Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:30:33 (5054): wrapper (7.7.26015): starting
23:30:33 (5054): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 23:30:33] Arguments: --nthreads 8
[2025-06-03 23:30:33] Threads: 8
[2025-06-03 23:30:33] Checking for CVMFS
[2025-06-03 23:30:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 23:30:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 23:30:34] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 23:35:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 23:35:59] 2.11.2.0 5987 32298 94584 146755 3 69 22975946 25165824 3513 130560 0 16789373 99.792 18259358 2103 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 23:35:59] CVMFS is ok
[2025-06-03 23:35:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 23:35:59] Checking for apptainer binary...
[2025-06-03 23:35:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 23:35:59] Running /usr/bin/apptainer --version
[2025-06-03 23:36:00] apptainer version 1.3.2-1.el7
[2025-06-03 23:36:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 23:36:03] cg-vwn288.simple-grid.lan
[2025-06-03 23:36:03] apptainer works
[2025-06-03 23:36:03] Set ATHENA_PROC_NUMBER=8
[2025-06-03 23:36:03] Set ATHENA_CORE_NUMBER=8
[2025-06-03 23:36:03] Starting ATLAS job with PandaID=6677574039
[2025-06-03 23:36:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:37:04]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:37:04] 2025-06-04 01:36:31,821 | INFO     | monitor loop #1044: job 0:6677574039 is in state 'finished'
[2025-06-04 03:37:04] 2025-06-04 01:36:31,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:37:04] 2025-06-04 01:36:34,326 | INFO     | monitor loop #1045: job 0:6677574039 is in state 'finished'
[2025-06-04 03:37:04] 2025-06-04 01:36:34,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:37:04] 2025-06-04 01:36:35,917 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 03:37:04] 2025-06-04 01:36:35,917 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6677574039/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:37:04] 2025-06-04 01:36:35,918 | INFO     | extracted standard info from prmon json
[2025-06-04 03:37:04] 2025-06-04 01:36:35,918 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 03:37:04] 2025-06-04 01:36:35,918 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:37:04] 2025-06-04 01:36:35,919 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:37:04] 2025-06-04 01:36:35,919 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:37:04] 2025-06-04 01:36:35,924 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:37:04] 2025-06-04 01:36:35,925 | INFO     | sum of square deviations: 3531973200.0
[2025-06-04 03:37:04] 2025-06-04 01:36:35,927 | INFO     | sum of deviations: 76791658162.0
[2025-06-04 03:37:04] 2025-06-04 01:36:35,927 | INFO     | mean x: 1748994064.0
[2025-06-04 03:37:04] 2025-06-04 01:36:35,927 | INFO     | mean y: 2425888.56
[2025-06-04 03:37:04] 2025-06-04 01:36:35,927 | INFO     | -- intersect: -38023953895.42453
[2025-06-04 03:37:04] 2025-06-04 01:36:35,927 | INFO     | intersect: -38023953895.42453
[2025-06-04 03:37:04] 2025-06-04 01:36:35,935 | INFO     | chi2: 4.994860632378053
[2025-06-04 03:37:04] 2025-06-04 01:36:35,936 | INFO     | sum of square deviations: 3301699115.0
[2025-06-04 03:37:04] 2025-06-04 01:36:35,938 | INFO     | sum of deviations: 90504376147.50002
[2025-06-04 03:37:04] 2025-06-04 01:36:35,938 | INFO     | mean x: 1748993911.5
[2025-06-04 03:37:04] 2025-06-04 01:36:35,938 | INFO     | mean y: 2434781.159090909
[2025-06-04 03:37:04] 2025-06-04 01:36:35,938 | INFO     | -- intersect: -47940032818.91578
[2025-06-04 03:37:04] 2025-06-04 01:36:35,938 | INFO     | intersect: -47940032818.91578
[2025-06-04 03:37:04] 2025-06-04 01:36:35,939 | INFO     | chi2: 4.154776480194916
[2025-06-04 03:37:04] 2025-06-04 01:36:35,939 | INFO     | current chi2=4.154776480194916 (change=16.818970818474533 %)
[2025-06-04 03:37:04] 2025-06-04 01:36:35,939 | INFO     | right removable region: 219
[2025-06-04 03:37:04] 2025-06-04 01:36:35,939 | INFO     | sum of square deviations: 3301699115.0
[2025-06-04 03:37:04] 2025-06-04 01:36:35,941 | INFO     | sum of deviations: 7044331179.0
[2025-06-04 03:37:04] 2025-06-04 01:36:35,941 | INFO     | mean x: 1748994216.5
[2025-06-04 03:37:04] 2025-06-04 01:36:35,941 | INFO     | mean y: 2471988.3545454545
[2025-06-04 03:37:04] 2025-06-04 01:36:35,942 | INFO     | -- intersect: -3729089871.7823153
[2025-06-04 03:37:04] 2025-06-04 01:36:35,942 | INFO     | intersect: -3729089871.7823153
[2025-06-04 03:37:04] 2025-06-04 01:36:35,942 | INFO     | chi2: 1.1917072042313743
[2025-06-04 03:37:04] 2025-06-04 01:36:35,942 | INFO     | current chi2=1.1917072042313743 (change=76.14133222243676 %)
[2025-06-04 03:37:04] 2025-06-04 01:36:35,943 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 03:37:04] 2025-06-04 01:36:35,944 | INFO     | sum of deviations: -7661483978.000001
[2025-06-04 03:37:04] 2025-06-04 01:36:35,945 | INFO     | mean x: 1748994369.0
[2025-06-04 03:37:04] 2025-06-04 01:36:35,945 | INFO     | mean y: 2482067.5162790697
[2025-06-04 03:37:04] 2025-06-04 01:36:35,945 | INFO     | -- intersect: 4350756046.110269
[2025-06-04 03:37:04] 2025-06-04 01:36:35,945 | INFO     | intersect: 4350756046.110269
[2025-06-04 03:37:04] 2025-06-04 01:36:35,945 | INFO     | chi2: 0.9017698519344943
[2025-06-04 03:37:04] 2025-06-04 01:36:35,946 | INFO     | current chi2=0.9017698519344943 (change=24.329579553383955 %)
[2025-06-04 03:37:04] 2025-06-04 01:36:35,946 | INFO     | left removable region: 20
[2025-06-04 03:37:04] 2025-06-04 01:36:35,946 | INFO     | sum of square deviations: 2443580700.0
[2025-06-04 03:37:04] 2025-06-04 01:36:35,948 | INFO     | sum of deviations: 3475862837.9999995
[2025-06-04 03:37:04] 2025-06-04 01:36:35,948 | INFO     | mean x: 1748994491.0
[2025-06-04 03:37:04] 2025-06-04 01:36:35,948 | INFO     | mean y: 2495576.8492462314
[2025-06-04 03:37:04] 2025-06-04 01:36:35,948 | INFO     | -- intersect: -2485355532.4403405
[2025-06-04 03:37:04] 2025-06-04 01:36:35,948 | INFO     | intersect: -2485355532.4403405
[2025-06-04 03:37:04] 2025-06-04 01:36:35,949 | INFO     | chi2: 0.00010521398219541654
[2025-06-04 03:37:04] 2025-06-04 01:36:35,949 | INFO     | -- intersect: -2485355532.4403405
[2025-06-04 03:37:04] 2025-06-04 01:36:35,949 | INFO     | current memory leak: 1.42 B/s (using 199 data points, chi2=0.00)
[2025-06-04 03:37:04] 2025-06-04 01:36:35,950 | INFO     | ..............................
[2025-06-04 03:37:04] 2025-06-04 01:36:35,950 | INFO     | . Timing measurements:
[2025-06-04 03:37:04] 2025-06-04 01:36:35,950 | INFO     | . get job = 0 s
[2025-06-04 03:37:04] 2025-06-04 01:36:35,950 | INFO     | . initial setup = 7 s
[2025-06-04 03:37:04] 2025-06-04 01:36:35,950 | INFO     | . payload setup = 161 s
[2025-06-04 03:37:04] 2025-06-04 01:36:35,950 | INFO     | . stage-in = 0 s
[2025-06-04 03:37:04] 2025-06-04 01:36:35,950 | INFO     | . payload execution = 13848 s
[2025-06-04 03:37:04] 2025-06-04 01:36:35,951 | INFO     | . stage-out = 2 s
[2025-06-04 03:37:04] 2025-06-04 01:36:35,951 | INFO     | . log creation = 0 s
[2025-06-04 03:37:04] 2025-06-04 01:36:35,951 | INFO     | ..............................
[2025-06-04 03:37:04] 2025-06-04 01:36:36,407 | INFO     | 
[2025-06-04 03:37:04] 2025-06-04 01:36:36,407 | INFO     | job summary report
[2025-06-04 03:37:04] 2025-06-04 01:36:36,407 | INFO     | --------------------------------------------------
[2025-06-04 03:37:04] 2025-06-04 01:36:36,407 | INFO     | PanDA job id: 6677574039
[2025-06-04 03:37:04] 2025-06-04 01:36:36,407 | INFO     | task id: 45006595
[2025-06-04 03:37:04] 2025-06-04 01:36:36,407 | INFO     | errors: (none)
[2025-06-04 03:37:04] 2025-06-04 01:36:36,407 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | pilot state: finished 
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | transexitcode: 0
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | exeerrorcode: 0
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | exeerrordiag: 
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | exitcode: 0
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | exitmsg: OK
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | cpuconsumptiontime: 50627 s
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | nevents: 400
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | neventsw: 0
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | pid: 17716
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | pgrp: 17716
[2025-06-04 03:37:04] 2025-06-04 01:36:36,408 | INFO     | corecount: 8
[2025-06-04 03:37:04] 2025-06-04 01:36:36,409 | INFO     | event service: False
[2025-06-04 03:37:04] 2025-06-04 01:36:36,409 | INFO     | sizes: {0: 2404957, 1: 2405212, 2: 2405240, 12: 2405240, 23: 2405268, 34: 2405296, 45: 2405452, 55: 2405480, 66: 2405508, 77: 2405536, 88: 2405592, 94: 2406106, 98
[2025-06-04 03:37:04] 2025-06-04 01:36:36,409 | INFO     | --------------------------------------------------
[2025-06-04 03:37:04] 2025-06-04 01:36:36,409 | INFO     | 
[2025-06-04 03:37:04] 2025-06-04 01:36:36,409 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-04 03:37:04] 2025-06-04 01:36:36,897 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,898 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,898 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,898 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,898 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,898 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,898 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,898 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,898 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,898 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,898 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,899 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,899 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,899 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,899 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,899 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,899 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,899 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:37:04] 2025-06-04 01:36:36,899 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,899 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:37:04] 2025-06-04 01:36:36,900 | INFO     | job 6677574039 has completed (purged errors)
[2025-06-04 03:37:04] 2025-06-04 01:36:36,900 | INFO     | overall cleanup function is called
[2025-06-04 03:37:04] 2025-06-04 01:36:37,787 | INFO     | PID=11116 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 03:37:04] 2025-06-04 01:36:37,787 | INFO     | .. there are 9 such processes running
[2025-06-04 03:37:04] 2025-06-04 01:36:37,907 | INFO     | --- collectZombieJob: --- 10, [17716]
[2025-06-04 03:37:04] 2025-06-04 01:36:37,908 | INFO     | zombie collector waiting for pid 17716
[2025-06-04 03:37:04] 2025-06-04 01:36:37,908 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:37:04] 2025-06-04 01:36:37,908 | INFO     | collected zombie processes
[2025-06-04 03:37:04] 2025-06-04 01:36:37,908 | INFO     | will attempt to kill all subprocesses of pid=17716
[2025-06-04 03:37:04] 2025-06-04 01:36:38,012 | INFO     | process IDs to be killed: [17716] (in reverse order)
[2025-06-04 03:37:04] 2025-06-04 01:36:38,598 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:37:04] 2025-06-04 01:36:38,598 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:37:04] 2025-06-04 01:36:38,602 | INFO     | did not find any defunct processes belonging to 17716
[2025-06-04 03:37:04] 2025-06-04 01:36:38,606 | INFO     | did not find any defunct processes belonging to 17716
[2025-06-04 03:37:04] 2025-06-04 01:36:38,606 | INFO     | ready for new job
[2025-06-04 03:37:04] 2025-06-04 01:36:38,606 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:37:04] 2025-06-04 01:36:38,608 | INFO     | **************************************
[2025-06-04 03:37:04] 2025-06-04 01:36:38,608 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:37:04] 2025-06-04 01:36:38,609 | INFO     | **************************************
[2025-06-04 03:37:04] 2025-06-04 01:36:38,609 | INFO     | 
[2025-06-04 03:37:04] 2025-06-04 01:36:38,609 | INFO     | pilot is running in a VM
[2025-06-04 03:37:04] 2025-06-04 01:36:38,609 | INFO     | architecture information:
[2025-06-04 03:37:04] 2025-06-04 01:36:38,626 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:37:04] 2025-06-04 01:36:39,056 | INFO     | cat /etc/os-release:
[2025-06-04 03:37:04] NAME="CentOS Linux"
[2025-06-04 03:37:04] VERSION="7 (Core)"
[2025-06-04 03:37:04] ID="centos"
[2025-06-04 03:37:04] ID_LIKE="rhel fedora"
[2025-06-04 03:37:04] VERSION_ID="7"
[2025-06-04 03:37:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:37:04] ANSI_COLOR="0;31"
[2025-06-04 03:37:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:37:04] HOME_URL="https://www.centos.org/"
[2025-06-04 03:37:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:37:04] 
[2025-06-04 03:37:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:37:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:37:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:37:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:37:04] 
[2025-06-04 03:37:04] 2025-06-04 01:36:39,056 | INFO     | **************************************
[2025-06-04 03:37:04] 2025-06-04 01:36:39,560 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-04 03:37:04] 2025-06-04 01:36:39,784 | INFO     | sufficient remaining disk space (496789094400 B)
[2025-06-04 03:37:04] 2025-06-04 01:36:39,784 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:37:04] 2025-06-04 01:36:39,785 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:37:04] 2025-06-04 01:36:39,785 | INFO     | update_server=False
[2025-06-04 03:37:04] 2025-06-04 01:36:39,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:37:04] 2025-06-04 01:36:39,785 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:37:04] 2025-06-04 01:36:39,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:37:04] 2025-06-04 01:36:39,798 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:37:04] 2025-06-04 01:36:39,798 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:37:04] 2025-06-04 01:36:39,798 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:37:04] 2025-06-04 01:36:40,342 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:37:04] 2025-06-04 01:36:40,343 | INFO     | aborting loop
[2025-06-04 03:37:04] 2025-06-04 01:36:40,422 | INFO     | all data control threads have been joined
[2025-06-04 03:37:04] 2025-06-04 01:36:40,445 | INFO     | all job control threads have been joined
[2025-06-04 03:37:04] 2025-06-04 01:36:40,681 | INFO     | all payload control threads have been joined
[2025-06-04 03:37:04] 2025-06-04 01:36:40,791 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:41,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:37:04] 2025-06-04 01:36:41,348 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:41,353 | INFO     | [job] validate thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:41,429 | INFO     | [data] control thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:41,452 | INFO     | [job] control thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:41,537 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:41,644 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:41,664 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:41,688 | INFO     | [payload] control thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:41,719 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:41,784 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:41,792 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:42,166 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:42,306 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:43,802 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:49,984 | INFO     | job.realtimelogging is not enabled
[2025-06-04 03:37:04] 2025-06-04 01:36:50,991 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:37:04] 2025-06-04 01:36:52,499 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140698306279232)>', '<ExcThread(monitor, started 140697852159744)>']
[2025-06-04 03:37:04] 2025-06-04 01:36:52,880 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:37:04] 2025-06-04 01:36:52,880 | INFO     | [monitor] control thread has ended
[2025-06-04 03:37:04] 2025-06-04 01:36:57,524 | INFO     | all workflow threads have been joined
[2025-06-04 03:37:04] 2025-06-04 01:36:57,525 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:37:04] 2025-06-04 01:36:57,525 | INFO     | traces error code: 0
[2025-06-04 03:37:04] 2025-06-04 01:36:57,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:37:04] 2025-06-04 01:36:57,750 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:37:04] 2025-06-04 01:36:57,765 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:37:04] 2025-06-04 01:36:57,768 [wrapper] pilotpid: 11116
[2025-06-04 03:37:04] 2025-06-04 01:36:57,779 [wrapper] Pilot exit status: 0
[2025-06-04 03:37:04] 2025-06-04 01:36:57,808 [wrapper] pandaids: 6677574039
[2025-06-04 03:37:04] 2025-06-04 01:36:57,848 [wrapper] cleanup supervisor_pilot   624 11117
[2025-06-04 03:37:04] 2025-06-04 01:36:57,877 [wrapper] Test setup, not cleaning
[2025-06-04 03:37:04] 2025-06-04 01:36:57,881 [wrapper] apfmon messages muted
[2025-06-04 03:37:04] 2025-06-04 01:36:57,884 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:37:04] 2025-06-04 01:36:57,887 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:37:04]  *** Error codes and diagnostics ***
[2025-06-04 03:37:04]     "exeErrorCode": 0,
[2025-06-04 03:37:04]     "exeErrorDiag": "",
[2025-06-04 03:37:04]     "pilotErrorCode": 0,
[2025-06-04 03:37:04]     "pilotErrorDiag": "",
[2025-06-04 03:37:04]  *** Listing of results directory ***
[2025-06-04 03:37:04] total 392216
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc    495897 Jun  3 11:56 pilot3.tar.gz
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc      5111 Jun  3 12:07 queuedata.json
[2025-06-04 03:37:04] -rwx------. 1 boinc boinc     37140 Jun  3 12:09 runpilot2-wrapper.sh
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc       100 Jun  3 23:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:37:04] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 23:30 run_atlas
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc       105 Jun  3 23:30 job.xml
[2025-06-04 03:37:04] -rw-r--r--. 2 boinc boinc 213132844 Jun  3 23:30 EVNT.45006593._001136.pool.root.1
[2025-06-04 03:37:04] drwxrwx--x. 2 boinc boinc        68 Jun  3 23:30 shared
[2025-06-04 03:37:04] -rw-r--r--. 2 boinc boinc    508877 Jun  3 23:30 input.tar.gz
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc      6391 Jun  3 23:30 init_data.xml
[2025-06-04 03:37:04] -rw-r--r--. 2 boinc boinc     15093 Jun  3 23:30 start_atlas.sh
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc         0 Jun  3 23:30 boinc_lockfile
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc      2525 Jun  3 23:36 pandaJob.out
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc    986853 Jun  3 23:38 agis_schedconf.cvmfs.json
[2025-06-04 03:37:04] drwx------. 4 boinc boinc      4096 Jun  3 23:38 pilot3
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc 181449493 Jun  4 03:34 HITS.45006595._028409.pool.root.1
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc       531 Jun  4 03:35 boinc_task_state.xml
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc      1019 Jun  4 03:35 memory_monitor_summary.json
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc   1603667 Jun  4 03:35 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc    384121 Jun  4 03:35 log.45006595._028409.job.log.tgz.1
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc        95 Jun  4 03:36 pilot_heartbeat.json
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc      7691 Jun  4 03:36 heartbeat.json
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc      4488 Jun  4 03:36 pilotlog.txt
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc   1225736 Jun  4 03:36 log.45006595._028409.job.log.1
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc       357 Jun  4 03:36 output.list
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc       620 Jun  4 03:36 runtime_log
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc   1628160 Jun  4 03:36 result.tar.gz
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc      8659 Jun  4 03:36 runtime_log.err
[2025-06-04 03:37:04] -rw-------. 1 boinc boinc       657 Jun  4 03:36 gpjLDmDldg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkOjKDmQagGcm.diag
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc      8192 Jun  4 03:37 boinc_mmap_file
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc        28 Jun  4 03:37 wrapper_checkpoint.txt
[2025-06-04 03:37:04] -rw-r--r--. 1 boinc boinc     20805 Jun  4 03:37 stderr.txt
[2025-06-04 03:37:05] HITS file was successfully produced:
[2025-06-04 03:37:05] -rw-------. 1 boinc boinc 181449493 Jun  4 03:34 shared/HITS.pool.root.1
[2025-06-04 03:37:05]  *** Contents of shared directory: ***
[2025-06-04 03:37:05] total 387448
[2025-06-04 03:37:05] -rw-r--r--. 2 boinc boinc 213132844 Jun  3 23:30 ATLAS.root_0
[2025-06-04 03:37:05] -rw-r--r--. 2 boinc boinc    508877 Jun  3 23:30 input.tar.gz
[2025-06-04 03:37:05] -rw-r--r--. 2 boinc boinc     15093 Jun  3 23:30 start_atlas.sh
[2025-06-04 03:37:05] -rw-------. 1 boinc boinc 181449493 Jun  4 03:34 HITS.pool.root.1
[2025-06-04 03:37:05] -rw-------. 1 boinc boinc   1628160 Jun  4 03:36 result.tar.gz
03:37:06 (5054): run_atlas exited; CPU time 50825.363968
03:37:06 (5054): called boinc_finish(0)

</stderr_txt>
]]>

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