Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:40:41 (26802): wrapper (7.7.26015): starting
07:40:41 (26802): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 07:40:41] Arguments: --nthreads 8
[2025-06-03 07:40:41] Threads: 8
[2025-06-03 07:40:41] Checking for CVMFS
[2025-06-03 07:40:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 07:40:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 07:40:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 07:40:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 07:40:42] 2.11.2.0 2913 34147 72380 146741 1 56 14268908 20275201 1 130560 0 10116181 99.974 5885321 7373 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 07:40:42] CVMFS is ok
[2025-06-03 07:40:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 07:40:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 07:40:42] Further information can be found at the LHC@home message board.
[2025-06-03 07:40:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 07:40:42] Checking for apptainer binary...
[2025-06-03 07:40:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 07:40:42] Running /usr/bin/apptainer --version
[2025-06-03 07:40:42] apptainer version 1.3.2-1.el7
[2025-06-03 07:40:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:40:43] c-115-3.aglt2.org
[2025-06-03 07:40:43] apptainer works
[2025-06-03 07:40:43] Set ATHENA_PROC_NUMBER=8
[2025-06-03 07:40:43] Set ATHENA_CORE_NUMBER=8
[2025-06-03 07:40:43] Starting ATLAS job with PandaID=6677546788
[2025-06-03 07:40:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 09:21:17]  *** The last 200 lines of the pilot log: ***
[2025-06-03 09:21:17] 2025-06-03 13:20:34,800 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 09:21:17] 2025-06-03 13:20:34,800 | INFO     | summary of transferred files:
[2025-06-03 09:21:17] 2025-06-03 13:20:34,800 | INFO     |  -- lfn=log.45006595._025891.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 09:21:17] 2025-06-03 13:20:34,801 | INFO     | stage-out finished correctly
[2025-06-03 09:21:17] 2025-06-03 13:20:35,866 | WARNING  | process 4629 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 09:21:17] 2025-06-03 13:20:35,866 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677546788/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 09:21:17] 2025-06-03 13:20:35,867 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677546788/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 09:21:17] 2025-06-03 13:20:35,868 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3737494 B
[2025-06-03 09:21:17] 2025-06-03 13:20:35,868 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15548 B
[2025-06-03 09:21:17] 2025-06-03 13:20:35,868 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 09:21:17] 2025-06-03 13:20:35,888 | INFO     | sufficient remaining disk space (18646827008 B)
[2025-06-03 09:21:17] 2025-06-03 13:20:35,889 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-03 09:21:17] 2025-06-03 13:20:35,890 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6677546788: 4045672 B (within 2537553920 B limit)
[2025-06-03 09:21:17] 2025-06-03 13:20:35,890 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6677546788/HITS.45006595._025891.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-03 09:21:17] 2025-06-03 13:20:35,891 | INFO     | total size of present files: 0 B (workdir size: 4045672 B)
[2025-06-03 09:21:17] 2025-06-03 13:20:35,891 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6677546788/HITS.45006595._025891.pool.root.1 since it does not exist
[2025-06-03 09:21:17] 2025-06-03 13:20:35,972 | INFO     | number of running child processes to parent process 4629: 1
[2025-06-03 09:21:17] 2025-06-03 13:20:35,972 | INFO     | maximum number of monitored processes: 6
[2025-06-03 09:21:17] 2025-06-03 13:20:37,035 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 09:21:17] 2025-06-03 13:20:37,987 | INFO     | job 6677546788 has state=finished
[2025-06-03 09:21:17] 2025-06-03 13:20:37,988 | INFO     | preparing for final server update for job 6677546788 in state='finished'
[2025-06-03 09:21:17] 2025-06-03 13:20:38,063 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-03 09:21:17] 2025-06-03 13:20:38,063 | INFO     | this job has now completed (state=finished)
[2025-06-03 09:21:17] 2025-06-03 13:20:38,063 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 09:21:17] 2025-06-03 13:20:38,064 | INFO     | log transfer has been attempted: DONE
[2025-06-03 09:21:17] 2025-06-03 13:20:38,064 | INFO     | job 6677546788 has finished - writing final server update
[2025-06-03 09:21:17] 2025-06-03 13:20:38,064 | INFO     | total number of processed events: 400 (read)
[2025-06-03 09:21:17] 2025-06-03 13:20:38,065 | INFO     | executing command: lscpu
[2025-06-03 09:21:17] 2025-06-03 13:20:38,092 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 09:21:17] 2025-06-03 13:20:38,476 | INFO     | monitor loop #442: job 0:6677546788 is in state 'finished'
[2025-06-03 09:21:17] 2025-06-03 13:20:38,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 09:21:17] 2025-06-03 13:20:40,980 | INFO     | monitor loop #443: job 0:6677546788 is in state 'finished'
[2025-06-03 09:21:17] 2025-06-03 13:20:40,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 09:21:17] 2025-06-03 13:20:43,483 | INFO     | monitor loop #444: job 0:6677546788 is in state 'finished'
[2025-06-03 09:21:17] 2025-06-03 13:20:43,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 09:21:17] 2025-06-03 13:20:44,026 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-03 09:21:17] 2025-06-03 13:20:44,030 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-06-03 09:21:17] 2025-06-03 13:20:44,032 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677546788/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 09:21:17] 2025-06-03 13:20:44,033 | INFO     | extracted standard info from prmon json
[2025-06-03 09:21:17] 2025-06-03 13:20:44,033 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 09:21:17] 2025-06-03 13:20:44,033 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 09:21:17] 2025-06-03 13:20:44,033 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 09:21:17] 2025-06-03 13:20:44,033 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 09:21:17] 2025-06-03 13:20:44,035 | INFO     | fitting pss+swap vs Time
[2025-06-03 09:21:17] 2025-06-03 13:20:44,036 | INFO     | sum of square deviations: 233641590.0
[2025-06-03 09:21:17] 2025-06-03 13:20:44,036 | INFO     | sum of deviations: -12864004519.999998
[2025-06-03 09:21:17] 2025-06-03 13:20:44,036 | INFO     | mean x: 1748953942.0
[2025-06-03 09:21:17] 2025-06-03 13:20:44,036 | INFO     | mean y: 2568664.791208791
[2025-06-03 09:21:17] 2025-06-03 13:20:44,036 | INFO     | -- intersect: 96297716353.00809
[2025-06-03 09:21:17] 2025-06-03 13:20:44,037 | INFO     | intersect: 96297716353.00809
[2025-06-03 09:21:17] 2025-06-03 13:20:44,037 | INFO     | chi2: 0.10232606846218231
[2025-06-03 09:21:17] 2025-06-03 13:20:44,037 | INFO     | -- intersect: 96297716353.00809
[2025-06-03 09:21:17] 2025-06-03 13:20:44,037 | INFO     | current memory leak: -55.06 B/s (using 91 data points, chi2=0.10)
[2025-06-03 09:21:17] 2025-06-03 13:20:44,038 | INFO     | could have reported an average CPU frequency of 2088 MHz (7 samples)
[2025-06-03 09:21:17] 2025-06-03 13:20:44,038 | INFO     | ..............................
[2025-06-03 09:21:17] 2025-06-03 13:20:44,038 | INFO     | . Timing measurements:
[2025-06-03 09:21:17] 2025-06-03 13:20:44,038 | INFO     | . get job = 0 s
[2025-06-03 09:21:17] 2025-06-03 13:20:44,038 | INFO     | . initial setup = 2 s
[2025-06-03 09:21:17] 2025-06-03 13:20:44,038 | INFO     | . payload setup = 11 s
[2025-06-03 09:21:17] 2025-06-03 13:20:44,038 | INFO     | . stage-in = 0 s
[2025-06-03 09:21:17] 2025-06-03 13:20:44,039 | INFO     | . payload execution = 5943 s
[2025-06-03 09:21:17] 2025-06-03 13:20:44,039 | INFO     | . stage-out = 0 s
[2025-06-03 09:21:17] 2025-06-03 13:20:44,039 | INFO     | . log creation = 0 s
[2025-06-03 09:21:17] 2025-06-03 13:20:44,039 | INFO     | ..............................
[2025-06-03 09:21:17] 2025-06-03 13:20:44,127 | INFO     | 
[2025-06-03 09:21:17] 2025-06-03 13:20:44,127 | INFO     | job summary report
[2025-06-03 09:21:17] 2025-06-03 13:20:44,128 | INFO     | --------------------------------------------------
[2025-06-03 09:21:17] 2025-06-03 13:20:44,128 | INFO     | PanDA job id: 6677546788
[2025-06-03 09:21:17] 2025-06-03 13:20:44,128 | INFO     | task id: 45006595
[2025-06-03 09:21:17] 2025-06-03 13:20:44,128 | INFO     | errors: (none)
[2025-06-03 09:21:17] 2025-06-03 13:20:44,128 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 09:21:17] 2025-06-03 13:20:44,128 | INFO     | pilot state: finished 
[2025-06-03 09:21:17] 2025-06-03 13:20:44,129 | INFO     | transexitcode: 0
[2025-06-03 09:21:17] 2025-06-03 13:20:44,129 | INFO     | exeerrorcode: 0
[2025-06-03 09:21:17] 2025-06-03 13:20:44,129 | INFO     | exeerrordiag: 
[2025-06-03 09:21:17] 2025-06-03 13:20:44,129 | INFO     | exitcode: 0
[2025-06-03 09:21:17] 2025-06-03 13:20:44,129 | INFO     | exitmsg: OK
[2025-06-03 09:21:17] 2025-06-03 13:20:44,130 | INFO     | cpuconsumptiontime: 44003 s
[2025-06-03 09:21:17] 2025-06-03 13:20:44,130 | INFO     | nevents: 400
[2025-06-03 09:21:17] 2025-06-03 13:20:44,130 | INFO     | neventsw: 0
[2025-06-03 09:21:17] 2025-06-03 13:20:44,130 | INFO     | pid: 4629
[2025-06-03 09:21:17] 2025-06-03 13:20:44,130 | INFO     | pgrp: 4629
[2025-06-03 09:21:17] 2025-06-03 13:20:44,130 | INFO     | corecount: 8
[2025-06-03 09:21:17] 2025-06-03 13:20:44,131 | INFO     | event service: False
[2025-06-03 09:21:17] 2025-06-03 13:20:44,131 | INFO     | sizes: {0: 2405354, 1: 2405553, 6: 2405815, 11: 2405843, 5958: 2432566, 5959: 2441507, 5961: 2441719, 5968: 2441913}
[2025-06-03 09:21:17] 2025-06-03 13:20:44,131 | INFO     | --------------------------------------------------
[2025-06-03 09:21:17] 2025-06-03 13:20:44,131 | INFO     | 
[2025-06-03 09:21:17] 2025-06-03 13:20:44,131 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 09:21:17] 2025-06-03 13:20:44,158 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,159 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,159 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,159 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,160 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,160 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,160 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,160 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,160 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,160 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,161 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,161 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,161 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,161 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,161 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,162 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,162 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,162 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 09:21:17] 2025-06-03 13:20:44,162 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,163 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 09:21:17] 2025-06-03 13:20:44,163 | INFO     | job 6677546788 has completed (purged errors)
[2025-06-03 09:21:17] 2025-06-03 13:20:44,163 | INFO     | overall cleanup function is called
[2025-06-03 09:21:17] 2025-06-03 13:20:45,171 | INFO     | --- collectZombieJob: --- 10, [4629]
[2025-06-03 09:21:17] 2025-06-03 13:20:45,171 | INFO     | zombie collector waiting for pid 4629
[2025-06-03 09:21:17] 2025-06-03 13:20:45,173 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 09:21:17] 2025-06-03 13:20:45,173 | INFO     | collected zombie processes
[2025-06-03 09:21:17] 2025-06-03 13:20:45,173 | INFO     | will attempt to kill all subprocesses of pid=4629
[2025-06-03 09:21:17] 2025-06-03 13:20:45,253 | INFO     | process IDs to be killed: [4629] (in reverse order)
[2025-06-03 09:21:17] 2025-06-03 13:20:45,312 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 09:21:17] 2025-06-03 13:20:45,312 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 09:21:17] 2025-06-03 13:20:45,316 | INFO     | did not find any defunct processes belonging to 4629
[2025-06-03 09:21:17] 2025-06-03 13:20:45,319 | INFO     | did not find any defunct processes belonging to 4629
[2025-06-03 09:21:17] 2025-06-03 13:20:45,319 | INFO     | ready for new job
[2025-06-03 09:21:17] 2025-06-03 13:20:45,320 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 09:21:17] 2025-06-03 13:20:45,321 | INFO     | ***************************************
[2025-06-03 09:21:17] 2025-06-03 13:20:45,322 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-03 09:21:17] 2025-06-03 13:20:45,322 | INFO     | ***************************************
[2025-06-03 09:21:17] 2025-06-03 13:20:45,322 | INFO     | 
[2025-06-03 09:21:17] 2025-06-03 13:20:45,323 | INFO     | architecture information:
[2025-06-03 09:21:17] 2025-06-03 13:20:45,323 | INFO     | executing command: cat /etc/os-release
[2025-06-03 09:21:17] 2025-06-03 13:20:45,341 | INFO     | cat /etc/os-release:
[2025-06-03 09:21:17] NAME="CentOS Linux"
[2025-06-03 09:21:17] VERSION="7 (Core)"
[2025-06-03 09:21:17] ID="centos"
[2025-06-03 09:21:17] ID_LIKE="rhel fedora"
[2025-06-03 09:21:17] VERSION_ID="7"
[2025-06-03 09:21:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 09:21:17] ANSI_COLOR="0;31"
[2025-06-03 09:21:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 09:21:17] HOME_URL="https://www.centos.org/"
[2025-06-03 09:21:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 09:21:17] 
[2025-06-03 09:21:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 09:21:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 09:21:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 09:21:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 09:21:17] 
[2025-06-03 09:21:17] 2025-06-03 13:20:45,341 | INFO     | ***************************************
[2025-06-03 09:21:17] 2025-06-03 13:20:45,845 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 09:21:17] 2025-06-03 13:20:45,866 | INFO     | sufficient remaining disk space (18652069888 B)
[2025-06-03 09:21:17] 2025-06-03 13:20:45,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 09:21:17] 2025-06-03 13:20:45,866 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 09:21:17] 2025-06-03 13:20:45,866 | INFO     | update_server=False
[2025-06-03 09:21:17] 2025-06-03 13:20:45,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 09:21:17] 2025-06-03 13:20:45,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:21:17] 2025-06-03 13:20:45,868 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 09:21:17] 2025-06-03 13:20:45,965 | INFO     | all job control threads have been joined
[2025-06-03 09:21:17] 2025-06-03 13:20:45,987 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 09:21:17] 2025-06-03 13:20:45,987 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 09:21:17] 2025-06-03 13:20:45,987 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:21:17] 2025-06-03 13:20:45,987 | INFO     | will abort loop
[2025-06-03 09:21:17] 2025-06-03 13:20:46,480 | INFO     | all payload control threads have been joined
[2025-06-03 09:21:17] 2025-06-03 13:20:46,849 | INFO     | all data control threads have been joined
[2025-06-03 09:21:17] 2025-06-03 13:20:46,872 | INFO     | [job] retrieve thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:46,873 | INFO     | [job] queue monitor thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:46,971 | INFO     | [job] control thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:46,992 | INFO     | [job] job monitor thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:47,130 | INFO     | [payload] failed_post thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:47,485 | INFO     | [payload] control thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:47,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 09:21:17] 2025-06-03 13:20:47,718 | INFO     | [payload] validate_post thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:47,854 | INFO     | [data] control thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:47,872 | INFO     | [data] copytool_out thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:47,880 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:47,888 | INFO     | [job] validate thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:47,897 | INFO     | [data] copytool_in thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:48,080 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:48,170 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:51,640 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:56,825 | INFO     | job.realtimelogging is not enabled
[2025-06-03 09:21:17] 2025-06-03 13:20:57,831 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 09:21:17] 2025-06-03 13:20:58,434 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140710250645312)>', '<ExcThread(monitor, started 140709344560896)>']
[2025-06-03 09:21:17] 2025-06-03 13:21:03,459 | INFO     | all workflow threads have been joined
[2025-06-03 09:21:17] 2025-06-03 13:21:03,463 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 09:21:17] 2025-06-03 13:21:03,463 | INFO     | traces error code: 0
[2025-06-03 09:21:17] 2025-06-03 13:21:03,464 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 09:21:17] 2025-06-03 13:21:16,709 | INFO     | PID=30461 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 09:21:17] 2025-06-03 13:21:16,710 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 09:21:17] 2025-06-03 13:21:16,710 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 09:21:17] 2025-06-03 13:21:16,710 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 09:21:17] 2025-06-03 13:21:16,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 09:21:17] 2025-06-03 13:21:16,711 | INFO     | [monitor] control thread has ended
[2025-06-03 09:21:17] 2025-06-03 13:21:16,838 [wrapper] ==== pilot stdout END ====
[2025-06-03 09:21:17] 2025-06-03 13:21:16,843 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 09:21:17] 2025-06-03 13:21:16,848 [wrapper] pilotpid: 30461
[2025-06-03 09:21:17] 2025-06-03 13:21:16,852 [wrapper] Pilot exit status: 0
[2025-06-03 09:21:17] 2025-06-03 13:21:16,870 [wrapper] pandaids: 6677546788
[2025-06-03 09:21:17] 2025-06-03 13:21:16,914 [wrapper] cleanup supervisor_pilot 31731 30462
[2025-06-03 09:21:17] 2025-06-03 13:21:16,920 [wrapper] Test setup, not cleaning
[2025-06-03 09:21:17] 2025-06-03 13:21:16,925 [wrapper] apfmon messages muted
[2025-06-03 09:21:17] 2025-06-03 13:21:16,930 [wrapper] ==== wrapper stdout END ====
[2025-06-03 09:21:17] 2025-06-03 13:21:16,934 [wrapper] ==== wrapper stderr END ====
[2025-06-03 09:21:17]  *** Error codes and diagnostics ***
[2025-06-03 09:21:17]     "exeErrorCode": 0,
[2025-06-03 09:21:17]     "exeErrorDiag": "",
[2025-06-03 09:21:17]     "pilotErrorCode": 0,
[2025-06-03 09:21:17]     "pilotErrorDiag": "",
[2025-06-03 09:21:17]  *** Listing of results directory ***
[2025-06-03 09:21:17] total 381944
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas    549845 Jun  2 05:40 pilot3.tar.gz
[2025-06-03 09:21:17] -rwx------ 1 boincer umatlas     37140 Jun  3 04:47 runpilot2-wrapper.sh
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 04:47 queuedata.json
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas       100 Jun  3 07:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 09:21:17] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 07:40 run_atlas
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas       105 Jun  3 07:40 job.xml
[2025-06-03 09:21:17] -rw-r--r-- 2 boincer umatlas 213744469 Jun  3 07:40 EVNT.45006593._001035.pool.root.1
[2025-06-03 09:21:17] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 07:40 start_atlas.sh
[2025-06-03 09:21:17] drwxrwx--x 2 boincer umatlas      4096 Jun  3 07:40 shared
[2025-06-03 09:21:17] -rw-r--r-- 2 boincer umatlas    564107 Jun  3 07:40 input.tar.gz
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas         0 Jun  3 07:40 boinc_lockfile
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 07:40 pandaJob.out
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas    982666 Jun  3 07:40 agis_schedconf.cvmfs.json
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas   1603667 Jun  3 07:40 agis_ddmendpoints.agis.ALL.json
[2025-06-03 09:21:17] drwx------ 6 boincer umatlas      4096 Jun  3 07:40 pilot3
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas      5824 Jun  3 09:18 init_data.xml
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas 171643522 Jun  3 09:20 HITS.45006595._025891.pool.root.1
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas        95 Jun  3 09:20 pilot_heartbeat.json
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas       529 Jun  3 09:20 boinc_task_state.xml
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas      1049 Jun  3 09:20 memory_monitor_summary.json
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas    332041 Jun  3 09:20 log.45006595._025891.job.log.tgz.1
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas        27 Jun  3 09:20 wrapper_checkpoint.txt
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 09:20 boinc_mmap_file
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas      7773 Jun  3 09:20 heartbeat.json
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas       745 Jun  3 09:21 pilotlog.txt
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas    561592 Jun  3 09:21 log.45006595._025891.job.log.1
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas       357 Jun  3 09:21 output.list
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas       620 Jun  3 09:21 runtime_log
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas    911360 Jun  3 09:21 result.tar.gz
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas       657 Jun  3 09:21 xsWKDmOUcg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmC0iKDmlPLLYo.diag
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas      8654 Jun  3 09:21 runtime_log.err
[2025-06-03 09:21:17] -rw-r--r-- 1 boincer umatlas     22424 Jun  3 09:21 stderr.txt
[2025-06-03 09:21:17] HITS file was successfully produced:
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas 171643522 Jun  3 09:20 shared/HITS.pool.root.1
[2025-06-03 09:21:17]  *** Contents of shared directory: ***
[2025-06-03 09:21:17] total 377824
[2025-06-03 09:21:17] -rw-r--r-- 2 boincer umatlas 213744469 Jun  3 07:40 ATLAS.root_0
[2025-06-03 09:21:17] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 07:40 start_atlas.sh
[2025-06-03 09:21:17] -rw-r--r-- 2 boincer umatlas    564107 Jun  3 07:40 input.tar.gz
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas 171643522 Jun  3 09:20 HITS.pool.root.1
[2025-06-03 09:21:17] -rw------- 1 boincer umatlas    911360 Jun  3 09:21 result.tar.gz
09:21:18 (26802): run_atlas exited; CPU time 43957.156937
09:21:18 (26802): called boinc_finish(0)

</stderr_txt>
]]>

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