Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:28:50 (20629): wrapper (7.7.26015): starting
20:28:50 (20629): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 20:28:50] Arguments: --nthreads 8
[2025-06-03 20:28:50] Threads: 8
[2025-06-03 20:28:50] Checking for CVMFS
[2025-06-03 20:28:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:28:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:28:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:28:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:28:52] 2.11.2.0 15360 32123 101616 146750 0 158 25059453 25165824 3510 130560 0 16540502 99.771 18728563 2124 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 20:28:52] CVMFS is ok
[2025-06-03 20:28:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:28:52] Checking for apptainer binary...
[2025-06-03 20:28:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:28:52] Running /usr/bin/apptainer --version
[2025-06-03 20:28:52] apptainer version 1.3.2-1.el7
[2025-06-03 20:28:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:29:05] cg-vwn250.simple-grid.lan
[2025-06-03 20:29:05] apptainer works
[2025-06-03 20:29:05] Set ATHENA_PROC_NUMBER=8
[2025-06-03 20:29:05] Set ATHENA_CORE_NUMBER=8
[2025-06-03 20:29:05] Starting ATLAS job with PandaID=6677545919
[2025-06-03 20:29:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 00:34:01]  *** The last 200 lines of the pilot log: ***
[2025-06-04 00:34:01] 2025-06-03 22:24:05,109 | INFO     | mean x: 1748982681.5
[2025-06-04 00:34:01] 2025-06-03 22:24:05,109 | INFO     | mean y: 2424056.0045871558
[2025-06-04 00:34:01] 2025-06-03 22:24:05,109 | INFO     | -- intersect: -56773751186.47624
[2025-06-04 00:34:01] 2025-06-03 22:24:05,109 | INFO     | intersect: -56773751186.47624
[2025-06-04 00:34:01] 2025-06-03 22:24:05,110 | INFO     | chi2: 8.035015482953566
[2025-06-04 00:34:01] 2025-06-03 22:24:05,110 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,112 | INFO     | sum of deviations: 101797343998.00002
[2025-06-04 00:34:01] 2025-06-03 22:24:05,112 | INFO     | mean x: 1748982529.0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,112 | INFO     | mean y: 2422301.779342723
[2025-06-04 00:34:01] 2025-06-03 22:24:05,112 | INFO     | -- intersect: -59415061503.63708
[2025-06-04 00:34:01] 2025-06-03 22:24:05,112 | INFO     | intersect: -59415061503.63708
[2025-06-04 00:34:01] 2025-06-03 22:24:05,112 | INFO     | chi2: 8.054437099868824
[2025-06-04 00:34:01] 2025-06-03 22:24:05,113 | INFO     | current chi2=8.054437099868824 (change=-0.2417122525334421 %)
[2025-06-04 00:34:01] 2025-06-03 22:24:05,113 | INFO     | right removable region: 212
[2025-06-04 00:34:01] 2025-06-03 22:24:05,113 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,115 | INFO     | sum of deviations: 27297501280.999996
[2025-06-04 00:34:01] 2025-06-03 22:24:05,115 | INFO     | mean x: 1748982834.0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,115 | INFO     | mean y: 2478378.924882629
[2025-06-04 00:34:01] 2025-06-03 22:24:05,115 | INFO     | -- intersect: -15930639907.255354
[2025-06-04 00:34:01] 2025-06-03 22:24:05,115 | INFO     | intersect: -15930639907.255354
[2025-06-04 00:34:01] 2025-06-03 22:24:05,116 | INFO     | chi2: 2.6574390075848444
[2025-06-04 00:34:01] 2025-06-03 22:24:05,116 | INFO     | current chi2=2.6574390075848444 (change=66.92677178752609 %)
[2025-06-04 00:34:01] 2025-06-03 22:24:05,116 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,118 | INFO     | sum of deviations: -24566307471.999992
[2025-06-04 00:34:01] 2025-06-03 22:24:05,118 | INFO     | mean x: 1748982986.5
[2025-06-04 00:34:01] 2025-06-03 22:24:05,118 | INFO     | mean y: 2516629.8365384615
[2025-06-04 00:34:01] 2025-06-03 22:24:05,118 | INFO     | -- intersect: 15400614564.971111
[2025-06-04 00:34:01] 2025-06-03 22:24:05,118 | INFO     | intersect: 15400614564.971111
[2025-06-04 00:34:01] 2025-06-03 22:24:05,119 | INFO     | chi2: 0.2601195401149094
[2025-06-04 00:34:01] 2025-06-03 22:24:05,119 | INFO     | current chi2=0.2601195401149094 (change=90.21164589770535 %)
[2025-06-04 00:34:01] 2025-06-03 22:24:05,119 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,121 | INFO     | sum of deviations: -31886672922.999996
[2025-06-04 00:34:01] 2025-06-03 22:24:05,121 | INFO     | mean x: 1748983139.0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,121 | INFO     | mean y: 2522262.620689655
[2025-06-04 00:34:01] 2025-06-03 22:24:05,121 | INFO     | -- intersect: 21502540631.80646
[2025-06-04 00:34:01] 2025-06-03 22:24:05,121 | INFO     | intersect: 21502540631.80646
[2025-06-04 00:34:01] 2025-06-03 22:24:05,121 | INFO     | chi2: 0.16788018229081375
[2025-06-04 00:34:01] 2025-06-03 22:24:05,122 | INFO     | current chi2=0.16788018229081375 (change=35.460372482339594 %)
[2025-06-04 00:34:01] 2025-06-03 22:24:05,122 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 00:34:01] 2025-06-03 22:24:05,123 | INFO     | sum of deviations: -25946280825.999996
[2025-06-04 00:34:01] 2025-06-03 22:24:05,124 | INFO     | mean x: 1748983291.5
[2025-06-04 00:34:01] 2025-06-03 22:24:05,124 | INFO     | mean y: 2517411.8080808083
[2025-06-04 00:34:01] 2025-06-03 22:24:05,124 | INFO     | -- intersect: 18856272361.254093
[2025-06-04 00:34:01] 2025-06-03 22:24:05,124 | INFO     | intersect: 18856272361.254093
[2025-06-04 00:34:01] 2025-06-03 22:24:05,124 | INFO     | chi2: 0.15700122419153517
[2025-06-04 00:34:01] 2025-06-03 22:24:05,124 | INFO     | current chi2=0.15700122419153517 (change=6.480191974317308 %)
[2025-06-04 00:34:01] 2025-06-03 22:24:05,125 | INFO     | left removable region: 40
[2025-06-04 00:34:01] 2025-06-03 22:24:05,125 | INFO     | sum of square deviations: 1577789583.0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,126 | INFO     | sum of deviations: 2682982794.5
[2025-06-04 00:34:01] 2025-06-03 22:24:05,126 | INFO     | mean x: 1748983718.5
[2025-06-04 00:34:01] 2025-06-03 22:24:05,126 | INFO     | mean y: 2490225.726744186
[2025-06-04 00:34:01] 2025-06-03 22:24:05,127 | INFO     | -- intersect: -2971602945.6033974
[2025-06-04 00:34:01] 2025-06-03 22:24:05,127 | INFO     | intersect: -2971602945.6033974
[2025-06-04 00:34:01] 2025-06-03 22:24:05,127 | INFO     | chi2: 0.004366240486690069
[2025-06-04 00:34:01] 2025-06-03 22:24:05,127 | INFO     | -- intersect: -2971602945.6033974
[2025-06-04 00:34:01] 2025-06-03 22:24:05,127 | INFO     | current memory leak: 1.70 B/s (using 172 data points, chi2=0.00)
[2025-06-04 00:34:01] 2025-06-03 22:24:05,128 | INFO     | ..............................
[2025-06-04 00:34:01] 2025-06-03 22:24:05,128 | INFO     | . Timing measurements:
[2025-06-04 00:34:01] 2025-06-03 22:24:05,128 | INFO     | . get job = 0 s
[2025-06-04 00:34:01] 2025-06-03 22:24:05,128 | INFO     | . initial setup = 6 s
[2025-06-04 00:34:01] 2025-06-03 22:24:05,128 | INFO     | . payload setup = 175 s
[2025-06-04 00:34:01] 2025-06-03 22:24:05,128 | INFO     | . stage-in = 0 s
[2025-06-04 00:34:01] 2025-06-03 22:24:05,129 | INFO     | . payload execution = 13441 s
[2025-06-04 00:34:01] 2025-06-03 22:24:05,129 | INFO     | . stage-out = 4 s
[2025-06-04 00:34:01] 2025-06-03 22:24:05,129 | INFO     | . log creation = 1 s
[2025-06-04 00:34:01] 2025-06-03 22:24:05,129 | INFO     | ..............................
[2025-06-04 00:34:01] 2025-06-03 22:24:05,261 | INFO     | 
[2025-06-04 00:34:01] 2025-06-03 22:24:05,261 | INFO     | job summary report
[2025-06-04 00:34:01] 2025-06-03 22:24:05,261 | INFO     | --------------------------------------------------
[2025-06-04 00:34:01] 2025-06-03 22:24:05,261 | INFO     | PanDA job id: 6677545919
[2025-06-04 00:34:01] 2025-06-03 22:24:05,261 | INFO     | task id: 45006595
[2025-06-04 00:34:01] 2025-06-03 22:24:05,261 | INFO     | errors: (none)
[2025-06-04 00:34:01] 2025-06-03 22:24:05,262 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 00:34:01] 2025-06-03 22:24:05,262 | INFO     | pilot state: finished 
[2025-06-04 00:34:01] 2025-06-03 22:24:05,262 | INFO     | transexitcode: 0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,262 | INFO     | exeerrorcode: 0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,262 | INFO     | exeerrordiag: 
[2025-06-04 00:34:01] 2025-06-03 22:24:05,262 | INFO     | exitcode: 0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,262 | INFO     | exitmsg: OK
[2025-06-04 00:34:01] 2025-06-03 22:24:05,262 | INFO     | cpuconsumptiontime: 49149 s
[2025-06-04 00:34:01] 2025-06-03 22:24:05,262 | INFO     | nevents: 400
[2025-06-04 00:34:01] 2025-06-03 22:24:05,262 | INFO     | neventsw: 0
[2025-06-04 00:34:01] 2025-06-03 22:24:05,263 | INFO     | pid: 31907
[2025-06-04 00:34:01] 2025-06-03 22:24:05,263 | INFO     | pgrp: 31907
[2025-06-04 00:34:01] 2025-06-03 22:24:05,263 | INFO     | corecount: 8
[2025-06-04 00:34:01] 2025-06-03 22:24:05,263 | INFO     | event service: False
[2025-06-04 00:34:01] 2025-06-03 22:24:05,263 | INFO     | sizes: {0: 2404355, 1: 2405041, 2: 2405240, 13: 2405240, 23: 2405296, 34: 2405324, 45: 2405480, 55: 2405508, 66: 2405536, 77: 2405564, 88: 2405620, 91: 2406134, 98
[2025-06-04 00:34:01] 2025-06-03 22:24:05,263 | INFO     | --------------------------------------------------
[2025-06-04 00:34:01] 2025-06-03 22:24:05,263 | INFO     | 
[2025-06-04 00:34:01] 2025-06-03 22:24:05,263 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-04 00:34:01] 2025-06-03 22:24:05,330 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,331 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,331 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,331 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,331 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,331 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,332 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 00:34:01] 2025-06-03 22:24:05,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,332 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 00:34:01] 2025-06-03 22:24:05,333 | INFO     | job 6677545919 has completed (purged errors)
[2025-06-04 00:34:01] 2025-06-03 22:24:05,333 | INFO     | overall cleanup function is called
[2025-06-04 00:34:01] 2025-06-03 22:24:06,342 | INFO     | --- collectZombieJob: --- 10, [31907]
[2025-06-04 00:34:01] 2025-06-03 22:24:06,342 | INFO     | zombie collector waiting for pid 31907
[2025-06-04 00:34:01] 2025-06-03 22:24:06,342 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 00:34:01] 2025-06-03 22:24:06,342 | INFO     | collected zombie processes
[2025-06-04 00:34:01] 2025-06-03 22:24:06,343 | INFO     | will attempt to kill all subprocesses of pid=31907
[2025-06-04 00:34:01] 2025-06-03 22:24:06,450 | INFO     | process IDs to be killed: [31907] (in reverse order)
[2025-06-04 00:34:01] 2025-06-03 22:24:07,065 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 00:34:01] 2025-06-03 22:24:07,066 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 00:34:01] 2025-06-03 22:24:07,069 | INFO     | did not find any defunct processes belonging to 31907
[2025-06-04 00:34:01] 2025-06-03 22:24:07,073 | INFO     | did not find any defunct processes belonging to 31907
[2025-06-04 00:34:01] 2025-06-03 22:24:07,073 | INFO     | ready for new job
[2025-06-04 00:34:01] 2025-06-03 22:24:07,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 00:34:01] 2025-06-03 22:24:07,075 | INFO     | **************************************
[2025-06-04 00:34:01] 2025-06-03 22:24:07,076 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 00:34:01] 2025-06-03 22:24:07,076 | INFO     | **************************************
[2025-06-04 00:34:01] 2025-06-03 22:24:07,076 | INFO     | 
[2025-06-04 00:34:01] 2025-06-03 22:24:07,077 | INFO     | pilot is running in a VM
[2025-06-04 00:34:01] 2025-06-03 22:24:07,077 | INFO     | architecture information:
[2025-06-04 00:34:01] 2025-06-03 22:24:07,091 | INFO     | executing command: cat /etc/os-release
[2025-06-04 00:34:01] 2025-06-03 22:24:07,352 | INFO     | cat /etc/os-release:
[2025-06-04 00:34:01] NAME="CentOS Linux"
[2025-06-04 00:34:01] VERSION="7 (Core)"
[2025-06-04 00:34:01] ID="centos"
[2025-06-04 00:34:01] ID_LIKE="rhel fedora"
[2025-06-04 00:34:01] VERSION_ID="7"
[2025-06-04 00:34:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 00:34:01] ANSI_COLOR="0;31"
[2025-06-04 00:34:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 00:34:01] HOME_URL="https://www.centos.org/"
[2025-06-04 00:34:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 00:34:01] 
[2025-06-04 00:34:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 00:34:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 00:34:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 00:34:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 00:34:01] 
[2025-06-04 00:34:01] 2025-06-03 22:24:07,353 | INFO     | **************************************
[2025-06-04 00:34:01] 2025-06-03 22:24:07,856 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-04 00:34:01] 2025-06-03 22:24:08,118 | INFO     | sufficient remaining disk space (497079549952 B)
[2025-06-04 00:34:01] 2025-06-03 22:24:08,119 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 00:34:01] 2025-06-03 22:24:08,119 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 00:34:01] 2025-06-03 22:24:08,119 | INFO     | update_server=False
[2025-06-04 00:34:01] 2025-06-03 22:24:08,119 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 00:34:01] 2025-06-03 22:24:08,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 00:34:01] 2025-06-03 22:24:08,123 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 00:34:01] 2025-06-03 22:24:08,123 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 00:34:01] 2025-06-03 22:24:08,123 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 00:34:01] 2025-06-03 22:24:08,123 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 00:34:01] 2025-06-03 22:24:08,130 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:34:01] 2025-06-03 22:24:08,130 | INFO     | aborting loop
[2025-06-04 00:34:01] 2025-06-03 22:24:08,427 | INFO     | all job control threads have been joined
[2025-06-04 00:34:01] 2025-06-03 22:24:08,580 | INFO     | all payload control threads have been joined
[2025-06-04 00:34:01] 2025-06-03 22:24:09,125 | INFO     | [job] retrieve thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:09,136 | INFO     | [job] job monitor thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:09,187 | INFO     | all data control threads have been joined
[2025-06-04 00:34:01] 2025-06-03 22:24:09,255 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 00:34:01] 2025-06-03 22:24:09,306 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:09,378 | INFO     | [payload] failed_post thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:09,433 | INFO     | [job] control thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:09,442 | INFO     | [data] copytool_in thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:09,545 | INFO     | [job] validate thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:09,586 | INFO     | [payload] control thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:09,819 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:09,933 | INFO     | [payload] validate_post thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:10,127 | INFO     | [data] copytool_out thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:10,153 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:10,162 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:10,193 | INFO     | [data] control thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:10,275 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:34:01] 2025-06-03 22:24:11,281 | INFO     | [job] queue monitor thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:13,263 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 00:34:01] 2025-06-03 22:24:13,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139751600736064)>', '<ExcThread(monitor, started 139750786725632)>']
[2025-06-04 00:34:01] 2025-06-03 22:24:14,159 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 00:34:01] 2025-06-03 22:24:14,159 | INFO     | [monitor] control thread has ended
[2025-06-04 00:34:01] 2025-06-03 22:24:18,424 | INFO     | all workflow threads have been joined
[2025-06-04 00:34:01] 2025-06-03 22:24:18,424 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 00:34:01] 2025-06-03 22:24:18,424 | INFO     | traces error code: 0
[2025-06-04 00:34:01] 2025-06-03 22:24:18,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 00:34:01] 2025-06-03 22:24:18,695 [wrapper] ==== pilot stdout END ====
[2025-06-04 00:34:01] 2025-06-03 22:24:18,734 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 00:34:01] 2025-06-03 22:24:18,829 [wrapper] pilotpid: 25272
[2025-06-04 00:34:01] 2025-06-03 22:24:18,911 [wrapper] Pilot exit status: 0
[2025-06-04 00:34:01] 2025-06-03 22:24:19,306 [wrapper] pandaids: 6677545919
[2025-06-04 00:34:01] 2025-06-03 22:24:20,237 [wrapper] cleanup supervisor_pilot  7910 25273
[2025-06-04 00:34:01] 2025-06-03 22:24:20,304 [wrapper] Test setup, not cleaning
[2025-06-04 00:34:01] 2025-06-03 22:24:20,417 [wrapper] apfmon messages muted
[2025-06-04 00:34:01] 2025-06-03 22:24:20,517 [wrapper] ==== wrapper stdout END ====
[2025-06-04 00:34:01] 2025-06-03 22:24:20,607 [wrapper] ==== wrapper stderr END ====
[2025-06-04 00:34:01]  *** Error codes and diagnostics ***
[2025-06-04 00:34:01]     "exeErrorCode": 0,
[2025-06-04 00:34:01]     "exeErrorDiag": "",
[2025-06-04 00:34:01]     "pilotErrorCode": 0,
[2025-06-04 00:34:01]     "pilotErrorDiag": "",
[2025-06-04 00:34:01]  *** Listing of results directory ***
[2025-06-04 00:34:01] total 389004
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc    495897 Jun  3 10:07 pilot3.tar.gz
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc      5111 Jun  3 10:29 queuedata.json
[2025-06-04 00:34:01] -rwx------. 1 boinc boinc     37140 Jun  3 10:31 runpilot2-wrapper.sh
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc       100 Jun  3 20:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 00:34:01] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 20:28 run_atlas
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc       105 Jun  3 20:28 job.xml
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc      6393 Jun  3 20:28 init_data.xml
[2025-06-04 00:34:01] -rw-r--r--. 2 boinc boinc 216258769 Jun  3 20:28 EVNT.45006593._001027.pool.root.1
[2025-06-04 00:34:01] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:28 start_atlas.sh
[2025-06-04 00:34:01] drwxrwx--x. 2 boinc boinc        68 Jun  3 20:28 shared
[2025-06-04 00:34:01] -rw-r--r--. 2 boinc boinc    508877 Jun  3 20:28 input.tar.gz
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc         0 Jun  3 20:28 boinc_lockfile
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc      2524 Jun  3 20:29 pandaJob.out
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc    985078 Jun  3 20:32 agis_schedconf.cvmfs.json
[2025-06-04 00:34:01] drwx------. 4 boinc boinc      4096 Jun  3 20:32 pilot3
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc 175140931 Jun  4 00:21 HITS.45006595._025677.pool.root.1
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc       531 Jun  4 00:21 boinc_task_state.xml
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc      1028 Jun  4 00:22 memory_monitor_summary.json
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc   1603667 Jun  4 00:22 agis_ddmendpoints.agis.ALL.json
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc    380572 Jun  4 00:22 log.45006595._025677.job.log.tgz.1
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc        95 Jun  4 00:23 pilot_heartbeat.json
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc      7688 Jun  4 00:24 heartbeat.json
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc      4540 Jun  4 00:24 pilotlog.txt
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc   1181917 Jun  4 00:24 log.45006595._025677.job.log.1
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc       357 Jun  4 00:24 output.list
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc       620 Jun  4 00:24 runtime_log
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc   1576960 Jun  4 00:24 result.tar.gz
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc      8673 Jun  4 00:24 runtime_log.err
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc       657 Jun  4 00:24 BdQODmaEcg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8xiKDmPiMbzm.diag
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc      8192 Jun  4 00:34 boinc_mmap_file
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc        28 Jun  4 00:34 wrapper_checkpoint.txt
[2025-06-04 00:34:01] -rw-r--r--. 1 boinc boinc     20493 Jun  4 00:34 stderr.txt
[2025-06-04 00:34:01] HITS file was successfully produced:
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc 175140931 Jun  4 00:21 shared/HITS.pool.root.1
[2025-06-04 00:34:01]  *** Contents of shared directory: ***
[2025-06-04 00:34:01] total 384288
[2025-06-04 00:34:01] -rw-r--r--. 2 boinc boinc 216258769 Jun  3 20:28 ATLAS.root_0
[2025-06-04 00:34:01] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:28 start_atlas.sh
[2025-06-04 00:34:01] -rw-r--r--. 2 boinc boinc    508877 Jun  3 20:28 input.tar.gz
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc 175140931 Jun  4 00:21 HITS.pool.root.1
[2025-06-04 00:34:01] -rw-------. 1 boinc boinc   1576960 Jun  4 00:24 result.tar.gz
00:34:03 (20629): run_atlas exited; CPU time 49341.692140
00:34:03 (20629): called boinc_finish(0)

</stderr_txt>
]]>

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