] 2025-06-06 06:20:26,854 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 08:20:52] 2025-06-06 06:20:26,854 | INFO     | summary of transferred files:
[2025-06-06 08:20:52] 2025-06-06 06:20:26,854 | INFO     |  -- lfn=log.45006595._027229.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 08:20:52] 2025-06-06 06:20:26,854 | INFO     | stage-out finished correctly
[2025-06-06 08:20:52] 2025-06-06 06:20:27,389 | INFO     | PID=3359936 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-06 08:20:52] 2025-06-06 06:20:27,390 | INFO     | .. there are 2 such processes running
[2025-06-06 08:20:52] 2025-06-06 06:20:27,499 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 08:20:52] 2025-06-06 06:20:27,616 | INFO     | monitor loop #399: job 0:6677550722 is in state 'finished'
[2025-06-06 08:20:52] 2025-06-06 06:20:27,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 08:20:52] 2025-06-06 06:20:28,200 | INFO     | job 6677550722 has state=finished
[2025-06-06 08:20:52] 2025-06-06 06:20:28,202 | INFO     | preparing for final server update for job 6677550722 in state='finished'
[2025-06-06 08:20:52] 2025-06-06 06:20:28,203 | INFO     | this job has now completed (state=finished)
[2025-06-06 08:20:52] 2025-06-06 06:20:28,203 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 08:20:52] 2025-06-06 06:20:28,203 | INFO     | log transfer has been attempted: DONE
[2025-06-06 08:20:52] 2025-06-06 06:20:28,203 | INFO     | job 6677550722 has finished - writing final server update
[2025-06-06 08:20:52] 2025-06-06 06:20:28,203 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2357181/.job.ad'
[2025-06-06 08:20:52] 2025-06-06 06:20:28,203 | INFO     | total number of processed events: 400 (read)
[2025-06-06 08:20:52] 2025-06-06 06:20:28,211 | INFO     | executing command: lscpu
[2025-06-06 08:20:52] 2025-06-06 06:20:28,291 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 08:20:52] 2025-06-06 06:20:30,120 | INFO     | monitor loop #400: job 0:6677550722 is in state 'finished'
[2025-06-06 08:20:52] 2025-06-06 06:20:30,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 08:20:52] 2025-06-06 06:20:32,524 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 08:20:52] 2025-06-06 06:20:32,524 | INFO     | using path: /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677550722/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 08:20:52] 2025-06-06 06:20:32,525 | INFO     | extracted standard info from prmon json
[2025-06-06 08:20:52] 2025-06-06 06:20:32,525 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 08:20:52] 2025-06-06 06:20:32,525 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 08:20:52] 2025-06-06 06:20:32,526 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 08:20:52] 2025-06-06 06:20:32,526 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 08:20:52] 2025-06-06 06:20:32,527 | INFO     | fitting pss+swap vs Time
[2025-06-06 08:20:52] 2025-06-06 06:20:32,528 | INFO     | sum of square deviations: 177275882.0
[2025-06-06 08:20:52] 2025-06-06 06:20:32,528 | INFO     | sum of deviations: -16166813591.0
[2025-06-06 08:20:52] 2025-06-06 06:20:32,528 | INFO     | mean x: 1749188188.0
[2025-06-06 08:20:52] 2025-06-06 06:20:32,528 | INFO     | mean y: 2452595.4457831327
[2025-06-06 08:20:52] 2025-06-06 06:20:32,528 | INFO     | -- intersect: 159521046168.00552
[2025-06-06 08:20:52] 2025-06-06 06:20:32,528 | INFO     | intersect: 159521046168.00552
[2025-06-06 08:20:52] 2025-06-06 06:20:32,528 | INFO     | chi2: 0.19280722878044498
[2025-06-06 08:20:52] 2025-06-06 06:20:32,528 | INFO     | -- intersect: 159521046168.00552
[2025-06-06 08:20:52] 2025-06-06 06:20:32,528 | INFO     | current memory leak: -91.20 B/s (using 83 data points, chi2=0.19)
[2025-06-06 08:20:52] 2025-06-06 06:20:32,529 | INFO     | ..............................
[2025-06-06 08:20:52] 2025-06-06 06:20:32,529 | INFO     | . Timing measurements:
[2025-06-06 08:20:52] 2025-06-06 06:20:32,529 | INFO     | . get job = 0 s
[2025-06-06 08:20:52] 2025-06-06 06:20:32,529 | INFO     | . initial setup = 1 s
[2025-06-06 08:20:52] 2025-06-06 06:20:32,529 | INFO     | . payload setup = 6 s
[2025-06-06 08:20:52] 2025-06-06 06:20:32,529 | INFO     | . stage-in = 0 s
[2025-06-06 08:20:52] 2025-06-06 06:20:32,529 | INFO     | . payload execution = 5445 s
[2025-06-06 08:20:52] 2025-06-06 06:20:32,529 | INFO     | . stage-out = 0 s
[2025-06-06 08:20:52] 2025-06-06 06:20:32,529 | INFO     | . log creation = 0 s
[2025-06-06 08:20:52] 2025-06-06 06:20:32,529 | INFO     | ..............................
[2025-06-06 08:20:52] 2025-06-06 06:20:32,588 | INFO     | 
[2025-06-06 08:20:52] 2025-06-06 06:20:32,588 | INFO     | job summary report
[2025-06-06 08:20:52] 2025-06-06 06:20:32,588 | INFO     | --------------------------------------------------
[2025-06-06 08:20:52] 2025-06-06 06:20:32,588 | INFO     | PanDA job id: 6677550722
[2025-06-06 08:20:52] 2025-06-06 06:20:32,588 | INFO     | task id: 45006595
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | errors: (none)
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | pilot state: finished 
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | transexitcode: 0
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | exeerrorcode: 0
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | exeerrordiag: 
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | exitcode: 0
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | exitmsg: OK
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | cpuconsumptiontime: 20660 s
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | nevents: 400
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | neventsw: 0
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | pid: 3367319
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | pgrp: 3367319
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | corecount: 4
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | event service: False
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | sizes: {0: 2396514, 1: 2397381, 5: 2397587, 12: 2397643, 5456: 2424153, 5457: 2433116, 5458: 2433300, 5463: 2433470}
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | --------------------------------------------------
[2025-06-06 08:20:52] 2025-06-06 06:20:32,589 | INFO     | 
[2025-06-06 08:20:52] 2025-06-06 06:20:32,590 | INFO     | executing command: ls -lF /scratch/boinc/var/slot72/slots/0
[2025-06-06 08:20:52] 2025-06-06 06:20:32,610 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,610 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,610 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,610 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,610 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,611 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 08:20:52] 2025-06-06 06:20:32,612 | INFO     | job 6677550722 has completed (purged errors)
[2025-06-06 08:20:52] 2025-06-06 06:20:32,612 | INFO     | overall cleanup function is called
[2025-06-06 08:20:52] 2025-06-06 06:20:33,620 | INFO     | --- collectZombieJob: --- 10, [3367319]
[2025-06-06 08:20:52] 2025-06-06 06:20:33,621 | INFO     | zombie collector waiting for pid 3367319
[2025-06-06 08:20:52] 2025-06-06 06:20:33,621 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 08:20:52] 2025-06-06 06:20:33,621 | INFO     | collected zombie processes
[2025-06-06 08:20:52] 2025-06-06 06:20:33,621 | INFO     | will attempt to kill all subprocesses of pid=3367319
[2025-06-06 08:20:52] 2025-06-06 06:20:33,961 | INFO     | process IDs to be killed: [3367319] (in reverse order)
[2025-06-06 08:20:52] 2025-06-06 06:20:34,080 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 08:20:52] 2025-06-06 06:20:34,080 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 08:20:52] 2025-06-06 06:20:34,096 | INFO     | did not find any defunct processes belonging to 3367319
[2025-06-06 08:20:52] 2025-06-06 06:20:34,108 | INFO     | did not find any defunct processes belonging to 3367319
[2025-06-06 08:20:52] 2025-06-06 06:20:34,108 | INFO     | ready for new job
[2025-06-06 08:20:52] 2025-06-06 06:20:34,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 08:20:52] 2025-06-06 06:20:34,109 | INFO     | **************************************
[2025-06-06 08:20:52] 2025-06-06 06:20:34,109 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 08:20:52] 2025-06-06 06:20:34,109 | INFO     | **************************************
[2025-06-06 08:20:52] 2025-06-06 06:20:34,109 | INFO     | 
[2025-06-06 08:20:52] 2025-06-06 06:20:34,115 | INFO     | architecture information:
[2025-06-06 08:20:52] 2025-06-06 06:20:34,115 | INFO     | executing command: cat /etc/os-release
[2025-06-06 08:20:52] 2025-06-06 06:20:34,129 | INFO     | cat /etc/os-release:
[2025-06-06 08:20:52] NAME="CentOS Linux"
[2025-06-06 08:20:52] VERSION="7 (Core)"
[2025-06-06 08:20:52] ID="centos"
[2025-06-06 08:20:52] ID_LIKE="rhel fedora"
[2025-06-06 08:20:52] VERSION_ID="7"
[2025-06-06 08:20:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 08:20:52] ANSI_COLOR="0;31"
[2025-06-06 08:20:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 08:20:52] HOME_URL="https://www.centos.org/"
[2025-06-06 08:20:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 08:20:52] 
[2025-06-06 08:20:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 08:20:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 08:20:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 08:20:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 08:20:52] 
[2025-06-06 08:20:52] 2025-06-06 06:20:34,130 | INFO     | **************************************
[2025-06-06 08:20:52] 2025-06-06 06:20:34,633 | INFO     | executing command: df -mP /scratch/boinc/var/slot72/slots/0
[2025-06-06 08:20:52] 2025-06-06 06:20:34,651 | INFO     | sufficient remaining disk space (3302350651392 B)
[2025-06-06 08:20:52] 2025-06-06 06:20:34,652 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 08:20:52] 2025-06-06 06:20:34,652 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 08:20:52] 2025-06-06 06:20:34,652 | INFO     | update_server=False
[2025-06-06 08:20:52] 2025-06-06 06:20:34,652 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 08:20:52] 2025-06-06 06:20:34,864 | INFO     | all job control threads have been joined
[2025-06-06 08:20:52] 2025-06-06 06:20:34,922 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 08:20:52] 2025-06-06 06:20:35,133 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 08:20:52] 2025-06-06 06:20:35,133 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 08:20:52] 2025-06-06 06:20:35,133 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 08:20:52] 2025-06-06 06:20:35,133 | INFO     | will abort loop
[2025-06-06 08:20:52] 2025-06-06 06:20:35,244 | INFO     | all data control threads have been joined
[2025-06-06 08:20:52] 2025-06-06 06:20:35,413 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 08:20:52] 2025-06-06 06:20:35,413 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 08:20:52] 2025-06-06 06:20:35,413 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 08:20:52] 2025-06-06 06:20:35,657 | INFO     | [job] retrieve thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:35,695 | INFO     | [payload] failed_post thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:35,719 | INFO     | [job] validate thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:35,869 | INFO     | [job] control thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:35,896 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:35,998 | INFO     | all payload control threads have been joined
[2025-06-06 08:20:52] 2025-06-06 06:20:36,096 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:36,139 | INFO     | [job] job monitor thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:36,221 | INFO     | [data] copytool_in thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:36,249 | INFO     | [data] control thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:36,696 | INFO     | [payload] validate_post thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:36,928 | INFO     | [data] copytool_out thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:37,004 | INFO     | [payload] control thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:37,027 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:37,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 08:20:52] 2025-06-06 06:20:38,064 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 08:20:52] 2025-06-06 06:20:38,604 | INFO     | [job] queue monitor thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:42,070 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:44,772 | INFO     | job.realtimelogging is not enabled
[2025-06-06 08:20:52] 2025-06-06 06:20:45,777 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 08:20:52] 2025-06-06 06:20:47,406 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23151140239168)>', '<ExcThread(monitor, started 23150905497344)>']
[2025-06-06 08:20:52] 2025-06-06 06:20:47,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 08:20:52] 2025-06-06 06:20:47,474 | INFO     | [monitor] control thread has ended
[2025-06-06 08:20:52] 2025-06-06 06:20:52,431 | INFO     | all workflow threads have been joined
[2025-06-06 08:20:52] 2025-06-06 06:20:52,432 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 08:20:52] 2025-06-06 06:20:52,432 | INFO     | traces error code: 0
[2025-06-06 08:20:52] 2025-06-06 06:20:52,432 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 08:20:52] 2025-06-06 06:20:52,577 [wrapper] ==== pilot stdout END ====
[2025-06-06 08:20:52] 2025-06-06 06:20:52,579 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 08:20:52] 2025-06-06 06:20:52,581 [wrapper] pilotpid: 3359936
[2025-06-06 08:20:52] 2025-06-06 06:20:52,583 [wrapper] Pilot exit status: 0
[2025-06-06 08:20:52] 2025-06-06 06:20:52,594 [wrapper] pandaids: 6677550722
[2025-06-06 08:20:52] 2025-06-06 06:20:52,681 [wrapper] cleanup supervisor_pilot 3503416 3359937
[2025-06-06 08:20:52] 2025-06-06 06:20:52,684 [wrapper] Test setup, not cleaning
[2025-06-06 08:20:52] 2025-06-06 06:20:52,687 [wrapper] apfmon messages muted
[2025-06-06 08:20:52] 2025-06-06 06:20:52,690 [wrapper] ==== wrapper stdout END ====
[2025-06-06 08:20:52] 2025-06-06 06:20:52,692 [wrapper] ==== wrapper stderr END ====
[2025-06-06 08:20:52]  *** Error codes and diagnostics ***
[2025-06-06 08:20:52]     "exeErrorCode": 0,
[2025-06-06 08:20:52]     "exeErrorDiag": "",
[2025-06-06 08:20:52]     "pilotErrorCode": 0,
[2025-06-06 08:20:52]     "pilotErrorDiag": "",
[2025-06-06 08:20:52]  *** Listing of results directory ***
[2025-06-06 08:20:52] total 397176
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc    495897 Jun  3 11:07 pilot3.tar.gz
[2025-06-06 08:20:52] -rwx------ 1 boinc boinc     37140 Jun  3 11:28 runpilot2-wrapper.sh
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc      5111 Jun  3 11:28 queuedata.json
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc       100 Jun  6 06:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 08:20:52] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 06:48 run_atlas
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc       105 Jun  6 06:48 job.xml
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc      6686 Jun  6 06:49 init_data.xml
[2025-06-06 08:20:52] -rw-r--r-- 2 boinc boinc 214101473 Jun  6 06:49 EVNT.45006593._001089.pool.root.1
[2025-06-06 08:20:52] -rw-r--r-- 2 boinc boinc     15093 Jun  6 06:49 start_atlas.sh
[2025-06-06 08:20:52] drwxrwx--x 2 boinc boinc      4096 Jun  6 06:49 shared
[2025-06-06 08:20:52] -rw-r--r-- 2 boinc boinc    508881 Jun  6 06:49 input.tar.gz
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc         0 Jun  6 06:49 boinc_lockfile
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc      2525 Jun  6 06:49 pandaJob.out
[2025-06-06 08:20:52] -rw------- 1 boinc boinc    988125 Jun  6 06:49 agis_schedconf.cvmfs.json
[2025-06-06 08:20:52] -rw------- 1 boinc boinc   1598969 Jun  6 06:49 agis_ddmendpoints.agis.ALL.json
[2025-06-06 08:20:52] drwx------ 4 boinc boinc      4096 Jun  6 06:49 pilot3
[2025-06-06 08:20:52] -rw------- 1 boinc boinc 187215551 Jun  6 08:20 HITS.45006595._027229.pool.root.1
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc       528 Jun  6 08:20 boinc_task_state.xml
[2025-06-06 08:20:52] -rw------- 1 boinc boinc        95 Jun  6 08:20 pilot_heartbeat.json
[2025-06-06 08:20:52] -rw------- 1 boinc boinc      1026 Jun  6 08:20 memory_monitor_summary.json
[2025-06-06 08:20:52] -rw------- 1 boinc boinc    246550 Jun  6 08:20 log.45006595._027229.job.log.tgz.1
[2025-06-06 08:20:52] -rw------- 1 boinc boinc      7699 Jun  6 08:20 heartbeat.json
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc      8192 Jun  6 08:20 boinc_mmap_file
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc        26 Jun  6 08:20 wrapper_checkpoint.txt
[2025-06-06 08:20:52] -rw------- 1 boinc boinc      4622 Jun  6 08:20 pilotlog.txt
[2025-06-06 08:20:52] -rw------- 1 boinc boinc    532294 Jun  6 08:20 log.45006595._027229.job.log.1
[2025-06-06 08:20:52] -rw------- 1 boinc boinc       357 Jun  6 08:20 output.list
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc       620 Jun  6 08:20 runtime_log
[2025-06-06 08:20:52] -rw------- 1 boinc boinc    798720 Jun  6 08:20 result.tar.gz
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc      9025 Jun  6 08:20 runtime_log.err
[2025-06-06 08:20:52] -rw------- 1 boinc boinc       663 Jun  6 08:20 9OiKDm97cg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmX8XKDmNuISPm.diag
[2025-06-06 08:20:52] -rw-r--r-- 1 boinc boinc     21380 Jun  6 08:20 stderr.txt
[2025-06-06 08:20:52] HITS file was successfully produced:
[2025-06-06 08:20:52] -rw------- 1 boinc boinc 187215551 Jun  6 08:20 shared/HITS.pool.root.1
[2025-06-06 08:20:52]  *** Contents of shared directory: ***
[2025-06-06 08:20:52] total 393216
[2025-06-06 08:20:52] -rw-r--r-- 2 boinc boinc 214101473 Jun  6 06:49 ATLAS.root_0
[2025-06-06 08:20:52] -rw-r--r-- 2 boinc boinc     15093 Jun  6 06:49 start_atlas.sh
[2025-06-06 08:20:52] -rw-r--r-- 2 boinc boinc    508881 Jun  6 06:49 input.tar.gz
[2025-06-06 08:20:52] -rw------- 1 boinc boinc 187215551 Jun  6 08:20 HITS.pool.root.1
[2025-06-06 08:20:52] -rw------- 1 boinc boinc    798720 Jun  6 08:20 result.tar.gz
08:20:53 (3355926): run_atlas exited; CPU time 20854.074314
08:20:53 (3355926): called boinc_finish(0)

</stderr_txt>
]]>

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