Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:34:58 (3998037): wrapper (7.7.26015): starting
16:34:58 (3998037): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 16:34:58] Arguments: --nthreads 4
[2025-06-06 16:34:58] Threads: 4
[2025-06-06 16:34:58] Checking for CVMFS
[2025-06-06 16:34:58] No cvmfs_config command found, will try listing directly
[2025-06-06 16:34:58] CVMFS is ok
[2025-06-06 16:34:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 16:34:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 16:34:58] Further information can be found at the LHC@home message board.
[2025-06-06 16:34:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 16:34:58] Checking for apptainer binary...
[2025-06-06 16:34:58] which: no apptainer in ((null))
[2025-06-06 16:34:58] apptainer is not installed, using version from CVMFS
[2025-06-06 16:34:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 16:34:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2025-06-06 16:34:58] apptainer works
[2025-06-06 16:34:58] Set ATHENA_PROC_NUMBER=4
[2025-06-06 16:34:58] Set ATHENA_CORE_NUMBER=4
[2025-06-06 16:34:58] Starting ATLAS job with PandaID=6677547470
[2025-06-06 16:34:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 17:54:41]  *** The last 200 lines of the pilot log: ***
[2025-06-06 17:54:41]  surl=/scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6677547470/log.45006595._026124.job.log.tgz.1
[2025-06-06 17:54:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/6c/log.45006595._026124.job.log.tgz.1
[2025-06-06 17:54:41]  workdir=None
[2025-06-06 17:54:41] ]
[2025-06-06 17:54:41] 2025-06-06 15:54:15,436 | INFO     | transferring file log.45006595._026124.job.log.tgz.1 from /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6677547470/log.45006595._026124.job.log.tgz.1 to /scratch/b
[2025-06-06 17:54:41] 2025-06-06 15:54:15,436 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6677547470/log.45006595._026124.job.log.tgz.1 /scratch/boinc/var/slot60/slots/0/lo
[2025-06-06 17:54:41] 2025-06-06 15:54:15,453 | INFO     | adding to output.list: log.45006595._026124.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/6c/log.45006595._026124.job.log.tg
[2025-06-06 17:54:41] 2025-06-06 15:54:15,454 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 17:54:41] 2025-06-06 15:54:15,454 | INFO     | summary of transferred files:
[2025-06-06 17:54:41] 2025-06-06 15:54:15,454 | INFO     |  -- lfn=log.45006595._026124.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 17:54:41] 2025-06-06 15:54:15,454 | INFO     | stage-out finished correctly
[2025-06-06 17:54:41] 2025-06-06 15:54:16,212 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 17:54:41] 2025-06-06 15:54:16,896 | INFO     | job 6677547470 has state=finished
[2025-06-06 17:54:41] 2025-06-06 15:54:16,897 | INFO     | preparing for final server update for job 6677547470 in state='finished'
[2025-06-06 17:54:41] 2025-06-06 15:54:16,898 | INFO     | this job has now completed (state=finished)
[2025-06-06 17:54:41] 2025-06-06 15:54:16,898 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 17:54:41] 2025-06-06 15:54:16,898 | INFO     | log transfer has been attempted: DONE
[2025-06-06 17:54:41] 2025-06-06 15:54:16,898 | INFO     | job 6677547470 has finished - writing final server update
[2025-06-06 17:54:41] 2025-06-06 15:54:16,898 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3815406/.job.ad'
[2025-06-06 17:54:41] 2025-06-06 15:54:16,898 | INFO     | total number of processed events: 400 (read)
[2025-06-06 17:54:41] 2025-06-06 15:54:16,904 | INFO     | executing command: lscpu
[2025-06-06 17:54:41] 2025-06-06 15:54:16,983 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 17:54:41] 2025-06-06 15:54:18,825 | INFO     | PID=4002512 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 17:54:41] 2025-06-06 15:54:18,828 | INFO     | .. there are 4 such processes running
[2025-06-06 17:54:41] 2025-06-06 15:54:20,879 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 17:54:41] 2025-06-06 15:54:20,879 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6677547470/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 17:54:41] 2025-06-06 15:54:20,880 | INFO     | extracted standard info from prmon json
[2025-06-06 17:54:41] 2025-06-06 15:54:20,880 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 17:54:41] 2025-06-06 15:54:20,881 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 17:54:41] 2025-06-06 15:54:20,881 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 17:54:41] 2025-06-06 15:54:20,881 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 17:54:41] 2025-06-06 15:54:20,882 | INFO     | fitting pss+swap vs Time
[2025-06-06 17:54:41] 2025-06-06 15:54:20,882 | INFO     | sum of square deviations: 110960220.0
[2025-06-06 17:54:41] 2025-06-06 15:54:20,882 | INFO     | sum of deviations: -4555429919.0
[2025-06-06 17:54:41] 2025-06-06 15:54:20,882 | INFO     | mean x: 1749222975.0
[2025-06-06 17:54:41] 2025-06-06 15:54:20,882 | INFO     | mean y: 2361728.1830985914
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | -- intersect: 71816050231.29881
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | intersect: 71816050231.29881
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | chi2: 0.11257163948273333
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | -- intersect: 71816050231.29881
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | current memory leak: -41.05 B/s (using 71 data points, chi2=0.11)
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | ..............................
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | . Timing measurements:
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | . get job = 0 s
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | . initial setup = 1 s
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | . payload setup = 6 s
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | . stage-in = 0 s
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | . payload execution = 4721 s
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | . stage-out = 0 s
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | . log creation = 0 s
[2025-06-06 17:54:41] 2025-06-06 15:54:20,883 | INFO     | ..............................
[2025-06-06 17:54:41] 2025-06-06 15:54:21,245 | WARNING  | process 4009959 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 17:54:41] 2025-06-06 15:54:21,245 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6677547470/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 17:54:41] 2025-06-06 15:54:21,246 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6677547470/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 17:54:41] 2025-06-06 15:54:21,247 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2116169 B
[2025-06-06 17:54:41] 2025-06-06 15:54:21,247 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15317 B
[2025-06-06 17:54:41] 2025-06-06 15:54:21,247 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-06-06 17:54:41] 2025-06-06 15:54:21,263 | INFO     | sufficient remaining disk space (3374163427328 B)
[2025-06-06 17:54:41] 2025-06-06 15:54:21,264 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-06 17:54:41] 2025-06-06 15:54:21,264 | INFO     | size of work directory /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6677547470: 2414352 B (within 2537553920 B limit)
[2025-06-06 17:54:41] 2025-06-06 15:54:21,265 | INFO     | pfn file=/scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6677547470/HITS.45006595._026124.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-06 17:54:41] 2025-06-06 15:54:21,265 | INFO     | total size of present files: 0 B (workdir size: 2414352 B)
[2025-06-06 17:54:41] 2025-06-06 15:54:21,265 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6677547470/HITS.45006595._026124.pool.root.1 since it does not exist
[2025-06-06 17:54:41] 2025-06-06 15:54:21,276 | INFO     | 
[2025-06-06 17:54:41] 2025-06-06 15:54:21,277 | INFO     | job summary report
[2025-06-06 17:54:41] 2025-06-06 15:54:21,277 | INFO     | --------------------------------------------------
[2025-06-06 17:54:41] 2025-06-06 15:54:21,277 | INFO     | PanDA job id: 6677547470
[2025-06-06 17:54:41] 2025-06-06 15:54:21,277 | INFO     | task id: 45006595
[2025-06-06 17:54:41] 2025-06-06 15:54:21,277 | INFO     | errors: (none)
[2025-06-06 17:54:41] 2025-06-06 15:54:21,277 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 17:54:41] 2025-06-06 15:54:21,277 | INFO     | pilot state: finished 
[2025-06-06 17:54:41] 2025-06-06 15:54:21,277 | INFO     | transexitcode: 0
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | exeerrorcode: 0
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | exeerrordiag: 
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | exitcode: 0
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | exitmsg: OK
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | cpuconsumptiontime: 18254 s
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | nevents: 400
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | neventsw: 0
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | pid: 4009959
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | pgrp: 4009959
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | corecount: 4
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | event service: False
[2025-06-06 17:54:41] 2025-06-06 15:54:21,278 | INFO     | sizes: {0: 2397182, 1: 2397381, 5: 2397587, 11: 2397643, 4732: 2423805, 4733: 2432768, 4734: 2432952, 4738: 2433122}
[2025-06-06 17:54:41] 2025-06-06 15:54:21,279 | INFO     | --------------------------------------------------
[2025-06-06 17:54:41] 2025-06-06 15:54:21,279 | INFO     | 
[2025-06-06 17:54:41] 2025-06-06 15:54:21,279 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-06-06 17:54:41] 2025-06-06 15:54:21,302 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,302 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,302 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,303 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,303 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,303 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,303 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,303 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,303 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,303 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,303 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,303 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,303 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,303 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,304 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,304 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,304 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,304 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 17:54:41] 2025-06-06 15:54:21,304 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,304 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 17:54:41] 2025-06-06 15:54:21,304 | INFO     | job 6677547470 has completed (purged errors)
[2025-06-06 17:54:41] 2025-06-06 15:54:21,304 | INFO     | overall cleanup function is called
[2025-06-06 17:54:41] 2025-06-06 15:54:21,586 | INFO     | number of running child processes to parent process 4009959: 1
[2025-06-06 17:54:41] 2025-06-06 15:54:21,587 | INFO     | maximum number of monitored processes: 6
[2025-06-06 17:54:41] 2025-06-06 15:54:21,587 | INFO     | aborting job monitoring since job object (job id=6677547470) has expired
[2025-06-06 17:54:41] 2025-06-06 15:54:22,313 | INFO     | --- collectZombieJob: --- 10, [4009959]
[2025-06-06 17:54:41] 2025-06-06 15:54:22,314 | INFO     | zombie collector waiting for pid 4009959
[2025-06-06 17:54:41] 2025-06-06 15:54:22,314 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 17:54:41] 2025-06-06 15:54:22,314 | INFO     | collected zombie processes
[2025-06-06 17:54:41] 2025-06-06 15:54:22,314 | INFO     | will attempt to kill all subprocesses of pid=4009959
[2025-06-06 17:54:41] 2025-06-06 15:54:22,614 | INFO     | process IDs to be killed: [4009959] (in reverse order)
[2025-06-06 17:54:41] 2025-06-06 15:54:22,732 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 17:54:41] 2025-06-06 15:54:22,732 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 17:54:41] 2025-06-06 15:54:22,745 | INFO     | did not find any defunct processes belonging to 4009959
[2025-06-06 17:54:41] 2025-06-06 15:54:22,754 | INFO     | did not find any defunct processes belonging to 4009959
[2025-06-06 17:54:41] 2025-06-06 15:54:22,754 | INFO     | ready for new job
[2025-06-06 17:54:41] 2025-06-06 15:54:22,754 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 17:54:41] 2025-06-06 15:54:22,756 | INFO     | **************************************
[2025-06-06 17:54:41] 2025-06-06 15:54:22,758 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 17:54:41] 2025-06-06 15:54:22,758 | INFO     | **************************************
[2025-06-06 17:54:41] 2025-06-06 15:54:22,758 | INFO     | 
[2025-06-06 17:54:41] 2025-06-06 15:54:22,764 | INFO     | architecture information:
[2025-06-06 17:54:41] 2025-06-06 15:54:22,764 | INFO     | executing command: cat /etc/os-release
[2025-06-06 17:54:41] 2025-06-06 15:54:22,779 | INFO     | cat /etc/os-release:
[2025-06-06 17:54:41] NAME="CentOS Linux"
[2025-06-06 17:54:41] VERSION="7 (Core)"
[2025-06-06 17:54:41] ID="centos"
[2025-06-06 17:54:41] ID_LIKE="rhel fedora"
[2025-06-06 17:54:41] VERSION_ID="7"
[2025-06-06 17:54:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 17:54:41] ANSI_COLOR="0;31"
[2025-06-06 17:54:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 17:54:41] HOME_URL="https://www.centos.org/"
[2025-06-06 17:54:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 17:54:41] 
[2025-06-06 17:54:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 17:54:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 17:54:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 17:54:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 17:54:41] 
[2025-06-06 17:54:41] 2025-06-06 15:54:22,779 | INFO     | **************************************
[2025-06-06 17:54:41] 2025-06-06 15:54:23,282 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-06-06 17:54:41] 2025-06-06 15:54:23,300 | INFO     | sufficient remaining disk space (3374165524480 B)
[2025-06-06 17:54:41] 2025-06-06 15:54:23,300 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 17:54:41] 2025-06-06 15:54:23,301 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 17:54:41] 2025-06-06 15:54:23,301 | INFO     | update_server=False
[2025-06-06 17:54:41] 2025-06-06 15:54:23,301 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 17:54:41] 2025-06-06 15:54:23,301 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 17:54:41] 2025-06-06 15:54:23,301 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 17:54:41] 2025-06-06 15:54:23,302 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 17:54:41] 2025-06-06 15:54:23,302 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 17:54:41] 2025-06-06 15:54:23,303 | INFO     | aborting loop
[2025-06-06 17:54:41] 2025-06-06 15:54:23,303 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 17:54:41] 2025-06-06 15:54:23,303 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 17:54:41] 2025-06-06 15:54:23,524 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 17:54:41] 2025-06-06 15:54:24,306 | INFO     | [job] retrieve thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:24,308 | INFO     | [job] job monitor thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:24,404 | INFO     | all data control threads have been joined
[2025-06-06 17:54:41] 2025-06-06 15:54:24,771 | INFO     | all payload control threads have been joined
[2025-06-06 17:54:41] 2025-06-06 15:54:24,925 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:24,945 | INFO     | all job control threads have been joined
[2025-06-06 17:54:41] 2025-06-06 15:54:25,135 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:25,144 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:25,196 | INFO     | [data] copytool_in thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:25,410 | INFO     | [data] control thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:25,423 | INFO     | [payload] failed_post thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:25,482 | INFO     | [job] validate thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:25,529 | INFO     | [data] copytool_out thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:25,578 | INFO     | [payload] validate_post thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:25,777 | INFO     | [payload] control thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:25,951 | INFO     | [job] control thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:25,951 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 17:54:41] 2025-06-06 15:54:26,957 | INFO     | [job] queue monitor thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:27,308 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:33,837 | INFO     | job.realtimelogging is not enabled
[2025-06-06 17:54:41] 2025-06-06 15:54:34,842 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 17:54:41] 2025-06-06 15:54:35,813 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23099562202944)>', '<ExcThread(monitor, started 23099326039808)>']
[2025-06-06 17:54:41] 2025-06-06 15:54:36,369 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 17:54:41] 2025-06-06 15:54:36,369 | INFO     | [monitor] control thread has ended
[2025-06-06 17:54:41] 2025-06-06 15:54:40,839 | INFO     | all workflow threads have been joined
[2025-06-06 17:54:41] 2025-06-06 15:54:40,839 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 17:54:41] 2025-06-06 15:54:40,839 | INFO     | traces error code: 0
[2025-06-06 17:54:41] 2025-06-06 15:54:40,839 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 17:54:41] 2025-06-06 15:54:40,934 [wrapper] ==== pilot stdout END ====
[2025-06-06 17:54:41] 2025-06-06 15:54:40,937 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 17:54:41] 2025-06-06 15:54:40,939 [wrapper] pilotpid: 4002512
[2025-06-06 17:54:41] 2025-06-06 15:54:40,942 [wrapper] Pilot exit status: 0
[2025-06-06 17:54:41] 2025-06-06 15:54:40,952 [wrapper] pandaids: 6677547470
[2025-06-06 17:54:41] 2025-06-06 15:54:41,027 [wrapper] cleanup supervisor_pilot 4180253 4002513
[2025-06-06 17:54:41] 2025-06-06 15:54:41,030 [wrapper] Test setup, not cleaning
[2025-06-06 17:54:41] 2025-06-06 15:54:41,033 [wrapper] apfmon messages muted
[2025-06-06 17:54:41] 2025-06-06 15:54:41,035 [wrapper] ==== wrapper stdout END ====
[2025-06-06 17:54:41] 2025-06-06 15:54:41,038 [wrapper] ==== wrapper stderr END ====
[2025-06-06 17:54:41]  *** Error codes and diagnostics ***
[2025-06-06 17:54:41]     "exeErrorCode": 0,
[2025-06-06 17:54:41]     "exeErrorDiag": "",
[2025-06-06 17:54:41]     "pilotErrorCode": 0,
[2025-06-06 17:54:41]     "pilotErrorDiag": "",
[2025-06-06 17:54:41]  *** Listing of results directory ***
[2025-06-06 17:54:41] total 387412
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc    495897 Jun  3 10:43 pilot3.tar.gz
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc      5111 Jun  3 10:47 queuedata.json
[2025-06-06 17:54:41] -rwx------ 1 boinc boinc     37140 Jun  3 10:50 runpilot2-wrapper.sh
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc       100 Jun  6 16:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 17:54:41] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 16:34 run_atlas
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc       105 Jun  6 16:34 job.xml
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc      6683 Jun  6 16:34 init_data.xml
[2025-06-06 17:54:41] -rw-r--r-- 2 boinc boinc 215969779 Jun  6 16:34 EVNT.45006593._001045.pool.root.1
[2025-06-06 17:54:41] -rw-r--r-- 2 boinc boinc     15093 Jun  6 16:34 start_atlas.sh
[2025-06-06 17:54:41] drwxrwx--x 2 boinc boinc      4096 Jun  6 16:34 shared
[2025-06-06 17:54:41] -rw-r--r-- 2 boinc boinc    508883 Jun  6 16:34 input.tar.gz
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc         0 Jun  6 16:34 boinc_lockfile
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc      2525 Jun  6 16:34 pandaJob.out
[2025-06-06 17:54:41] -rw------- 1 boinc boinc    985728 Jun  6 16:35 agis_schedconf.cvmfs.json
[2025-06-06 17:54:41] -rw------- 1 boinc boinc   1598969 Jun  6 16:35 agis_ddmendpoints.agis.ALL.json
[2025-06-06 17:54:41] drwx------ 4 boinc boinc      4096 Jun  6 16:35 pilot3
[2025-06-06 17:54:41] -rw------- 1 boinc boinc        95 Jun  6 17:53 pilot_heartbeat.json
[2025-06-06 17:54:41] -rw------- 1 boinc boinc 175491154 Jun  6 17:53 HITS.45006595._026124.pool.root.1
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc       529 Jun  6 17:53 boinc_task_state.xml
[2025-06-06 17:54:41] -rw------- 1 boinc boinc      1027 Jun  6 17:54 memory_monitor_summary.json
[2025-06-06 17:54:41] -rw------- 1 boinc boinc    235608 Jun  6 17:54 log.45006595._026124.job.log.tgz.1
[2025-06-06 17:54:41] -rw------- 1 boinc boinc      7697 Jun  6 17:54 heartbeat.json
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc        27 Jun  6 17:54 wrapper_checkpoint.txt
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc      8192 Jun  6 17:54 boinc_mmap_file
[2025-06-06 17:54:41] -rw------- 1 boinc boinc      4559 Jun  6 17:54 pilotlog.txt
[2025-06-06 17:54:41] -rw------- 1 boinc boinc    471961 Jun  6 17:54 log.45006595._026124.job.log.1
[2025-06-06 17:54:41] -rw------- 1 boinc boinc       357 Jun  6 17:54 output.list
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc       620 Jun  6 17:54 runtime_log
[2025-06-06 17:54:41] -rw------- 1 boinc boinc    727040 Jun  6 17:54 result.tar.gz
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc      9025 Jun  6 17:54 runtime_log.err
[2025-06-06 17:54:41] -rw------- 1 boinc boinc       661 Jun  6 17:54 ZOKODmWWcg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmr0iKDmi1B6Bn.diag
[2025-06-06 17:54:41] -rw-r--r-- 1 boinc boinc     22482 Jun  6 17:54 stderr.txt
[2025-06-06 17:54:41] HITS file was successfully produced:
[2025-06-06 17:54:41] -rw------- 1 boinc boinc 175491154 Jun  6 17:53 shared/HITS.pool.root.1
[2025-06-06 17:54:41]  *** Contents of shared directory: ***
[2025-06-06 17:54:41] total 383524
[2025-06-06 17:54:41] -rw-r--r-- 2 boinc boinc 215969779 Jun  6 16:34 ATLAS.root_0
[2025-06-06 17:54:41] -rw-r--r-- 2 boinc boinc     15093 Jun  6 16:34 start_atlas.sh
[2025-06-06 17:54:41] -rw-r--r-- 2 boinc boinc    508883 Jun  6 16:34 input.tar.gz
[2025-06-06 17:54:41] -rw------- 1 boinc boinc 175491154 Jun  6 17:53 HITS.pool.root.1
[2025-06-06 17:54:41] -rw------- 1 boinc boinc    727040 Jun  6 17:54 result.tar.gz
17:54:42 (3998037): run_atlas exited; CPU time 18385.905476
17:54:42 (3998037): called boinc_finish(0)

</stderr_txt>
]]>

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