Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-07 00:03:02 (5200): Detected: vboxwrapper 26206
2025-06-07 00:03:02 (5200): Detected: BOINC client v8.0.2
2025-06-07 00:03:03 (5200): Detected: VirtualBox VboxManage Interface (Version: 6.1.2)
2025-06-07 00:03:03 (5200): Successfully copied 'init_data.xml' to the shared directory.
2025-06-07 00:03:03 (5200): Create VM. (boinc_9d2a42647cc6a322, slot#3)
2025-06-07 00:03:04 (5200): Setting Memory Size for VM. (4400MB)
2025-06-07 00:03:04 (5200): Setting CPU Count for VM. (4)
2025-06-07 00:03:05 (5200): Setting Chipset Options for VM.
2025-06-07 00:03:05 (5200): Setting Graphics Controller Options for VM.
2025-06-07 00:03:05 (5200): Setting Boot Options for VM.
2025-06-07 00:03:06 (5200): Setting Network Configuration for NAT.
2025-06-07 00:03:06 (5200): Enabling VM Network Access.
2025-06-07 00:03:06 (5200): Disabling USB Support for VM.
2025-06-07 00:03:06 (5200): Disabling COM Port Support for VM.
2025-06-07 00:03:07 (5200): Disabling LPT Port Support for VM.
2025-06-07 00:03:07 (5200): Disabling Audio Support for VM.
2025-06-07 00:03:07 (5200): Disabling Clipboard Support for VM.
2025-06-07 00:03:08 (5200): Disabling Drag and Drop Support for VM.
2025-06-07 00:03:08 (5200): Adding storage controller(s) to VM.
2025-06-07 00:03:09 (5200): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-07 00:03:10 (5200): Adding VirtualBox Guest Additions to VM.
2025-06-07 00:03:10 (5200): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-07 00:03:10 (5200): forwarding host port 60140 to guest port 80
2025-06-07 00:03:10 (5200): Enabling remote desktop for VM.
2025-06-07 00:03:11 (5200): Required extension pack not installed, remote desktop not enabled.
2025-06-07 00:03:11 (5200): Enabling shared directory for VM.
2025-06-07 00:03:11 (5200): Starting VM using VBoxManage interface. (boinc_9d2a42647cc6a322, slot#3)
2025-06-07 00:03:16 (5200): Successfully started VM. (PID = '1828')
2025-06-07 00:03:16 (5200): Reporting VM Process ID to BOINC.
2025-06-07 00:03:16 (5200): Guest Log: BIOS: VirtualBox 6.1.2
2025-06-07 00:03:16 (5200): Guest Log: CPUID EDX: 0x178bfbff
2025-06-07 00:03:16 (5200): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-07 00:03:16 (5200): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-07 00:03:16 (5200): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-07 00:03:16 (5200): Detected: Web Application Enabled (http://localhost:60140)
2025-06-07 00:03:16 (5200): Preference change detected
2025-06-07 00:03:16 (5200): Setting CPU throttle for VM. (90%)
2025-06-07 00:03:16 (5200): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-07 00:03:18 (5200): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-07 00:03:18 (5200): Guest Log: BIOS: Booting from Hard Disk...
2025-06-07 00:03:21 (5200): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-07 00:03:21 (5200): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-07 00:03:21 (5200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-07 00:03:30 (5200): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-07 00:03:30 (5200): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-07 00:03:42 (5200): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-07 00:03:42 (5200): Guest Log: 00:00:00.000134 main     Log opened 2025-06-07T00:03:40.468609000Z
2025-06-07 00:03:42 (5200): Guest Log: 00:00:00.000248 main     OS Product: Linux
2025-06-07 00:03:42 (5200): Guest Log: 00:00:00.000280 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-07 00:03:42 (5200): Guest Log: 00:00:00.000303 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-07 00:03:42 (5200): Guest Log: 00:00:00.000336 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-07 00:03:42 (5200): Guest Log: 00:00:00.000337 main     Process ID: 1304
2025-06-07 00:03:42 (5200): Guest Log: 00:00:00.000337 main     Package type: LINUX_64BITS_GENERIC
2025-06-07 00:03:42 (5200): Guest Log: 00:00:00.002016 main     5.2.32 r132073 started. Verbose level = 0
2025-06-07 00:03:42 (5200): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-07 00:03:42 (5200): Guest Log: [INFO] Mounting shared directory
2025-06-07 00:03:42 (5200): Guest Log: [INFO] Checking for init_data.xml
2025-06-07 00:03:52 (5200): Guest Log: 00:00:10.044420 timesync vgsvcTimeSyncWorker: Radical guest time change: -34 188 983 603 000ns (GuestNow=1 749 220 431 488 126 000 ns GuestLast=1 749 254 620 471 729 000 ns fSetTimeLastLoop=true )
2025-06-07 00:03:56 (5200): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-07 00:03:56 (5200): Guest Log: [INFO] Detected branch: prod
2025-06-07 00:03:57 (5200): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-07 00:03:57 (5200): Guest Log: Copying input files
2025-06-07 00:04:03 (5200): Guest Log: Copied input files into RunAtlas.
2025-06-07 00:04:03 (5200): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-07 00:04:03 (5200): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-07 00:04:03 (5200): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-07 00:04:03 (5200): Guest Log: Further information can be found at the LHC@home message board.
2025-06-07 00:04:22 (5200): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-07 00:04:24 (5200): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-07 00:04:24 (5200): Guest Log: 2.6.3.0 1583 0 30188 146863 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-07 00:04:27 (5200): Guest Log: copied the webapp to /var/www
2025-06-07 00:04:27 (5200): Guest Log: ATHENA_PROC_NUMBER=4
2025-06-07 00:04:27 (5200): Guest Log: ATHENA_CORE_NUMBER=4
2025-06-07 00:04:28 (5200): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-07 00:04:28 (5200): Guest Log:  *** Starting ATLAS job. (PandaID=6677545125 taskID=45006595) ***
2025-06-07 01:43:24 (5200): Status Report: Elapsed Time: '6000.000000'
2025-06-07 01:43:24 (5200): Status Report: CPU Time: '17991.796875'
2025-06-07 01:59:34 (5200): VM state change detected. (old = 'running', new = 'paused')
2025-06-07 02:57:15 (5200): Guest Log: 01:55:52.880145 timesync vgsvcTimeSyncWorker: Radical host time change: 3 470 620 000 000ns (HostNow=1 749 230 834 930 000 000 ns HostLast=1 749 227 364 310 000 000 ns)
2025-06-07 02:57:15 (5200): VM state change detected. (old = 'paused', new = 'running')
2025-06-07 02:57:25 (5200): Guest Log: 01:56:02.880733 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 470 607 167 000ns (GuestNow=1 749 230 844 930 665 000 ns GuestLast=1 749 227 374 323 498 000 ns fSetTimeLastLoop=true )
2025-06-07 04:03:59 (5200): Guest Log:  *** Job finished ***
2025-06-07 04:03:59 (5200): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:48,321 | INFO     | [job] create_data_payload thread has finished
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:48,422 | INFO     | [payload] run_realtimelog thread has finished
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:50,423 | INFO     | [data] queue_monitor thread has finished
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:50,586 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139935864723264)>', '<ExcThread(monitor, started 139935117989632)>']
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:51,120 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:51,120 | INFO     | [monitor] control thread has ended
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:55,592 | INFO     | all workflow threads have been joined
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:55,592 | INFO     | end of generic workflow (traces error code: 0)
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:55,592 | INFO     | traces error code: 0
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:55,592 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:56,050 [wrapper] ==== pilot stdout END ====
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:56,055 [wrapper] ==== wrapper stdout RESUME ====
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:56,060 [wrapper] pilotpid: 5924
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:56,064 [wrapper] Pilot exit status: 0
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:56,671 [wrapper] pandaids: 6677545125
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:56,701 [wrapper] cleanup supervisor_pilot  8268 5925
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:56,706 [wrapper] Test setup, not cleaning
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:56,712 [wrapper] apfmon messages muted
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:56,717 [wrapper] ==== wrapper stdout END ====
2025-06-07 04:03:59 (5200): Guest Log: 2025-06-06 18:33:56,722 [wrapper] ==== wrapper stderr END ====
2025-06-07 04:03:59 (5200): Guest Log:  *** Error codes and diagnostics ***
2025-06-07 04:03:59 (5200): Guest Log:     "exeErrorCode": 0,
2025-06-07 04:03:59 (5200): Guest Log:     "exeErrorDiag": "",
2025-06-07 04:03:59 (5200): Guest Log:     "pilotErrorCode": 0,
2025-06-07 04:03:59 (5200): Guest Log:     "pilotErrorDiag": "",
2025-06-07 04:03:59 (5200): Guest Log:  *** Listing of results directory ***
2025-06-07 04:03:59 (5200): Guest Log: total 183884
2025-06-07 04:03:59 (5200): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 08:07 pilot3.tar.gz
2025-06-07 04:03:59 (5200): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 08:10 queuedata.json
2025-06-07 04:03:59 (5200): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 08:11 runpilot2-wrapper.sh
2025-06-07 04:03:59 (5200): Guest Log: -rwxr-xr-x. 1 atlas atlas      6358 Jun  6 14:34 init_data.xml
2025-06-07 04:03:59 (5200): Guest Log: -rwxr-xr-x. 1 atlas atlas    508876 Jun  6 14:34 input.tar.gz
2025-06-07 04:03:59 (5200): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  6 14:34 start_atlas.sh
2025-06-07 04:03:59 (5200): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  6 14:34 EVNT.45006593._001011.pool.root.1 -> /data/./ATLAS.root_0
2025-06-07 04:03:59 (5200): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  6 14:34 pandaJob.out
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas    985728 Jun  6 14:37 agis_schedconf.cvmfs.json
2025-06-07 04:03:59 (5200): Guest Log: drwx------. 4 atlas atlas      4096 Jun  6 14:37 pilot3
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas 182121646 Jun  6 18:32 HITS.45006595._025290.pool.root.1
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas        97 Jun  6 18:32 pilot_heartbeat.json
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas      1033 Jun  6 18:33 memory_monitor_summary.json
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  6 18:33 agis_ddmendpoints.agis.ALL.json
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas    309141 Jun  6 18:33 log.45006595._025290.job.log.tgz.1
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas      7727 Jun  6 18:33 heartbeat.json
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  6 18:33 pilotlog.txt
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas    897849 Jun  6 18:33 log.45006595._025290.job.log.1
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas       357 Jun  6 18:33 output.list
2025-06-07 04:03:59 (5200): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  6 18:33 runtime_log
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas   1228800 Jun  6 18:33 result.tar.gz
2025-06-07 04:03:59 (5200): Guest Log: -rw-r--r--. 1 atlas atlas      8626 Jun  6 18:33 runtime_log.err
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas       668 Jun  6 18:33 Fh6MDmmubg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbtiKDmeAcgWo.diag
2025-06-07 04:03:59 (5200): Guest Log: Looking for outputfile HITS.45006595._025290.pool.root.1
2025-06-07 04:03:59 (5200): Guest Log: HITS file was successfully produced
2025-06-07 04:03:59 (5200): Guest Log: -rw-------. 1 atlas atlas 182121646 Jun  6 18:32 /home/atlas/RunAtlas/HITS.45006595._025290.pool.root.1
2025-06-07 04:04:00 (5200): Guest Log: Successfully finished the ATLAS job!
2025-06-07 04:04:00 (5200): Guest Log: Copying the results back to the shared directory!
2025-06-07 04:04:00 (5200): Guest Log:  *** Contents of shared directory: ***
2025-06-07 04:04:00 (5200): Guest Log: total 390576
2025-06-07 04:04:00 (5200): Guest Log: -rwxrwxrwx. 1 root root 216057750 Jun  6 14:33 ATLAS.root_0
2025-06-07 04:04:00 (5200): Guest Log: -rwxrwxrwx. 1 root root 182121646 Jun  6 18:33 HITS.pool.root.1
2025-06-07 04:04:00 (5200): Guest Log: -rwxrwxrwx. 1 root root      6358 Jun  6 14:33 init_data.xml
2025-06-07 04:04:00 (5200): Guest Log: -rwxrwxrwx. 1 root root    508876 Jun  3 11:16 input.tar.gz
2025-06-07 04:04:00 (5200): Guest Log: -rwxrwxrwx. 1 root root   1228800 Jun  6 18:33 result.tar.gz
2025-06-07 04:04:00 (5200): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 11:16 start_atlas.sh
2025-06-07 04:04:00 (5200): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-07 04:04:00 (5200): VM Completion File Detected.
2025-06-07 04:04:00 (5200): Powering off VM.
2025-06-07 04:04:01 (5200): Successfully stopped VM.
2025-06-07 04:04:01 (5200): Deregistering VM. (boinc_9d2a42647cc6a322, slot#3)
2025-06-07 04:04:01 (5200): Removing network bandwidth throttle group from VM.
2025-06-07 04:04:01 (5200): Removing VM from VirtualBox.
04:04:06 (5200): called boinc_finish(0)

</stderr_txt>
]]>

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