Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:31:20 (29972): wrapper (7.7.26015): starting
22:31:20 (29972): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 22:31:20] Arguments: --nthreads 8
[2025-06-03 22:31:20] Threads: 8
[2025-06-03 22:31:20] Checking for CVMFS
[2025-06-03 22:31:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 22:31:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 22:31:21] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 22:31:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 22:31:21] 2.11.2.0 2191 32239 92784 146755 3 263 25081862 25165825 3751 130560 0 16315496 99.784 19674082 2333 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 22:31:21] CVMFS is ok
[2025-06-03 22:31:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:31:21] Checking for apptainer binary...
[2025-06-03 22:31:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 22:31:21] Running /usr/bin/apptainer --version
[2025-06-03 22:31:21] apptainer version 1.3.2-1.el7
[2025-06-03 22:31:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 22:31:23] cg-vwn409.simple-grid.lan
[2025-06-03 22:31:23] apptainer works
[2025-06-03 22:31:23] Set ATHENA_PROC_NUMBER=8
[2025-06-03 22:31:23] Set ATHENA_CORE_NUMBER=8
[2025-06-03 22:31:23] Starting ATLAS job with PandaID=6668233319
[2025-06-03 22:31:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:04:24]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:04:24] 2025-06-04 02:03:20,791 | INFO     | extracted standard info from prmon json
[2025-06-04 07:04:24] 2025-06-04 02:03:20,791 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:04:24] 2025-06-04 02:03:20,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:04:24] 2025-06-04 02:03:20,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:04:24] 2025-06-04 02:03:20,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:04:24] 2025-06-04 02:03:20,799 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:04:24] 2025-06-04 02:03:20,800 | INFO     | sum of square deviations: 9971385099.5
[2025-06-04 07:04:24] 2025-06-04 02:03:20,803 | INFO     | sum of deviations: -96998199772.5
[2025-06-04 07:04:24] 2025-06-04 02:03:20,803 | INFO     | mean x: 1748992778.5
[2025-06-04 07:04:24] 2025-06-04 02:03:20,803 | INFO     | mean y: 2543970.5
[2025-06-04 07:04:24] 2025-06-04 02:03:20,803 | INFO     | -- intersect: 17016143308.681177
[2025-06-04 07:04:24] 2025-06-04 02:03:20,804 | INFO     | intersect: 17016143308.681177
[2025-06-04 07:04:24] 2025-06-04 02:03:20,804 | INFO     | chi2: 2.6494763072707563
[2025-06-04 07:04:24] 2025-06-04 02:03:20,805 | INFO     | sum of square deviations: 9508390372.0
[2025-06-04 07:04:24] 2025-06-04 02:03:20,808 | INFO     | sum of deviations: -73514784156.0
[2025-06-04 07:04:24] 2025-06-04 02:03:20,808 | INFO     | mean x: 1748992626.0
[2025-06-04 07:04:24] 2025-06-04 02:03:20,808 | INFO     | mean y: 2551616.61341853
[2025-06-04 07:04:24] 2025-06-04 02:03:20,808 | INFO     | -- intersect: 13525010241.09885
[2025-06-04 07:04:24] 2025-06-04 02:03:20,808 | INFO     | intersect: 13525010241.09885
[2025-06-04 07:04:24] 2025-06-04 02:03:20,809 | INFO     | chi2: 1.8743600771847992
[2025-06-04 07:04:24] 2025-06-04 02:03:20,809 | INFO     | current chi2=1.8743600771847992 (change=29.255450518989907 %)
[2025-06-04 07:04:24] 2025-06-04 02:03:20,810 | INFO     | sum of square deviations: 9059954057.0
[2025-06-04 07:04:24] 2025-06-04 02:03:20,813 | INFO     | sum of deviations: -71516076639.0
[2025-06-04 07:04:24] 2025-06-04 02:03:20,813 | INFO     | mean x: 1748992473.5
[2025-06-04 07:04:24] 2025-06-04 02:03:20,813 | INFO     | mean y: 2552296.409090909
[2025-06-04 07:04:24] 2025-06-04 02:03:20,813 | INFO     | -- intersect: 13808481000.784658
[2025-06-04 07:04:24] 2025-06-04 02:03:20,813 | INFO     | intersect: 13808481000.784658
[2025-06-04 07:04:24] 2025-06-04 02:03:20,814 | INFO     | chi2: 1.8722689787696496
[2025-06-04 07:04:24] 2025-06-04 02:03:20,814 | INFO     | current chi2=1.8722689787696496 (change=0.11156332449688013 %)
[2025-06-04 07:04:24] 2025-06-04 02:03:20,814 | INFO     | right removable region: 307
[2025-06-04 07:04:24] 2025-06-04 02:03:20,815 | INFO     | sum of square deviations: 9508390372.0
[2025-06-04 07:04:24] 2025-06-04 02:03:20,818 | INFO     | sum of deviations: -149377125800.9999
[2025-06-04 07:04:24] 2025-06-04 02:03:20,818 | INFO     | mean x: 1748992931.0
[2025-06-04 07:04:24] 2025-06-04 02:03:20,819 | INFO     | mean y: 2561113.1501597445
[2025-06-04 07:04:24] 2025-06-04 02:03:20,819 | INFO     | -- intersect: 27479297643.488163
[2025-06-04 07:04:24] 2025-06-04 02:03:20,819 | INFO     | intersect: 27479297643.488163
[2025-06-04 07:04:24] 2025-06-04 02:03:20,819 | INFO     | chi2: 1.1087158501546348
[2025-06-04 07:04:24] 2025-06-04 02:03:20,819 | INFO     | current chi2=1.1087158501546348 (change=58.153396310354985 %)
[2025-06-04 07:04:24] 2025-06-04 02:03:20,820 | INFO     | sum of square deviations: 9059954057.0
[2025-06-04 07:04:24] 2025-06-04 02:03:20,823 | INFO     | sum of deviations: -151235749990.0001
[2025-06-04 07:04:24] 2025-06-04 02:03:20,823 | INFO     | mean x: 1748993083.5
[2025-06-04 07:04:24] 2025-06-04 02:03:20,823 | INFO     | mean y: 2561728.350649351
[2025-06-04 07:04:24] 2025-06-04 02:03:20,824 | INFO     | -- intersect: 29198105000.016197
[2025-06-04 07:04:24] 2025-06-04 02:03:20,824 | INFO     | intersect: 29198105000.016197
[2025-06-04 07:04:24] 2025-06-04 02:03:20,824 | INFO     | chi2: 1.0758465910083808
[2025-06-04 07:04:24] 2025-06-04 02:03:20,825 | INFO     | current chi2=1.0758465910083808 (change=2.964624267044591 %)
[2025-06-04 07:04:24] 2025-06-04 02:03:20,825 | INFO     | left removable region: 20
[2025-06-04 07:04:24] 2025-06-04 02:03:20,825 | INFO     | sum of square deviations: 7330250928.0
[2025-06-04 07:04:24] 2025-06-04 02:03:20,828 | INFO     | sum of deviations: -109156940988.99998
[2025-06-04 07:04:24] 2025-06-04 02:03:20,828 | INFO     | mean x: 1748993053.0
[2025-06-04 07:04:24] 2025-06-04 02:03:20,828 | INFO     | mean y: 2565288.8571428573
[2025-06-04 07:04:24] 2025-06-04 02:03:20,828 | INFO     | -- intersect: 26047339656.299088
[2025-06-04 07:04:24] 2025-06-04 02:03:20,828 | INFO     | intersect: 26047339656.299088
[2025-06-04 07:04:24] 2025-06-04 02:03:20,829 | INFO     | chi2: 0.27440129909994604
[2025-06-04 07:04:24] 2025-06-04 02:03:20,829 | INFO     | -- intersect: 26047339656.299088
[2025-06-04 07:04:24] 2025-06-04 02:03:20,829 | INFO     | current memory leak: -14.89 B/s (using 287 data points, chi2=0.27)
[2025-06-04 07:04:24] 2025-06-04 02:03:20,830 | INFO     | ..............................
[2025-06-04 07:04:24] 2025-06-04 02:03:20,830 | INFO     | . Timing measurements:
[2025-06-04 07:04:24] 2025-06-04 02:03:20,831 | INFO     | . get job = 0 s
[2025-06-04 07:04:24] 2025-06-04 02:03:20,831 | INFO     | . initial setup = 11 s
[2025-06-04 07:04:24] 2025-06-04 02:03:20,831 | INFO     | . payload setup = 149 s
[2025-06-04 07:04:24] 2025-06-04 02:03:20,831 | INFO     | . stage-in = 0 s
[2025-06-04 07:04:24] 2025-06-04 02:03:20,831 | INFO     | . payload execution = 19413 s
[2025-06-04 07:04:24] 2025-06-04 02:03:20,831 | INFO     | . stage-out = 3 s
[2025-06-04 07:04:24] 2025-06-04 02:03:20,831 | INFO     | . log creation = 1 s
[2025-06-04 07:04:24] 2025-06-04 02:03:20,831 | INFO     | ..............................
[2025-06-04 07:04:24] 2025-06-04 02:03:21,001 | INFO     | 
[2025-06-04 07:04:24] 2025-06-04 02:03:21,001 | INFO     | job summary report
[2025-06-04 07:04:24] 2025-06-04 02:03:21,002 | INFO     | --------------------------------------------------
[2025-06-04 07:04:24] 2025-06-04 02:03:21,002 | INFO     | PanDA job id: 6668233319
[2025-06-04 07:04:24] 2025-06-04 02:03:21,002 | INFO     | task id: 44871837
[2025-06-04 07:04:24] 2025-06-04 02:03:21,002 | INFO     | errors: (none)
[2025-06-04 07:04:24] 2025-06-04 02:03:21,002 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:04:24] 2025-06-04 02:03:21,002 | INFO     | pilot state: finished 
[2025-06-04 07:04:24] 2025-06-04 02:03:21,002 | INFO     | transexitcode: 0
[2025-06-04 07:04:24] 2025-06-04 02:03:21,002 | INFO     | exeerrorcode: 0
[2025-06-04 07:04:24] 2025-06-04 02:03:21,002 | INFO     | exeerrordiag: 
[2025-06-04 07:04:24] 2025-06-04 02:03:21,002 | INFO     | exitcode: 0
[2025-06-04 07:04:24] 2025-06-04 02:03:21,002 | INFO     | exitmsg: OK
[2025-06-04 07:04:24] 2025-06-04 02:03:21,003 | INFO     | cpuconsumptiontime: 73551 s
[2025-06-04 07:04:24] 2025-06-04 02:03:21,003 | INFO     | nevents: 400
[2025-06-04 07:04:24] 2025-06-04 02:03:21,003 | INFO     | neventsw: 0
[2025-06-04 07:04:24] 2025-06-04 02:03:21,003 | INFO     | pid: 11437
[2025-06-04 07:04:24] 2025-06-04 02:03:21,003 | INFO     | pgrp: 11437
[2025-06-04 07:04:24] 2025-06-04 02:03:21,003 | INFO     | corecount: 8
[2025-06-04 07:04:24] 2025-06-04 02:03:21,003 | INFO     | event service: False
[2025-06-04 07:04:24] 2025-06-04 02:03:21,003 | INFO     | sizes: {0: 2405063, 1: 2405262, 12: 2405262, 22: 2405290, 33: 2405318, 44: 2405374, 55: 2405530, 65: 2405558, 76: 2405586, 87: 2405642, 93: 2405876, 97: 2406184, 1
[2025-06-04 07:04:24] 2025-06-04 02:03:21,003 | INFO     | --------------------------------------------------
[2025-06-04 07:04:24] 2025-06-04 02:03:21,004 | INFO     | 
[2025-06-04 07:04:24] 2025-06-04 02:03:21,010 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-04 07:04:24] 2025-06-04 02:03:21,550 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,551 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,551 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,551 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,551 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,551 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,551 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,551 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,551 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,552 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,552 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,552 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,552 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,552 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:04:24] 2025-06-04 02:03:21,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,553 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:04:24] 2025-06-04 02:03:21,553 | INFO     | job 6668233319 has completed (purged errors)
[2025-06-04 07:04:24] 2025-06-04 02:03:21,553 | INFO     | overall cleanup function is called
[2025-06-04 07:04:24] 2025-06-04 02:03:22,562 | INFO     | --- collectZombieJob: --- 10, [11437]
[2025-06-04 07:04:24] 2025-06-04 02:03:22,562 | INFO     | zombie collector waiting for pid 11437
[2025-06-04 07:04:24] 2025-06-04 02:03:22,562 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:04:24] 2025-06-04 02:03:22,562 | INFO     | collected zombie processes
[2025-06-04 07:04:24] 2025-06-04 02:03:22,562 | INFO     | will attempt to kill all subprocesses of pid=11437
[2025-06-04 07:04:24] 2025-06-04 02:03:22,707 | INFO     | process IDs to be killed: [11437] (in reverse order)
[2025-06-04 07:04:24] 2025-06-04 02:03:23,532 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:04:24] 2025-06-04 02:03:23,532 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:04:24] 2025-06-04 02:03:23,536 | INFO     | did not find any defunct processes belonging to 11437
[2025-06-04 07:04:24] 2025-06-04 02:03:23,539 | INFO     | did not find any defunct processes belonging to 11437
[2025-06-04 07:04:24] 2025-06-04 02:03:23,539 | INFO     | ready for new job
[2025-06-04 07:04:24] 2025-06-04 02:03:23,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:04:24] 2025-06-04 02:03:23,541 | INFO     | **************************************
[2025-06-04 07:04:24] 2025-06-04 02:03:23,541 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:04:24] 2025-06-04 02:03:23,541 | INFO     | **************************************
[2025-06-04 07:04:24] 2025-06-04 02:03:23,541 | INFO     | 
[2025-06-04 07:04:24] 2025-06-04 02:03:23,550 | INFO     | pilot is running in a VM
[2025-06-04 07:04:24] 2025-06-04 02:03:23,550 | INFO     | architecture information:
[2025-06-04 07:04:24] 2025-06-04 02:03:23,561 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:04:24] 2025-06-04 02:03:23,873 | INFO     | cat /etc/os-release:
[2025-06-04 07:04:24] NAME="CentOS Linux"
[2025-06-04 07:04:24] VERSION="7 (Core)"
[2025-06-04 07:04:24] ID="centos"
[2025-06-04 07:04:24] ID_LIKE="rhel fedora"
[2025-06-04 07:04:24] VERSION_ID="7"
[2025-06-04 07:04:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:04:24] ANSI_COLOR="0;31"
[2025-06-04 07:04:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:04:24] HOME_URL="https://www.centos.org/"
[2025-06-04 07:04:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:04:24] 
[2025-06-04 07:04:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:04:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:04:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:04:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:04:24] 
[2025-06-04 07:04:24] 2025-06-04 02:03:23,873 | INFO     | **************************************
[2025-06-04 07:04:24] 2025-06-04 02:03:24,378 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-04 07:04:24] 2025-06-04 02:03:24,642 | INFO     | sufficient remaining disk space (496852008960 B)
[2025-06-04 07:04:24] 2025-06-04 02:03:24,643 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:04:24] 2025-06-04 02:03:24,643 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:04:24] 2025-06-04 02:03:24,643 | INFO     | update_server=False
[2025-06-04 07:04:24] 2025-06-04 02:03:24,643 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:04:24] 2025-06-04 02:03:24,644 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:04:24] 2025-06-04 02:03:24,645 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 07:04:24] 2025-06-04 02:03:24,645 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:04:24] 2025-06-04 02:03:24,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:04:24] 2025-06-04 02:03:24,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:04:24] 2025-06-04 02:03:24,818 | INFO     | all data control threads have been joined
[2025-06-04 07:04:24] 2025-06-04 02:03:25,442 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:04:24] 2025-06-04 02:03:25,442 | INFO     | aborting loop
[2025-06-04 07:04:24] 2025-06-04 02:03:25,649 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:25,689 | INFO     | all payload control threads have been joined
[2025-06-04 07:04:24] 2025-06-04 02:03:25,763 | INFO     | all job control threads have been joined
[2025-06-04 07:04:24] 2025-06-04 02:03:25,794 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:25,824 | INFO     | [data] control thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:25,871 | INFO     | [job] validate thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:26,002 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:26,016 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:04:24] 2025-06-04 02:03:26,038 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:26,448 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:26,651 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:26,695 | INFO     | [payload] control thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:26,769 | INFO     | [job] control thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:26,847 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:27,021 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:27,036 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:27,095 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:27,223 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:27,532 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:04:24] 2025-06-04 02:03:31,541 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:04:24] 2025-06-04 02:03:33,271 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140088259397440)>', '<ExcThread(monitor, started 140087555757824)>']
[2025-06-04 07:04:24] 2025-06-04 02:03:33,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:04:24] 2025-06-04 02:03:33,700 | INFO     | [monitor] control thread has ended
[2025-06-04 07:04:24] 2025-06-04 02:03:38,297 | INFO     | all workflow threads have been joined
[2025-06-04 07:04:24] 2025-06-04 02:03:38,297 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:04:24] 2025-06-04 02:03:38,297 | INFO     | traces error code: 0
[2025-06-04 07:04:24] 2025-06-04 02:03:38,298 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:04:24] 2025-06-04 02:03:38,759 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:04:24] 2025-06-04 02:03:38,888 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:04:24] 2025-06-04 02:03:38,984 [wrapper] pilotpid: 2790
[2025-06-04 07:04:24] 2025-06-04 02:03:39,080 [wrapper] Pilot exit status: 0
[2025-06-04 07:04:24] 2025-06-04 02:03:39,487 [wrapper] pandaids: 6668233319
[2025-06-04 07:04:24] 2025-06-04 02:03:40,371 [wrapper] cleanup supervisor_pilot 27360 2791
[2025-06-04 07:04:24] 2025-06-04 02:03:40,480 [wrapper] Test setup, not cleaning
[2025-06-04 07:04:24] 2025-06-04 02:03:40,533 [wrapper] apfmon messages muted
[2025-06-04 07:04:24] 2025-06-04 02:03:40,646 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:04:24] 2025-06-04 02:03:40,763 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:04:24]  *** Error codes and diagnostics ***
[2025-06-04 07:04:24]     "exeErrorCode": 0,
[2025-06-04 07:04:24]     "exeErrorDiag": "",
[2025-06-04 07:04:24]     "pilotErrorCode": 0,
[2025-06-04 07:04:24]     "pilotErrorDiag": "",
[2025-06-04 07:04:24]  *** Listing of results directory ***
[2025-06-04 07:04:24] total 421620
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc    495897 May 28 10:16 pilot3.tar.gz
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc      5111 May 28 10:50 queuedata.json
[2025-06-04 07:04:24] -rwx------. 1 boinc boinc     37140 May 28 10:51 runpilot2-wrapper.sh
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc       100 Jun  3 22:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:04:24] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 22:31 run_atlas
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc       105 Jun  3 22:31 job.xml
[2025-06-04 07:04:24] -rw-r--r--. 2 boinc boinc 223956627 Jun  3 22:31 EVNT.44871834._003188.pool.root.1
[2025-06-04 07:04:24] -rw-r--r--. 2 boinc boinc     15093 Jun  3 22:31 start_atlas.sh
[2025-06-04 07:04:24] drwxrwx--x. 2 boinc boinc        68 Jun  3 22:31 shared
[2025-06-04 07:04:24] -rw-r--r--. 2 boinc boinc    508881 Jun  3 22:31 input.tar.gz
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc      6392 Jun  3 22:31 init_data.xml
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc         0 Jun  3 22:31 boinc_lockfile
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc      2559 Jun  3 22:31 pandaJob.out
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc    986853 Jun  3 22:32 agis_schedconf.cvmfs.json
[2025-06-04 07:04:24] drwx------. 4 boinc boinc      4096 Jun  3 22:32 pilot3
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc 199714934 Jun  4 04:00 HITS.44871837._081652.pool.root.1
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc       531 Jun  4 04:00 boinc_task_state.xml
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc      1019 Jun  4 04:01 memory_monitor_summary.json
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc   1603667 Jun  4 04:01 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc    444471 Jun  4 04:01 log.44871837._081652.job.log.tgz.1
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc        95 Jun  4 04:02 pilot_heartbeat.json
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc      7697 Jun  4 04:03 heartbeat.json
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc      4539 Jun  4 04:03 pilotlog.txt
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc   1680278 Jun  4 04:03 log.44871837._081652.job.log.1
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc       357 Jun  4 04:03 output.list
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc       620 Jun  4 04:03 runtime_log
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc   2140160 Jun  4 04:03 result.tar.gz
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc       657 Jun  4 04:03 7KaLDmzgRe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeibKDm1SsYZn.diag
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc      8659 Jun  4 04:03 runtime_log.err
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc      8192 Jun  4 07:04 boinc_mmap_file
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc        28 Jun  4 07:04 wrapper_checkpoint.txt
[2025-06-04 07:04:24] -rw-r--r--. 1 boinc boinc     20507 Jun  4 07:04 stderr.txt
[2025-06-04 07:04:24] HITS file was successfully produced:
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc 199714934 Jun  4 04:00 shared/HITS.pool.root.1
[2025-06-04 07:04:24]  *** Contents of shared directory: ***
[2025-06-04 07:04:24] total 416352
[2025-06-04 07:04:24] -rw-r--r--. 2 boinc boinc 223956627 Jun  3 22:31 ATLAS.root_0
[2025-06-04 07:04:24] -rw-r--r--. 2 boinc boinc     15093 Jun  3 22:31 start_atlas.sh
[2025-06-04 07:04:24] -rw-r--r--. 2 boinc boinc    508881 Jun  3 22:31 input.tar.gz
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc 199714934 Jun  4 04:00 HITS.pool.root.1
[2025-06-04 07:04:24] -rw-------. 1 boinc boinc   2140160 Jun  4 04:03 result.tar.gz
07:04:26 (29972): run_atlas exited; CPU time 73817.240643
07:04:26 (29972): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN