Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:43:23 (4129473): wrapper (7.7.26015): starting
04:43:23 (4129473): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 04:43:23] Arguments: --nthreads 12
[2025-06-03 04:43:23] Threads: 12
[2025-06-03 04:43:23] Checking for CVMFS
[2025-06-03 04:43:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 04:43:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 04:43:23] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 04:43:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 04:43:24] 2.11.5.0 2907452 22390 257656 146741 2 1048 36946896 45568000 12086 130560 0 286295889 99.852 140674782 28307 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-06-03 04:43:24] CVMFS is ok
[2025-06-03 04:43:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 04:43:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 04:43:24] Further information can be found at the LHC@home message board.
[2025-06-03 04:43:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 04:43:24] Checking for apptainer binary...
[2025-06-03 04:43:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 04:43:24] Running /usr/bin/apptainer --version
[2025-06-03 04:43:24] apptainer version 1.4.0-1.el9
[2025-06-03 04:43:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 04:43:24] wns0082.triumf.lcg
[2025-06-03 04:43:24] apptainer works
[2025-06-03 04:43:24] Set ATHENA_PROC_NUMBER=12
[2025-06-03 04:43:24] Set ATHENA_CORE_NUMBER=12
[2025-06-03 04:43:24] Starting ATLAS job with PandaID=6677576445
[2025-06-03 04:43:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 04:46:25]  *** The last 200 lines of the pilot log: ***
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | found no stored workdir sizes
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | WARNING  | wrong length of table data, x=[1748951035.0], y=[1698.0] (must be same and length>=4)
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | ..............................
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . Timing measurements:
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . get job = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . initial setup = 2 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . payload setup = 4 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . stage-in = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . payload execution = 15 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . stage-out = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . log creation = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | ..............................
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 04:46:25] 2025-06-03 11:46:11,936 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677576445/pilotlog.txt
[2025-06-03 04:46:25] 2025-06-03 11:46:11,946 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-03 04:46:25] - Log from pilotlog.txt -
[2025-06-03 04:46:25] 2025-06-03 11:46:11,933 | INFO     | extracted standard info from prmon json
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | found no stored workdir sizes
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | WARNING  | wrong length of table data, x=[1748951035.0], y=[1698.0] (must be same and length>=4)
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | ..............................
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . Timing measurements:
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . get job = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . initial setup = 2 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . payload setup = 4 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . stage-in = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . payload execution = 15 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . stage-out = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . log creation = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | ..............................
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 04:46:25] 2025-06-03 11:46:11,936 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677576445/pilotlog.txt
[2025-06-03 04:46:25] 2025-06-03 11:46:11,946 | WARNING  | 
[2025-06-03 04:46:25] [begin log extracts]
[2025-06-03 04:46:25] - Log from pilotlog.txt -
[2025-06-03 04:46:25] 2025-06-03 11:46:11,933 | INFO     | extracted standard info from prmon json
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | WARNING  | found no stored workdir sizes
[2025-06-03 04:46:25] 2025-06-03 11:46:11,934 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | WARNING  | wrong length of table data, x=[1748951035.0], y=[1698.0] (must be same and length>=4)
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | ..............................
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . Timing measurements:
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . get job = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . initial setup = 2 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . payload setup = 4 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . stage-in = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . payload execution = 15 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . stage-out = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | . log creation = 0 s
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | ..............................
[2025-06-03 04:46:25] 2025-06-03 11:46:11,935 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 04:46:25] 2025-06-03 11:46:11,936 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677576445/pilotlog.txt
[2025-06-03 04:46:25] [end log extracts]
[2025-06-03 04:46:25] 2025-06-03 11:46:11,946 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-03 04:46:25] 2025-06-03 11:46:11,947 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-03 04:46:25] 2025-06-03 11:46:12,474 | INFO     | 
[2025-06-03 04:46:25] 2025-06-03 11:46:12,474 | INFO     | job summary report
[2025-06-03 04:46:25] 2025-06-03 11:46:12,474 | INFO     | --------------------------------------------------
[2025-06-03 04:46:25] 2025-06-03 11:46:12,474 | INFO     | PanDA job id: 6677576445
[2025-06-03 04:46:25] 2025-06-03 11:46:12,474 | INFO     | task id: 45006595
[2025-06-03 04:46:25] 2025-06-03 11:46:12,474 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-03 04:44:02,977 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-03 04:46:25] 2025-06-03 11:46:12,474 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 04:46:25] 2025-06-03 11:46:12,474 | INFO     | pilot state: failed 
[2025-06-03 04:46:25] 2025-06-03 11:46:12,474 | INFO     | transexitcode: 65
[2025-06-03 04:46:25] 2025-06-03 11:46:12,474 | INFO     | exeerrorcode: 65
[2025-06-03 04:46:25] 2025-06-03 11:46:12,474 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | exitcode: 65
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | cpuconsumptiontime: 16 s
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | nevents: 0
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | neventsw: 0
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | pid: 4139570
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | pgrp: 4139570
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | corecount: 12
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | event service: False
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | sizes: {0: 2405181, 4: 2405387, 11: 2405415, 23: 2428648, 25: 2432911, 145: 2433025}
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | --------------------------------------------------
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | 
[2025-06-03 04:46:25] 2025-06-03 11:46:12,475 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,492 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,493 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,493 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,493 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,493 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 04:46:25] 2025-06-03 11:46:12,493 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,493 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 04:46:25] 2025-06-03 11:46:12,493 | INFO     | job 6677576445 has completed (purged errors)
[2025-06-03 04:46:25] 2025-06-03 11:46:12,493 | INFO     | overall cleanup function is called
[2025-06-03 04:46:25] 2025-06-03 11:46:13,499 | INFO     | --- collectZombieJob: --- 10, [4139570]
[2025-06-03 04:46:25] 2025-06-03 11:46:13,499 | INFO     | zombie collector waiting for pid 4139570
[2025-06-03 04:46:25] 2025-06-03 11:46:13,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 04:46:25] 2025-06-03 11:46:13,499 | INFO     | collected zombie processes
[2025-06-03 04:46:25] 2025-06-03 11:46:13,499 | INFO     | will attempt to kill all subprocesses of pid=4139570
[2025-06-03 04:46:25] 2025-06-03 11:46:13,776 | INFO     | process IDs to be killed: [4139570] (in reverse order)
[2025-06-03 04:46:25] 2025-06-03 11:46:13,861 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 04:46:25] 2025-06-03 11:46:13,862 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 04:46:25] 2025-06-03 11:46:13,871 | INFO     | did not find any defunct processes belonging to 4139570
[2025-06-03 04:46:25] 2025-06-03 11:46:13,886 | INFO     | did not find any defunct processes belonging to 4139570
[2025-06-03 04:46:25] 2025-06-03 11:46:13,886 | INFO     | ready for new job
[2025-06-03 04:46:25] 2025-06-03 11:46:13,886 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 04:46:25] 2025-06-03 11:46:13,887 | INFO     | **************************************
[2025-06-03 04:46:25] 2025-06-03 11:46:13,887 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 04:46:25] 2025-06-03 11:46:13,888 | INFO     | **************************************
[2025-06-03 04:46:25] 2025-06-03 11:46:13,888 | INFO     | 
[2025-06-03 04:46:25] 2025-06-03 11:46:13,889 | INFO     | architecture information:
[2025-06-03 04:46:25] 2025-06-03 11:46:13,890 | INFO     | executing command: cat /etc/os-release
[2025-06-03 04:46:25] 2025-06-03 11:46:13,905 | INFO     | cat /etc/os-release:
[2025-06-03 04:46:25] NAME="CentOS Linux"
[2025-06-03 04:46:25] VERSION="7 (Core)"
[2025-06-03 04:46:25] ID="centos"
[2025-06-03 04:46:25] ID_LIKE="rhel fedora"
[2025-06-03 04:46:25] VERSION_ID="7"
[2025-06-03 04:46:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 04:46:25] ANSI_COLOR="0;31"
[2025-06-03 04:46:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 04:46:25] HOME_URL="https://www.centos.org/"
[2025-06-03 04:46:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 04:46:25] 
[2025-06-03 04:46:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 04:46:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 04:46:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 04:46:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 04:46:25] 
[2025-06-03 04:46:25] 2025-06-03 11:46:13,905 | INFO     | **************************************
[2025-06-03 04:46:25] 2025-06-03 11:46:14,409 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-03 04:46:25] 2025-06-03 11:46:14,423 | INFO     | sufficient remaining disk space (2036377583616 B)
[2025-06-03 04:46:25] 2025-06-03 11:46:14,424 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 04:46:25] 2025-06-03 11:46:14,424 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 04:46:25] 2025-06-03 11:46:14,424 | INFO     | update_server=False
[2025-06-03 04:46:25] 2025-06-03 11:46:14,424 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 04:46:25] 2025-06-03 11:46:14,424 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 04:46:25] 2025-06-03 11:46:14,424 | INFO     | aborting loop
[2025-06-03 04:46:25] 2025-06-03 11:46:14,424 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 04:46:25] 2025-06-03 11:46:14,425 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 04:46:25] 2025-06-03 11:46:14,425 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 04:46:25] 2025-06-03 11:46:14,425 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 04:46:25] 2025-06-03 11:46:14,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 04:46:25] 2025-06-03 11:46:15,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 04:46:25] 2025-06-03 11:46:15,100 | INFO     | all job control threads have been joined
[2025-06-03 04:46:25] 2025-06-03 11:46:15,342 | INFO     | all data control threads have been joined
[2025-06-03 04:46:25] 2025-06-03 11:46:15,429 | INFO     | [job] retrieve thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:15,429 | INFO     | [job] job monitor thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:15,517 | INFO     | [data] copytool_in thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:15,525 | INFO     | all payload control threads have been joined
[2025-06-03 04:46:25] 2025-06-03 11:46:15,542 | INFO     | [payload] validate_post thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:16,096 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:16,106 | INFO     | [job] control thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:16,348 | INFO     | [data] control thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:16,521 | INFO     | [job] validate thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:16,531 | INFO     | [payload] control thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:16,563 | INFO     | [payload] failed_post thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:16,674 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:16,749 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:16,811 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:17,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 04:46:25] 2025-06-03 11:46:17,053 | INFO     | [data] copytool_out thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:18,026 | INFO     | [job] queue monitor thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:18,988 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 04:46:25] 2025-06-03 11:46:19,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140435839637312)>', '<ExcThread(monitor, started 140435028702976)>']
[2025-06-03 04:46:25] 2025-06-03 11:46:20,463 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 04:46:25] 2025-06-03 11:46:20,464 | INFO     | [monitor] control thread has ended
[2025-06-03 04:46:25] 2025-06-03 11:46:24,785 | INFO     | all workflow threads have been joined
[2025-06-03 04:46:25] 2025-06-03 11:46:24,785 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 04:46:25] 2025-06-03 11:46:24,785 | INFO     | traces error code: 0
[2025-06-03 04:46:25] 2025-06-03 11:46:24,785 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 04:46:25] 2025-06-03 11:46:24,918 [wrapper] ==== pilot stdout END ====
[2025-06-03 04:46:25] 2025-06-03 11:46:24,920 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 04:46:25] 2025-06-03 11:46:24,922 [wrapper] pilotpid: 4133262
[2025-06-03 04:46:25] 2025-06-03 11:46:24,924 [wrapper] Pilot exit status: 0
[2025-06-03 04:46:25] 2025-06-03 11:46:24,935 [wrapper] pandaids: 6677576445
[2025-06-03 04:46:25] 2025-06-03 11:46:24,974 [wrapper] cleanup supervisor_pilot 4133268 4133263
[2025-06-03 04:46:25] 2025-06-03 11:46:24,989 [wrapper] Test setup, not cleaning
[2025-06-03 04:46:25] 2025-06-03 11:46:24,996 [wrapper] apfmon messages muted
[2025-06-03 04:46:25] 2025-06-03 11:46:24,998 [wrapper] ==== wrapper stdout END ====
[2025-06-03 04:46:25] 2025-06-03 11:46:25,000 [wrapper] ==== wrapper stderr END ====
[2025-06-03 04:46:25]  *** Error codes and diagnostics ***
[2025-06-03 04:46:25]     "exeErrorCode": 65,
[2025-06-03 04:46:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 04:46:25]     "pilotErrorCode": 1305,
[2025-06-03 04:46:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 04:46:25]  *** Listing of results directory ***
[2025-06-03 04:46:25] total 215532
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc    495897 Jun  3 02:56 pilot3.tar.gz
[2025-06-03 04:46:25] -rwx------. 1 boinc boinc     37140 Jun  3 03:20 runpilot2-wrapper.sh
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc      5111 Jun  3 03:20 queuedata.json
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc       100 Jun  3 04:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 04:46:25] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 04:43 run_atlas
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc       105 Jun  3 04:43 job.xml
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc      6602 Jun  3 04:43 init_data.xml
[2025-06-03 04:46:25] -rw-r--r--. 2 boinc boinc 216687399 Jun  3 04:43 EVNT.45006593._001149.pool.root.1
[2025-06-03 04:46:25] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:43 start_atlas.sh
[2025-06-03 04:46:25] drwxrwx--x. 2 boinc boinc      4096 Jun  3 04:43 shared
[2025-06-03 04:46:25] -rw-r--r--. 2 boinc boinc    508878 Jun  3 04:43 input.tar.gz
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc         0 Jun  3 04:43 boinc_lockfile
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc      2525 Jun  3 04:43 pandaJob.out
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc    982666 Jun  3 04:43 agis_schedconf.cvmfs.json
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc   1603667 Jun  3 04:43 agis_ddmendpoints.agis.ALL.json
[2025-06-03 04:46:25] drwx------. 4 boinc boinc      4096 Jun  3 04:43 pilot3
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc       521 Jun  3 04:44 boinc_task_state.xml
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc       983 Jun  3 04:44 memory_monitor_summary.json
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc     20478 Jun  3 04:44 log.45006595._028746.job.log.tgz.1
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc        95 Jun  3 04:45 pilot_heartbeat.json
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc      8353 Jun  3 04:46 heartbeat.json
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc      8192 Jun  3 04:46 boinc_mmap_file
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc        22 Jun  3 04:46 wrapper_checkpoint.txt
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc      4475 Jun  3 04:46 pilotlog.txt
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc     72720 Jun  3 04:46 log.45006595._028746.job.log.1
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc       188 Jun  3 04:46 output.list
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc       620 Jun  3 04:46 runtime_log
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc    112640 Jun  3 04:46 result.tar.gz
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc      8484 Jun  3 04:46 runtime_log.err
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc       644 Jun  3 04:46 MTwKDm8vdg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmXIYKDmCjWVPm.diag
[2025-06-03 04:46:25] -rw-r--r--. 1 boinc boinc     21473 Jun  3 04:46 stderr.txt
[2025-06-03 04:46:25] No HITS result produced
[2025-06-03 04:46:25]  *** Contents of shared directory: ***
[2025-06-03 04:46:25] total 212244
[2025-06-03 04:46:25] -rw-r--r--. 2 boinc boinc 216687399 Jun  3 04:43 ATLAS.root_0
[2025-06-03 04:46:25] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:43 start_atlas.sh
[2025-06-03 04:46:25] -rw-r--r--. 2 boinc boinc    508878 Jun  3 04:43 input.tar.gz
[2025-06-03 04:46:25] -rw-------. 1 boinc boinc    112640 Jun  3 04:46 result.tar.gz
04:46:26 (4129473): run_atlas exited; CPU time 19.797616
04:46:26 (4129473): called boinc_finish(0)

</stderr_txt>
]]>

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