Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-03 19:11:29 (1070471): Detected: vboxwrapper 26206
2025-06-03 19:11:29 (1070471): Detected: BOINC client v8.0.2
2025-06-03 19:11:29 (1070471): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-06-03 19:11:29 (1070471): Successfully copied 'init_data.xml' to the shared directory.
2025-06-03 19:11:29 (1070471): Create VM. (boinc_f65c9c2c7293ed7f, slot#1)
2025-06-03 19:11:30 (1070471): Setting Memory Size for VM. (4800MB)
2025-06-03 19:11:30 (1070471): Setting CPU Count for VM. (8)
2025-06-03 19:11:30 (1070471): Setting Chipset Options for VM.
2025-06-03 19:11:30 (1070471): Setting Graphics Controller Options for VM.
2025-06-03 19:11:30 (1070471): Setting Boot Options for VM.
2025-06-03 19:11:30 (1070471): Setting Network Configuration for NAT.
2025-06-03 19:11:31 (1070471): Enabling VM Network Access.
2025-06-03 19:11:31 (1070471): Disabling USB Support for VM.
2025-06-03 19:11:31 (1070471): Disabling COM Port Support for VM.
2025-06-03 19:11:31 (1070471): Disabling LPT Port Support for VM.
2025-06-03 19:11:31 (1070471): Disabling Audio Support for VM.
2025-06-03 19:11:31 (1070471): Disabling Clipboard Support for VM.
2025-06-03 19:11:31 (1070471): Disabling Drag and Drop Support for VM.
2025-06-03 19:11:31 (1070471): Adding storage controller(s) to VM.
2025-06-03 19:11:31 (1070471): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-03 19:11:32 (1070471): Adding VirtualBox Guest Additions to VM.
2025-06-03 19:11:32 (1070471): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-03 19:11:32 (1070471): forwarding host port 57533 to guest port 80
2025-06-03 19:11:32 (1070471): Enabling remote desktop for VM.
2025-06-03 19:11:32 (1070471): Enabling shared directory for VM.
2025-06-03 19:11:32 (1070471): Starting VM using VBoxManage interface. (boinc_f65c9c2c7293ed7f, slot#1)
2025-06-03 19:11:34 (1070471): Successfully started VM. (PID = '1071044')
2025-06-03 19:11:34 (1070471): Reporting VM Process ID to BOINC.
2025-06-03 19:11:34 (1070471): Guest Log: BIOS: VirtualBox 7.0.22
2025-06-03 19:11:34 (1070471): Guest Log: CPUID EDX: 0x178bfbff
2025-06-03 19:11:34 (1070471): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-03 19:11:34 (1070471): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-03 19:11:34 (1070471): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-03 19:11:34 (1070471): Detected: Web Application Enabled (http://localhost:57533)
2025-06-03 19:11:34 (1070471): Detected: Remote Desktop Enabled (localhost:38533)
2025-06-03 19:11:34 (1070471): Preference change detected
2025-06-03 19:11:34 (1070471): Setting CPU throttle for VM. (60%)
2025-06-03 19:11:34 (1070471): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-03 19:11:36 (1070471): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-03 19:11:36 (1070471): Guest Log: BIOS: Booting from Hard Disk...
2025-06-03 19:11:41 (1070471): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-03 19:11:41 (1070471): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-03 19:11:41 (1070471): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-03 19:11:48 (1070471): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-03 19:11:48 (1070471): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-03 19:11:54 (1070471): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-03 19:11:54 (1070471): Guest Log: 00:00:00.000100 main     Log opened 2025-06-03T23:11:52.925330000Z
2025-06-03 19:11:54 (1070471): Guest Log: 00:00:00.000188 main     OS Product: Linux
2025-06-03 19:11:54 (1070471): Guest Log: 00:00:00.000208 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-03 19:11:54 (1070471): Guest Log: 00:00:00.000222 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-03 19:11:54 (1070471): Guest Log: 00:00:00.000234 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-03 19:11:54 (1070471): Guest Log: 00:00:00.000234 main     Process ID: 1368
2025-06-03 19:11:54 (1070471): Guest Log: 00:00:00.000235 main     Package type: LINUX_64BITS_GENERIC
2025-06-03 19:11:54 (1070471): Guest Log: 00:00:00.000766 main     5.2.32 r132073 started. Verbose level = 0
2025-06-03 19:11:55 (1070471): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-03 19:11:55 (1070471): Guest Log: [INFO] Mounting shared directory
2025-06-03 19:11:55 (1070471): Guest Log: [INFO] Checking for init_data.xml
2025-06-03 19:11:57 (1070471): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-03 19:11:57 (1070471): Guest Log: [INFO] Detected branch: prod
2025-06-03 19:11:57 (1070471): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-03 19:11:57 (1070471): Guest Log: Copying input files
2025-06-03 19:11:59 (1070471): Guest Log: Copied input files into RunAtlas.
2025-06-03 19:11:59 (1070471): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-03 19:11:59 (1070471): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-03 19:11:59 (1070471): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-03 19:11:59 (1070471): Guest Log: Further information can be found at the LHC@home message board.
2025-06-03 19:12:06 (1070471): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-03 19:12:07 (1070471): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-03 19:12:07 (1070471): Guest Log: 2.6.3.0 1643 0 32176 146760 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-03 19:12:07 (1070471): Guest Log: copied the webapp to /var/www
2025-06-03 19:12:07 (1070471): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-03 19:12:07 (1070471): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-03 19:12:07 (1070471): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-03 19:12:07 (1070471): Guest Log:  *** Starting ATLAS job. (PandaID=6677496500 taskID=45006595) ***
2025-06-03 19:58:01 (1070471): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 19:58:21 (1070471): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 20:00:32 (1070471): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 20:00:52 (1070471): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 20:01:32 (1070471): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 20:01:53 (1070471): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 20:02:03 (1070471): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 20:02:22 (1070471): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 20:06:44 (1070471): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 20:07:04 (1070471): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 20:40:33 (1070471): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 20:40:53 (1070471): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 20:41:53 (1070471): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 20:42:14 (1070471): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 20:42:24 (1070471): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 20:42:43 (1070471): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 20:43:04 (1070471): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 20:43:25 (1070471): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 20:53:47 (1070471): Status Report: Elapsed Time: '6000.000000'
2025-06-03 20:53:47 (1070471): Status Report: CPU Time: '25037.000000'
2025-06-03 20:54:31 (1070471): Guest Log:  *** Job finished ***
2025-06-03 20:54:31 (1070471): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:16,642 | INFO     | [data] queue_monitor thread has finished
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:20,943 | INFO     | job.realtimelogging is not enabled
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:21,945 | INFO     | [payload] run_realtimelog thread has finished
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:23,258 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140118154647360)>', '<ExcThread(monitor, started 140117570205440)>']
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:24,270 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:24,271 | INFO     | [monitor] control thread has ended
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,263 | INFO     | all workflow threads have been joined
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,263 | INFO     | end of generic workflow (traces error code: 0)
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,264 | INFO     | traces error code: 0
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,264 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,309 [wrapper] ==== pilot stdout END ====
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,312 [wrapper] ==== wrapper stdout RESUME ====
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,315 [wrapper] pilotpid: 5989
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,318 [wrapper] Pilot exit status: 0
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,484 [wrapper] pandaids: 6677496500
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,503 [wrapper] cleanup supervisor_pilot 25265 5990
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,506 [wrapper] Test setup, not cleaning
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,509 [wrapper] apfmon messages muted
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,511 [wrapper] ==== wrapper stdout END ====
2025-06-03 20:54:31 (1070471): Guest Log: 2025-06-04 00:51:28,514 [wrapper] ==== wrapper stderr END ====
2025-06-03 20:54:31 (1070471): Guest Log:  *** Error codes and diagnostics ***
2025-06-03 20:54:31 (1070471): Guest Log:     "exeErrorCode": 0,
2025-06-03 20:54:31 (1070471): Guest Log:     "exeErrorDiag": "",
2025-06-03 20:54:31 (1070471): Guest Log:     "pilotErrorCode": 0,
2025-06-03 20:54:31 (1070471): Guest Log:     "pilotErrorDiag": "",
2025-06-03 20:54:31 (1070471): Guest Log:  *** Listing of results directory ***
2025-06-03 20:54:31 (1070471): Guest Log: total 182660
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 06:55 pilot3.tar.gz
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 07:01 queuedata.json
2025-06-03 20:54:31 (1070471): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 07:01 runpilot2-wrapper.sh
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 atlas atlas     15093 Jun  3 23:11 start_atlas.sh
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 atlas atlas    508876 Jun  3 23:11 input.tar.gz
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 atlas atlas      6643 Jun  3 23:11 init_data.xml
2025-06-03 20:54:31 (1070471): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  3 23:11 EVNT.45006593._000932.pool.root.1 -> /data/./ATLAS.root_0
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 atlas atlas      2523 Jun  3 23:12 pandaJob.out
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas    986861 Jun  3 23:12 agis_schedconf.cvmfs.json
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  3 23:12 agis_ddmendpoints.agis.ALL.json
2025-06-03 20:54:31 (1070471): Guest Log: drwx------. 4 atlas atlas      4096 Jun  3 23:12 pilot3
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas 181741252 Jun  4 00:50 HITS.45006595._023284.pool.root.1
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 00:50 pilot_heartbeat.json
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas      1021 Jun  4 00:50 memory_monitor_summary.json
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas    294218 Jun  4 00:50 log.45006595._023284.job.log.tgz.1
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas      7698 Jun  4 00:51 heartbeat.json
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas      4794 Jun  4 00:51 pilotlog.txt
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas    475201 Jun  4 00:51 log.45006595._023284.job.log.1
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 00:51 output.list
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 00:51 runtime_log
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas    788480 Jun  4 00:51 result.tar.gz
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 atlas atlas      8622 Jun  4 00:51 runtime_log.err
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas       663 Jun  4 00:51 8PsLDmWpag7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmjXKDmeCIHkm.diag
2025-06-03 20:54:31 (1070471): Guest Log: Looking for outputfile HITS.45006595._023284.pool.root.1
2025-06-03 20:54:31 (1070471): Guest Log: HITS file was successfully produced
2025-06-03 20:54:31 (1070471): Guest Log: -rw-------. 1 atlas atlas 181741252 Jun  4 00:50 /home/atlas/RunAtlas/HITS.45006595._023284.pool.root.1
2025-06-03 20:54:31 (1070471): Guest Log: Successfully finished the ATLAS job!
2025-06-03 20:54:31 (1070471): Guest Log: Copying the results back to the shared directory!
2025-06-03 20:54:31 (1070471): Guest Log:  *** Contents of shared directory: ***
2025-06-03 20:54:31 (1070471): Guest Log: total 213404
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 root root 217190569 Jun  3 23:11 ATLAS.root_0
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 root root      6643 Jun  3 23:11 init_data.xml
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 root root    508876 Jun  3 23:11 input.tar.gz
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 root root    788480 Jun  4  2025 result.tar.gz
2025-06-03 20:54:31 (1070471): Guest Log: -rw-r--r--. 1 root root     15093 Jun  3 23:11 start_atlas.sh
2025-06-03 20:54:31 (1070471): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-03 20:54:31 (1070471): VM Completion File Detected.
2025-06-03 20:54:31 (1070471): Powering off VM.
2025-06-03 20:54:32 (1070471): Successfully stopped VM.
2025-06-03 20:54:32 (1070471): Deregistering VM. (boinc_f65c9c2c7293ed7f, slot#1)
2025-06-03 20:54:32 (1070471): Removing network bandwidth throttle group from VM.
2025-06-03 20:54:32 (1070471): Removing VM from VirtualBox.
20:54:37 (1070471): called boinc_finish(0)

</stderr_txt>
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