Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:31:34 (985531): wrapper (7.7.26015): starting
04:31:34 (985531): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 04:31:34] Arguments: --nthreads 12
[2025-06-03 04:31:34] Threads: 12
[2025-06-03 04:31:34] Checking for CVMFS
[2025-06-03 04:31:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 04:31:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 04:31:35] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 04:31:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 04:31:35] 2.11.5.0 3603591 22144 220668 146741 2 558 24342228 45568001 12862 130560 0 226515804 99.806 134953014 26836 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-06-03 04:31:35] CVMFS is ok
[2025-06-03 04:31:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 04:31:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 04:31:35] Further information can be found at the LHC@home message board.
[2025-06-03 04:31:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 04:31:35] Checking for apptainer binary...
[2025-06-03 04:31:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 04:31:35] Running /usr/bin/apptainer --version
[2025-06-03 04:31:36] apptainer version 1.4.0-1.el9
[2025-06-03 04:31:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 04:31:36] wns0063.triumf.lcg
[2025-06-03 04:31:36] apptainer works
[2025-06-03 04:31:36] Set ATHENA_PROC_NUMBER=12
[2025-06-03 04:31:36] Set ATHENA_CORE_NUMBER=12
[2025-06-03 04:31:36] Starting ATLAS job with PandaID=6677571444
[2025-06-03 04:31:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 04:35:00]  *** The last 200 lines of the pilot log: ***
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | found no stored workdir sizes
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | WARNING  | wrong length of table data, x=[1748950337.0], y=[707.0] (must be same and length>=4)
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | INFO     | ..............................
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | INFO     | . Timing measurements:
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . get job = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . initial setup = 2 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . payload setup = 4 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . stage-in = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . payload execution = 25 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | . stage-out = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | . log creation = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | ..............................
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677571444/pilotlog.txt
[2025-06-03 04:35:00] 2025-06-03 11:34:46,406 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-03 04:35:00] - Log from pilotlog.txt -
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | INFO     | extracted standard info from prmon json
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | found no stored workdir sizes
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | WARNING  | wrong length of table data, x=[1748950337.0], y=[707.0] (must be same and length>=4)
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | INFO     | ..............................
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | INFO     | . Timing measurements:
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . get job = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . initial setup = 2 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . payload setup = 4 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . stage-in = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . payload execution = 25 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | . stage-out = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | . log creation = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | ..............................
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677571444/pilotlog.txt
[2025-06-03 04:35:00] 2025-06-03 11:34:46,406 | WARNING  | 
[2025-06-03 04:35:00] [begin log extracts]
[2025-06-03 04:35:00] - Log from pilotlog.txt -
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | INFO     | extracted standard info from prmon json
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 04:35:00] 2025-06-03 11:34:46,381 | WARNING  | found no stored workdir sizes
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | WARNING  | wrong length of table data, x=[1748950337.0], y=[707.0] (must be same and length>=4)
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | INFO     | ..............................
[2025-06-03 04:35:00] 2025-06-03 11:34:46,382 | INFO     | . Timing measurements:
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . get job = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . initial setup = 2 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . payload setup = 4 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . stage-in = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,384 | INFO     | . payload execution = 25 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | . stage-out = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | . log creation = 0 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | ..............................
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 04:35:00] 2025-06-03 11:34:46,385 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677571444/pilotlog.txt
[2025-06-03 04:35:00] [end log extracts]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,406 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-03 04:35:00] 2025-06-03 11:34:46,407 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | 
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | job summary report
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | --------------------------------------------------
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | PanDA job id: 6677571444
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | task id: 45006595
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-03 04:32:33,468 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | pilot state: failed 
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | transexitcode: 65
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | exeerrorcode: 65
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | exitcode: 65
[2025-06-03 04:35:00] 2025-06-03 11:34:46,470 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 04:35:00] 2025-06-03 11:34:46,471 | INFO     | cpuconsumptiontime: 16 s
[2025-06-03 04:35:00] 2025-06-03 11:34:46,471 | INFO     | nevents: 0
[2025-06-03 04:35:00] 2025-06-03 11:34:46,471 | INFO     | neventsw: 0
[2025-06-03 04:35:00] 2025-06-03 11:34:46,471 | INFO     | pid: 998359
[2025-06-03 04:35:00] 2025-06-03 11:34:46,471 | INFO     | pgrp: 998359
[2025-06-03 04:35:00] 2025-06-03 11:34:46,471 | INFO     | corecount: 12
[2025-06-03 04:35:00] 2025-06-03 11:34:46,471 | INFO     | event service: False
[2025-06-03 04:35:00] 2025-06-03 11:34:46,471 | INFO     | sizes: {0: 2405179, 3: 2405385, 11: 2405413, 34: 2428532, 35: 2432767, 37: 2432795, 159: 2433065}
[2025-06-03 04:35:00] 2025-06-03 11:34:46,471 | INFO     | --------------------------------------------------
[2025-06-03 04:35:00] 2025-06-03 11:34:46,471 | INFO     | 
[2025-06-03 04:35:00] 2025-06-03 11:34:46,472 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-03 04:35:00] 2025-06-03 11:34:46,633 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,633 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,633 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,633 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 04:35:00] 2025-06-03 11:34:46,634 | INFO     | job 6677571444 has completed (purged errors)
[2025-06-03 04:35:00] 2025-06-03 11:34:46,635 | INFO     | overall cleanup function is called
[2025-06-03 04:35:00] 2025-06-03 11:34:47,642 | INFO     | --- collectZombieJob: --- 10, [998359]
[2025-06-03 04:35:00] 2025-06-03 11:34:47,642 | INFO     | zombie collector waiting for pid 998359
[2025-06-03 04:35:00] 2025-06-03 11:34:47,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 04:35:00] 2025-06-03 11:34:47,642 | INFO     | collected zombie processes
[2025-06-03 04:35:00] 2025-06-03 11:34:47,642 | INFO     | will attempt to kill all subprocesses of pid=998359
[2025-06-03 04:35:00] 2025-06-03 11:34:47,909 | INFO     | process IDs to be killed: [998359] (in reverse order)
[2025-06-03 04:35:00] 2025-06-03 11:34:47,978 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 04:35:00] 2025-06-03 11:34:47,978 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 04:35:00] 2025-06-03 11:34:48,011 | INFO     | did not find any defunct processes belonging to 998359
[2025-06-03 04:35:00] 2025-06-03 11:34:48,018 | INFO     | did not find any defunct processes belonging to 998359
[2025-06-03 04:35:00] 2025-06-03 11:34:48,018 | INFO     | ready for new job
[2025-06-03 04:35:00] 2025-06-03 11:34:48,018 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 04:35:00] 2025-06-03 11:34:48,020 | INFO     | **************************************
[2025-06-03 04:35:00] 2025-06-03 11:34:48,020 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 04:35:00] 2025-06-03 11:34:48,020 | INFO     | **************************************
[2025-06-03 04:35:00] 2025-06-03 11:34:48,020 | INFO     | 
[2025-06-03 04:35:00] 2025-06-03 11:34:48,022 | INFO     | architecture information:
[2025-06-03 04:35:00] 2025-06-03 11:34:48,023 | INFO     | executing command: cat /etc/os-release
[2025-06-03 04:35:00] 2025-06-03 11:34:48,036 | INFO     | cat /etc/os-release:
[2025-06-03 04:35:00] NAME="CentOS Linux"
[2025-06-03 04:35:00] VERSION="7 (Core)"
[2025-06-03 04:35:00] ID="centos"
[2025-06-03 04:35:00] ID_LIKE="rhel fedora"
[2025-06-03 04:35:00] VERSION_ID="7"
[2025-06-03 04:35:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 04:35:00] ANSI_COLOR="0;31"
[2025-06-03 04:35:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 04:35:00] HOME_URL="https://www.centos.org/"
[2025-06-03 04:35:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 04:35:00] 
[2025-06-03 04:35:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 04:35:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 04:35:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 04:35:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 04:35:00] 
[2025-06-03 04:35:00] 2025-06-03 11:34:48,036 | INFO     | **************************************
[2025-06-03 04:35:00] 2025-06-03 11:34:48,540 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-03 04:35:00] 2025-06-03 11:34:48,568 | INFO     | sufficient remaining disk space (1931179196416 B)
[2025-06-03 04:35:00] 2025-06-03 11:34:48,569 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 04:35:00] 2025-06-03 11:34:48,569 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 04:35:00] 2025-06-03 11:34:48,569 | INFO     | update_server=False
[2025-06-03 04:35:00] 2025-06-03 11:34:48,569 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 04:35:00] 2025-06-03 11:34:48,569 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 04:35:00] 2025-06-03 11:34:48,569 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 04:35:00] 2025-06-03 11:34:48,570 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 04:35:00] 2025-06-03 11:34:48,570 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 04:35:00] 2025-06-03 11:34:48,571 | INFO     | all payload control threads have been joined
[2025-06-03 04:35:00] 2025-06-03 11:34:48,572 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 04:35:00] 2025-06-03 11:34:49,056 | INFO     | all data control threads have been joined
[2025-06-03 04:35:00] 2025-06-03 11:34:49,387 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 04:35:00] 2025-06-03 11:34:49,387 | INFO     | aborting loop
[2025-06-03 04:35:00] 2025-06-03 11:34:49,575 | INFO     | [job] retrieve thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:49,577 | INFO     | [payload] control thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:49,669 | INFO     | all job control threads have been joined
[2025-06-03 04:35:00] 2025-06-03 11:34:49,738 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:49,832 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:49,896 | INFO     | [payload] validate_post thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:49,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 04:35:00] 2025-06-03 11:34:49,967 | INFO     | [job] validate thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:50,061 | INFO     | [data] control thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:50,062 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:50,204 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:50,393 | INFO     | [job] job monitor thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:50,562 | INFO     | [data] copytool_in thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:50,572 | INFO     | [payload] failed_post thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:50,675 | INFO     | [job] control thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:51,488 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 04:35:00] 2025-06-03 11:34:51,955 | INFO     | [data] copytool_out thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:52,494 | INFO     | [job] queue monitor thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:52,581 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 04:35:00] 2025-06-03 11:34:54,274 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140251436472128)>', '<ExcThread(monitor, started 140250680653568)>']
[2025-06-03 04:35:00] 2025-06-03 11:34:54,611 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 04:35:00] 2025-06-03 11:34:54,611 | INFO     | [monitor] control thread has ended
[2025-06-03 04:35:00] 2025-06-03 11:34:59,300 | INFO     | all workflow threads have been joined
[2025-06-03 04:35:00] 2025-06-03 11:34:59,300 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 04:35:00] 2025-06-03 11:34:59,300 | INFO     | traces error code: 0
[2025-06-03 04:35:00] 2025-06-03 11:34:59,300 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 04:35:00] 2025-06-03 11:34:59,826 [wrapper] ==== pilot stdout END ====
[2025-06-03 04:35:00] 2025-06-03 11:34:59,837 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 04:35:00] 2025-06-03 11:34:59,840 [wrapper] pilotpid: 989670
[2025-06-03 04:35:00] 2025-06-03 11:34:59,842 [wrapper] Pilot exit status: 0
[2025-06-03 04:35:00] 2025-06-03 11:34:59,884 [wrapper] pandaids: 6677571444
[2025-06-03 04:35:00] 2025-06-03 11:35:00,044 [wrapper] cleanup supervisor_pilot  989683 989671
[2025-06-03 04:35:00] 2025-06-03 11:35:00,046 [wrapper] Test setup, not cleaning
[2025-06-03 04:35:00] 2025-06-03 11:35:00,049 [wrapper] apfmon messages muted
[2025-06-03 04:35:00] 2025-06-03 11:35:00,052 [wrapper] ==== wrapper stdout END ====
[2025-06-03 04:35:00] 2025-06-03 11:35:00,054 [wrapper] ==== wrapper stderr END ====
[2025-06-03 04:35:00]  *** Error codes and diagnostics ***
[2025-06-03 04:35:00]     "exeErrorCode": 65,
[2025-06-03 04:35:00]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 04:35:00]     "pilotErrorCode": 1305,
[2025-06-03 04:35:00]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 04:35:00]  *** Listing of results directory ***
[2025-06-03 04:35:00] total 213088
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc    495897 Jun  3 02:56 pilot3.tar.gz
[2025-06-03 04:35:00] -rwx------. 1 boinc boinc     37140 Jun  3 03:01 runpilot2-wrapper.sh
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc      5111 Jun  3 03:01 queuedata.json
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc       100 Jun  3 04:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 04:35:00] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 04:31 run_atlas
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc       105 Jun  3 04:31 job.xml
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc      6601 Jun  3 04:31 init_data.xml
[2025-06-03 04:35:00] -rw-r--r--. 2 boinc boinc 214176689 Jun  3 04:31 EVNT.45006593._001121.pool.root.1
[2025-06-03 04:35:00] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:31 start_atlas.sh
[2025-06-03 04:35:00] drwxrwx--x. 2 boinc boinc      4096 Jun  3 04:31 shared
[2025-06-03 04:35:00] -rw-r--r--. 2 boinc boinc    508878 Jun  3 04:31 input.tar.gz
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc         0 Jun  3 04:31 boinc_lockfile
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc      2524 Jun  3 04:31 pandaJob.out
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc    982666 Jun  3 04:31 agis_schedconf.cvmfs.json
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc   1603667 Jun  3 04:31 agis_ddmendpoints.agis.ALL.json
[2025-06-03 04:35:00] drwx------. 4 boinc boinc      4096 Jun  3 04:31 pilot3
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc       522 Jun  3 04:32 boinc_task_state.xml
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc       954 Jun  3 04:32 memory_monitor_summary.json
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc     20488 Jun  3 04:32 log.45006595._028026.job.log.tgz.1
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc        95 Jun  3 04:33 pilot_heartbeat.json
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc      8308 Jun  3 04:34 heartbeat.json
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc      4475 Jun  3 04:34 pilotlog.txt
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc     73849 Jun  3 04:35 log.45006595._028026.job.log.1
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc      8192 Jun  3 04:35 boinc_mmap_file
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc       188 Jun  3 04:35 output.list
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc       620 Jun  3 04:35 runtime_log
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc    112640 Jun  3 04:35 result.tar.gz
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc      8484 Jun  3 04:35 runtime_log.err
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc       645 Jun  3 04:35 70xNDmcddg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm8DYKDmUWXLWo.diag
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc        22 Jun  3 04:35 wrapper_checkpoint.txt
[2025-06-03 04:35:00] -rw-r--r--. 1 boinc boinc     21470 Jun  3 04:35 stderr.txt
[2025-06-03 04:35:00] No HITS result produced
[2025-06-03 04:35:00]  *** Contents of shared directory: ***
[2025-06-03 04:35:00] total 209792
[2025-06-03 04:35:00] -rw-r--r--. 2 boinc boinc 214176689 Jun  3 04:31 ATLAS.root_0
[2025-06-03 04:35:00] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:31 start_atlas.sh
[2025-06-03 04:35:00] -rw-r--r--. 2 boinc boinc    508878 Jun  3 04:31 input.tar.gz
[2025-06-03 04:35:00] -rw-------. 1 boinc boinc    112640 Jun  3 04:35 result.tar.gz
04:35:02 (985531): run_atlas exited; CPU time 20.201045
04:35:02 (985531): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN