Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:48:32 (13589): wrapper (7.7.26015): starting
06:48:32 (13589): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 06:48:32] Arguments: --nthreads 8
[2025-06-03 06:48:32] Threads: 8
[2025-06-03 06:48:32] Checking for CVMFS
[2025-06-03 06:48:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 06:48:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 06:48:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 06:48:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 06:48:32] 2.11.2.0 3129 9898 68660 146739 1 58 18615007 20275201 1 130560 0 3322293 99.985 1608424 32468 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 06:48:32] CVMFS is ok
[2025-06-03 06:48:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 06:48:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 06:48:32] Further information can be found at the LHC@home message board.
[2025-06-03 06:48:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 06:48:32] Checking for apptainer binary...
[2025-06-03 06:48:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 06:48:32] Running /usr/bin/apptainer --version
[2025-06-03 06:48:32] apptainer version 1.3.2-1.el7
[2025-06-03 06:48:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 06:48:34] c-204-31.aglt2.org
[2025-06-03 06:48:34] apptainer works
[2025-06-03 06:48:34] Set ATHENA_PROC_NUMBER=8
[2025-06-03 06:48:34] Set ATHENA_CORE_NUMBER=8
[2025-06-03 06:48:34] Starting ATLAS job with PandaID=6677521417
[2025-06-03 06:48:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:13:41 (13860): wrapper (7.7.26015): starting
07:13:41 (13860): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 07:13:41] Arguments: --nthreads 8
[2025-06-03 07:13:41] Threads: 8
[2025-06-03 07:13:41] This job has been restarted, cleaning up previous attempt
[2025-06-03 07:13:41] Checking for CVMFS
[2025-06-03 07:13:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 07:13:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 07:13:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 07:13:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 07:13:41] 2.11.2.0 3129 9923 73288 146740 3 1 18627358 20275201 1 130560 0 3384618 99.985 1609799 32470 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 07:13:41] CVMFS is ok
[2025-06-03 07:13:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 07:13:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 07:13:41] Further information can be found at the LHC@home message board.
[2025-06-03 07:13:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 07:13:41] Checking for apptainer binary...
[2025-06-03 07:13:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 07:13:41] Running /usr/bin/apptainer --version
[2025-06-03 07:13:42] apptainer version 1.3.2-1.el7
[2025-06-03 07:13:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:13:43] c-204-31.aglt2.org
[2025-06-03 07:13:43] apptainer works
[2025-06-03 07:13:43] Set ATHENA_PROC_NUMBER=8
[2025-06-03 07:13:43] Set ATHENA_CORE_NUMBER=8
[2025-06-03 07:13:43] Starting ATLAS job with PandaID=6677521417
[2025-06-03 07:13:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 09:05:04]  *** The last 200 lines of the pilot log: ***
[2025-06-03 09:05:04] 2025-06-03 13:04:51,452 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677521417/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 09:05:04] 2025-06-03 13:04:51,453 | INFO     | extracted standard info from prmon json
[2025-06-03 09:05:04] 2025-06-03 13:04:51,453 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 09:05:04] 2025-06-03 13:04:51,453 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 09:05:04] 2025-06-03 13:04:51,454 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 09:05:04] 2025-06-03 13:04:51,454 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 09:05:04] 2025-06-03 13:04:51,458 | INFO     | fitting pss+swap vs Time
[2025-06-03 09:05:04] 2025-06-03 13:04:51,458 | INFO     | sum of square deviations: 401533110.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,459 | INFO     | sum of deviations: 8864616990.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,459 | INFO     | mean x: 1748952567.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,459 | INFO     | mean y: 2471460.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,460 | INFO     | -- intersect: -38609025958.31331
[2025-06-03 09:05:04] 2025-06-03 13:04:51,460 | INFO     | intersect: -38609025958.31331
[2025-06-03 09:05:04] 2025-06-03 13:04:51,460 | INFO     | chi2: 2.3213859267099806
[2025-06-03 09:05:04] 2025-06-03 13:04:51,461 | INFO     | sum of square deviations: 348769330.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,461 | INFO     | sum of deviations: 15743026979.5
[2025-06-03 09:05:04] 2025-06-03 13:04:51,461 | INFO     | mean x: 1748952414.5
[2025-06-03 09:05:04] 2025-06-03 13:04:51,461 | INFO     | mean y: 2490570.528846154
[2025-06-03 09:05:04] 2025-06-03 13:04:51,462 | INFO     | -- intersect: -78943112379.52176
[2025-06-03 09:05:04] 2025-06-03 13:04:51,462 | INFO     | intersect: -78943112379.52176
[2025-06-03 09:05:04] 2025-06-03 13:04:51,462 | INFO     | chi2: 1.5518906963285164
[2025-06-03 09:05:04] 2025-06-03 13:04:51,462 | INFO     | current chi2=1.5518906963285164 (change=33.14809577880241 %)
[2025-06-03 09:05:04] 2025-06-03 13:04:51,462 | INFO     | sum of square deviations: 300842850.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,463 | INFO     | sum of deviations: 15305216651.000002
[2025-06-03 09:05:04] 2025-06-03 13:04:51,463 | INFO     | mean x: 1748952262.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,463 | INFO     | mean y: 2489176.373737374
[2025-06-03 09:05:04] 2025-06-03 13:04:51,463 | INFO     | -- intersect: -88974507558.52132
[2025-06-03 09:05:04] 2025-06-03 13:04:51,464 | INFO     | intersect: -88974507558.52132
[2025-06-03 09:05:04] 2025-06-03 13:04:51,464 | INFO     | chi2: 1.551730061831571
[2025-06-03 09:05:04] 2025-06-03 13:04:51,464 | INFO     | current chi2=1.551730061831571 (change=0.010350889874228757 %)
[2025-06-03 09:05:04] 2025-06-03 13:04:51,464 | INFO     | right removable region: 98
[2025-06-03 09:05:04] 2025-06-03 13:04:51,464 | INFO     | sum of square deviations: 348769330.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,465 | INFO     | sum of deviations: -8529601574.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,465 | INFO     | mean x: 1748952719.5
[2025-06-03 09:05:04] 2025-06-03 13:04:51,465 | INFO     | mean y: 2520851.9615384615
[2025-06-03 09:05:04] 2025-06-03 13:04:51,465 | INFO     | -- intersect: 42775404204.68863
[2025-06-03 09:05:04] 2025-06-03 13:04:51,466 | INFO     | intersect: 42775404204.68863
[2025-06-03 09:05:04] 2025-06-03 13:04:51,466 | INFO     | chi2: 0.8521939508373733
[2025-06-03 09:05:04] 2025-06-03 13:04:51,466 | INFO     | current chi2=0.8521939508373733 (change=63.2894323588341 %)
[2025-06-03 09:05:04] 2025-06-03 13:04:51,466 | INFO     | sum of square deviations: 300842850.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,467 | INFO     | sum of deviations: -10720307140.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,467 | INFO     | mean x: 1748952872.0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,467 | INFO     | mean y: 2527639.373737374
[2025-06-03 09:05:04] 2025-06-03 13:04:51,467 | INFO     | -- intersect: 62325138800.73292
[2025-06-03 09:05:04] 2025-06-03 13:04:51,467 | INFO     | intersect: 62325138800.73292
[2025-06-03 09:05:04] 2025-06-03 13:04:51,468 | INFO     | chi2: 0.8079963764295492
[2025-06-03 09:05:04] 2025-06-03 13:04:51,468 | INFO     | current chi2=0.8079963764295492 (change=5.186328108102045 %)
[2025-06-03 09:05:04] 2025-06-03 13:04:51,468 | INFO     | left removable region: 20
[2025-06-03 09:05:04] 2025-06-03 13:04:51,468 | INFO     | sum of square deviations: 147126479.5
[2025-06-03 09:05:04] 2025-06-03 13:04:51,469 | INFO     | sum of deviations: -2823770794.499999
[2025-06-03 09:05:04] 2025-06-03 13:04:51,469 | INFO     | mean x: 1748952841.5
[2025-06-03 09:05:04] 2025-06-03 13:04:51,469 | INFO     | mean y: 2553050.064102564
[2025-06-03 09:05:04] 2025-06-03 13:04:51,469 | INFO     | -- intersect: 33569875340.172226
[2025-06-03 09:05:04] 2025-06-03 13:04:51,469 | INFO     | intersect: 33569875340.172226
[2025-06-03 09:05:04] 2025-06-03 13:04:51,469 | INFO     | chi2: 0.006074776066846534
[2025-06-03 09:05:04] 2025-06-03 13:04:51,469 | INFO     | -- intersect: 33569875340.172226
[2025-06-03 09:05:04] 2025-06-03 13:04:51,470 | INFO     | current memory leak: -19.19 B/s (using 78 data points, chi2=0.01)
[2025-06-03 09:05:04] 2025-06-03 13:04:51,470 | INFO     | ..............................
[2025-06-03 09:05:04] 2025-06-03 13:04:51,470 | INFO     | . Timing measurements:
[2025-06-03 09:05:04] 2025-06-03 13:04:51,470 | INFO     | . get job = 0 s
[2025-06-03 09:05:04] 2025-06-03 13:04:51,470 | INFO     | . initial setup = 1 s
[2025-06-03 09:05:04] 2025-06-03 13:04:51,471 | INFO     | . payload setup = 12 s
[2025-06-03 09:05:04] 2025-06-03 13:04:51,471 | INFO     | . stage-in = 0 s
[2025-06-03 09:05:04] 2025-06-03 13:04:51,471 | INFO     | . payload execution = 6608 s
[2025-06-03 09:05:04] 2025-06-03 13:04:51,471 | INFO     | . stage-out = 0 s
[2025-06-03 09:05:04] 2025-06-03 13:04:51,471 | INFO     | . log creation = 0 s
[2025-06-03 09:05:04] 2025-06-03 13:04:51,471 | INFO     | ..............................
[2025-06-03 09:05:04] 2025-06-03 13:04:51,826 | INFO     | 
[2025-06-03 09:05:04] 2025-06-03 13:04:51,826 | INFO     | job summary report
[2025-06-03 09:05:04] 2025-06-03 13:04:51,827 | INFO     | --------------------------------------------------
[2025-06-03 09:05:04] 2025-06-03 13:04:51,827 | INFO     | PanDA job id: 6677521417
[2025-06-03 09:05:04] 2025-06-03 13:04:51,827 | INFO     | task id: 45006595
[2025-06-03 09:05:04] 2025-06-03 13:04:51,827 | INFO     | errors: (none)
[2025-06-03 09:05:04] 2025-06-03 13:04:51,827 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 09:05:04] 2025-06-03 13:04:51,828 | INFO     | pilot state: finished 
[2025-06-03 09:05:04] 2025-06-03 13:04:51,828 | INFO     | transexitcode: 0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,828 | INFO     | exeerrorcode: 0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,828 | INFO     | exeerrordiag: 
[2025-06-03 09:05:04] 2025-06-03 13:04:51,828 | INFO     | exitcode: 0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,828 | INFO     | exitmsg: OK
[2025-06-03 09:05:04] 2025-06-03 13:04:51,829 | INFO     | cpuconsumptiontime: 49178 s
[2025-06-03 09:05:04] 2025-06-03 13:04:51,829 | INFO     | nevents: 400
[2025-06-03 09:05:04] 2025-06-03 13:04:51,829 | INFO     | neventsw: 0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,829 | INFO     | pid: 24002
[2025-06-03 09:05:04] 2025-06-03 13:04:51,829 | INFO     | pgrp: 24002
[2025-06-03 09:05:04] 2025-06-03 13:04:51,829 | INFO     | corecount: 8
[2025-06-03 09:05:04] 2025-06-03 13:04:51,829 | INFO     | event service: False
[2025-06-03 09:05:04] 2025-06-03 13:04:51,830 | INFO     | sizes: {0: 2405185, 6: 2405391, 11: 2405419, 6623: 2432380, 6626: 2441321, 6628: 2441377, 6636: 2441675}
[2025-06-03 09:05:04] 2025-06-03 13:04:51,830 | INFO     | --------------------------------------------------
[2025-06-03 09:05:04] 2025-06-03 13:04:51,830 | INFO     | 
[2025-06-03 09:05:04] 2025-06-03 13:04:51,830 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 09:05:04] 2025-06-03 13:04:51,857 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,857 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,857 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,857 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,858 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,858 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,858 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,858 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,859 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,859 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,859 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,859 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,859 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,859 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,860 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,860 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,860 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 09:05:04] 2025-06-03 13:04:51,860 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,860 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 09:05:04] 2025-06-03 13:04:51,860 | INFO     | job 6677521417 has completed (purged errors)
[2025-06-03 09:05:04] 2025-06-03 13:04:51,861 | INFO     | overall cleanup function is called
[2025-06-03 09:05:04] 2025-06-03 13:04:52,864 | INFO     | --- collectZombieJob: --- 10, [24002]
[2025-06-03 09:05:04] 2025-06-03 13:04:52,864 | INFO     | zombie collector waiting for pid 24002
[2025-06-03 09:05:04] 2025-06-03 13:04:52,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 09:05:04] 2025-06-03 13:04:52,872 | INFO     | collected zombie processes
[2025-06-03 09:05:04] 2025-06-03 13:04:52,872 | INFO     | will attempt to kill all subprocesses of pid=24002
[2025-06-03 09:05:04] 2025-06-03 13:04:52,966 | INFO     | process IDs to be killed: [24002] (in reverse order)
[2025-06-03 09:05:04] 2025-06-03 13:04:53,030 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 09:05:04] 2025-06-03 13:04:53,031 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 09:05:04] 2025-06-03 13:04:53,035 | INFO     | did not find any defunct processes belonging to 24002
[2025-06-03 09:05:04] 2025-06-03 13:04:53,039 | INFO     | did not find any defunct processes belonging to 24002
[2025-06-03 09:05:04] 2025-06-03 13:04:53,039 | INFO     | ready for new job
[2025-06-03 09:05:04] 2025-06-03 13:04:53,039 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 09:05:04] 2025-06-03 13:04:53,041 | INFO     | **************************************
[2025-06-03 09:05:04] 2025-06-03 13:04:53,041 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 09:05:04] 2025-06-03 13:04:53,041 | INFO     | **************************************
[2025-06-03 09:05:04] 2025-06-03 13:04:53,041 | INFO     | 
[2025-06-03 09:05:04] 2025-06-03 13:04:53,042 | INFO     | architecture information:
[2025-06-03 09:05:04] 2025-06-03 13:04:53,042 | INFO     | executing command: cat /etc/os-release
[2025-06-03 09:05:04] 2025-06-03 13:04:53,058 | INFO     | cat /etc/os-release:
[2025-06-03 09:05:04] NAME="CentOS Linux"
[2025-06-03 09:05:04] VERSION="7 (Core)"
[2025-06-03 09:05:04] ID="centos"
[2025-06-03 09:05:04] ID_LIKE="rhel fedora"
[2025-06-03 09:05:04] VERSION_ID="7"
[2025-06-03 09:05:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 09:05:04] ANSI_COLOR="0;31"
[2025-06-03 09:05:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 09:05:04] HOME_URL="https://www.centos.org/"
[2025-06-03 09:05:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 09:05:04] 
[2025-06-03 09:05:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 09:05:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 09:05:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 09:05:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 09:05:04] 
[2025-06-03 09:05:04] 2025-06-03 13:04:53,059 | INFO     | **************************************
[2025-06-03 09:05:04] 2025-06-03 13:04:53,562 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 09:05:04] 2025-06-03 13:04:53,582 | INFO     | sufficient remaining disk space (18606981120 B)
[2025-06-03 09:05:04] 2025-06-03 13:04:53,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 09:05:04] 2025-06-03 13:04:53,582 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 09:05:04] 2025-06-03 13:04:53,582 | INFO     | update_server=False
[2025-06-03 09:05:04] 2025-06-03 13:04:53,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 09:05:04] 2025-06-03 13:04:53,583 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 09:05:04] 2025-06-03 13:04:53,584 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 09:05:04] 2025-06-03 13:04:53,584 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 09:05:04] 2025-06-03 13:04:53,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 09:05:04] 2025-06-03 13:04:53,704 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:05:04] 2025-06-03 13:04:53,704 | INFO     | aborting loop
[2025-06-03 09:05:04] 2025-06-03 13:04:54,311 | INFO     | all data control threads have been joined
[2025-06-03 09:05:04] 2025-06-03 13:04:54,572 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 09:05:04] 2025-06-03 13:04:54,588 | INFO     | [job] retrieve thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:54,637 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:54,710 | INFO     | [job] job monitor thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:54,720 | INFO     | all job control threads have been joined
[2025-06-03 09:05:04] 2025-06-03 13:04:54,773 | INFO     | all payload control threads have been joined
[2025-06-03 09:05:04] 2025-06-03 13:04:54,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 09:05:04] 2025-06-03 13:04:54,869 | INFO     | [payload] validate_post thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:55,061 | INFO     | [payload] failed_post thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:55,085 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:55,209 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:55,317 | INFO     | [data] control thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:55,335 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:55,344 | INFO     | [data] copytool_in thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:55,726 | INFO     | [job] control thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:55,779 | INFO     | [payload] control thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:55,884 | INFO     | [job] validate thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:56,578 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:05:04] 2025-06-03 13:04:56,579 | INFO     | [data] copytool_out thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:57,583 | INFO     | [job] queue monitor thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:58,785 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 09:05:04] 2025-06-03 13:04:59,579 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762524051264)>', '<ExcThread(monitor, started 139761549289216)>']
[2025-06-03 09:05:04] 2025-06-03 13:04:59,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 09:05:04] 2025-06-03 13:04:59,614 | INFO     | [monitor] control thread has ended
[2025-06-03 09:05:04] 2025-06-03 13:05:04,605 | INFO     | all workflow threads have been joined
[2025-06-03 09:05:04] 2025-06-03 13:05:04,605 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 09:05:04] 2025-06-03 13:05:04,606 | INFO     | traces error code: 0
[2025-06-03 09:05:04] 2025-06-03 13:05:04,606 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 09:05:04] 2025-06-03 13:05:04,728 [wrapper] ==== pilot stdout END ====
[2025-06-03 09:05:04] 2025-06-03 13:05:04,732 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 09:05:04] 2025-06-03 13:05:04,737 [wrapper] pilotpid: 17555
[2025-06-03 09:05:04] 2025-06-03 13:05:04,741 [wrapper] Pilot exit status: 0
[2025-06-03 09:05:04] 2025-06-03 13:05:04,761 [wrapper] pandaids: 6677521417 6677521417
[2025-06-03 09:05:04] 2025-06-03 13:05:04,810 [wrapper] cleanup supervisor_pilot 24834 17556
[2025-06-03 09:05:04] 2025-06-03 13:05:04,814 [wrapper] Test setup, not cleaning
[2025-06-03 09:05:04] 2025-06-03 13:05:04,819 [wrapper] apfmon messages muted
[2025-06-03 09:05:04] 2025-06-03 13:05:04,824 [wrapper] ==== wrapper stdout END ====
[2025-06-03 09:05:04] 2025-06-03 13:05:04,829 [wrapper] ==== wrapper stderr END ====
[2025-06-03 09:05:04]  *** Error codes and diagnostics ***
[2025-06-03 09:05:04]     "exeErrorCode": 0,
[2025-06-03 09:05:04]     "exeErrorDiag": "",
[2025-06-03 09:05:04]     "pilotErrorCode": 0,
[2025-06-03 09:05:04]     "pilotErrorDiag": "",
[2025-06-03 09:05:04]  *** Listing of results directory ***
[2025-06-03 09:05:04] total 605340
[2025-06-03 09:05:04] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 04:07 pilot3.tar.gz
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 04:08 queuedata.json
[2025-06-03 09:05:04] -rwx------ 1 boincer umatlas     37140 Jun  3 04:08 runpilot2-wrapper.sh
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas       100 Jun  3 06:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 09:05:04] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 06:48 run_atlas
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas       105 Jun  3 06:48 job.xml
[2025-06-03 09:05:04] -rw-r--r-- 3 boincer umatlas 218651403 Jun  3 06:48 EVNT.45006593._001004.pool.root.1
[2025-06-03 09:05:04] -rw-r--r-- 3 boincer umatlas 218651403 Jun  3 06:48 ATLAS.root_0
[2025-06-03 09:05:04] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 06:48 start_atlas.sh
[2025-06-03 09:05:04] drwxrwx--x 2 boincer umatlas      4096 Jun  3 06:48 shared
[2025-06-03 09:05:04] -rw-r--r-- 2 boincer umatlas    508885 Jun  3 06:48 input.tar.gz
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas         0 Jun  3 06:48 boinc_lockfile
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas   1603667 Jun  3 06:48 agis_ddmendpoints.agis.ALL.json
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas      2526 Jun  3 07:13 pandaJob.out
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas    984355 Jun  3 07:13 agis_schedconf.cvmfs.json
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas 176850331 Jun  3 09:04 HITS.45006595._025105.pool.root.1
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas       530 Jun  3 09:04 boinc_task_state.xml
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas        96 Jun  3 09:04 pilot_heartbeat.json
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas      5905 Jun  3 09:04 init_data.xml
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas      1047 Jun  3 09:04 memory_monitor_summary.json
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas    326481 Jun  3 09:04 log.45006595._025105.job.log.tgz.1
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas      7748 Jun  3 09:04 heartbeat.json
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 09:04 boinc_mmap_file
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas        27 Jun  3 09:04 wrapper_checkpoint.txt
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas      4476 Jun  3 09:05 pilotlog.txt
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas    613606 Jun  3 09:05 log.45006595._025105.job.log.1
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas       357 Jun  3 09:05 output.list
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas       620 Jun  3 09:05 runtime_log
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas    962560 Jun  3 09:05 result.tar.gz
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas      8744 Jun  3 09:05 runtime_log.err
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas       784 Jun  3 09:05 Bn8MDmnsbg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmwvXKDmD54YDn.diag
[2025-06-03 09:05:04] -rw-r--r-- 1 boincer umatlas     22939 Jun  3 09:05 stderr.txt
[2025-06-03 09:05:04] HITS file was successfully produced:
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas 176850331 Jun  3 09:04 shared/HITS.pool.root.1
[2025-06-03 09:05:04]  *** Contents of shared directory: ***
[2025-06-03 09:05:04] total 387696
[2025-06-03 09:05:04] -rw-r--r-- 3 boincer umatlas 218651403 Jun  3 06:48 ATLAS.root_0
[2025-06-03 09:05:04] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 06:48 start_atlas.sh
[2025-06-03 09:05:04] -rw-r--r-- 2 boincer umatlas    508885 Jun  3 06:48 input.tar.gz
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas 176850331 Jun  3 09:04 HITS.pool.root.1
[2025-06-03 09:05:04] -rw------- 1 boincer umatlas    962560 Jun  3 09:05 result.tar.gz
09:05:06 (13860): run_atlas exited; CPU time 49136.030709
09:05:06 (13860): called boinc_finish(0)

</stderr_txt>
]]>

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