Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:54:25 (24314): wrapper (7.7.26015): starting
20:54:25 (24314): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 20:54:25] Arguments: --nthreads 8
[2025-06-03 20:54:25] Threads: 8
[2025-06-03 20:54:25] Checking for CVMFS
[2025-06-03 20:54:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:54:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:54:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:54:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:54:26] 2.11.2.0 4277 32142 96800 146750 1 249 16888095 25165824 3574 130560 0 15942408 99.770 17830852 2115 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 20:54:26] CVMFS is ok
[2025-06-03 20:54:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:54:26] Checking for apptainer binary...
[2025-06-03 20:54:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:54:26] Running /usr/bin/apptainer --version
[2025-06-03 20:54:26] apptainer version 1.3.2-1.el7
[2025-06-03 20:54:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:54:28] cg-vwn279.simple-grid.lan
[2025-06-03 20:54:28] apptainer works
[2025-06-03 20:54:28] Set ATHENA_PROC_NUMBER=8
[2025-06-03 20:54:28] Set ATHENA_CORE_NUMBER=8
[2025-06-03 20:54:28] Starting ATLAS job with PandaID=6677473765
[2025-06-03 20:54:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 00:48:14]  *** The last 200 lines of the pilot log: ***
[2025-06-04 00:48:14] 2025-06-03 22:44:42,310 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6677473765/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 00:48:14] 2025-06-03 22:44:42,311 | INFO     | extracted standard info from prmon json
[2025-06-04 00:48:14] 2025-06-03 22:44:42,311 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 00:48:14] 2025-06-03 22:44:42,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 00:48:14] 2025-06-03 22:44:42,312 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 00:48:14] 2025-06-03 22:44:42,312 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 00:48:14] 2025-06-03 22:44:42,316 | INFO     | fitting pss+swap vs Time
[2025-06-04 00:48:14] 2025-06-03 22:44:42,317 | INFO     | sum of square deviations: 3485088600.0
[2025-06-04 00:48:14] 2025-06-03 22:44:42,319 | INFO     | sum of deviations: 3681009589.499998
[2025-06-04 00:48:14] 2025-06-03 22:44:42,319 | INFO     | mean x: 1748983756.5
[2025-06-04 00:48:14] 2025-06-03 22:44:42,319 | INFO     | mean y: 2472925.254464286
[2025-06-04 00:48:14] 2025-06-03 22:44:42,319 | INFO     | -- intersect: -1844833332.484931
[2025-06-04 00:48:14] 2025-06-03 22:44:42,319 | INFO     | intersect: -1844833332.484931
[2025-06-04 00:48:14] 2025-06-03 22:44:42,320 | INFO     | chi2: 2.643456932200598
[2025-06-04 00:48:14] 2025-06-03 22:44:42,320 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 00:48:14] 2025-06-03 22:44:42,327 | INFO     | sum of deviations: 18274028030.000008
[2025-06-04 00:48:14] 2025-06-03 22:44:42,328 | INFO     | mean x: 1748983604.0
[2025-06-04 00:48:14] 2025-06-03 22:44:42,328 | INFO     | mean y: 2482498.7488584477
[2025-06-04 00:48:14] 2025-06-03 22:44:42,328 | INFO     | -- intersect: -9810890619.671091
[2025-06-04 00:48:14] 2025-06-03 22:44:42,328 | INFO     | intersect: -9810890619.671091
[2025-06-04 00:48:14] 2025-06-03 22:44:42,328 | INFO     | chi2: 1.8781388623373696
[2025-06-04 00:48:14] 2025-06-03 22:44:42,328 | INFO     | current chi2=1.8781388623373696 (change=28.951410576836 %)
[2025-06-04 00:48:14] 2025-06-03 22:44:42,329 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 00:48:14] 2025-06-03 22:44:42,330 | INFO     | sum of deviations: 17864588313.5
[2025-06-04 00:48:14] 2025-06-03 22:44:42,331 | INFO     | mean x: 1748983451.5
[2025-06-04 00:48:14] 2025-06-03 22:44:42,331 | INFO     | mean y: 2482212.2476635515
[2025-06-04 00:48:14] 2025-06-03 22:44:42,331 | INFO     | -- intersect: -10279301221.297226
[2025-06-04 00:48:14] 2025-06-03 22:44:42,331 | INFO     | intersect: -10279301221.297226
[2025-06-04 00:48:14] 2025-06-03 22:44:42,331 | INFO     | chi2: 1.8793167424581134
[2025-06-04 00:48:14] 2025-06-03 22:44:42,331 | INFO     | current chi2=1.8793167424581134 (change=-0.06271528396350501 %)
[2025-06-04 00:48:14] 2025-06-03 22:44:42,331 | INFO     | right removable region: 213
[2025-06-04 00:48:14] 2025-06-03 22:44:42,332 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 00:48:14] 2025-06-03 22:44:42,334 | INFO     | sum of deviations: -36659320975.00001
[2025-06-04 00:48:14] 2025-06-03 22:44:42,334 | INFO     | mean x: 1748983909.0
[2025-06-04 00:48:14] 2025-06-03 22:44:42,334 | INFO     | mean y: 2499662.4566210047
[2025-06-04 00:48:14] 2025-06-03 22:44:42,334 | INFO     | -- intersect: 19688999931.636414
[2025-06-04 00:48:14] 2025-06-03 22:44:42,334 | INFO     | intersect: 19688999931.636414
[2025-06-04 00:48:14] 2025-06-03 22:44:42,334 | INFO     | chi2: 0.9292050013834138
[2025-06-04 00:48:14] 2025-06-03 22:44:42,334 | INFO     | current chi2=0.9292050013834138 (change=64.84886929442506 %)
[2025-06-04 00:48:14] 2025-06-03 22:44:42,335 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 00:48:14] 2025-06-03 22:44:42,337 | INFO     | sum of deviations: -31877555222.5
[2025-06-04 00:48:14] 2025-06-03 22:44:42,337 | INFO     | mean x: 1748984061.5
[2025-06-04 00:48:14] 2025-06-03 22:44:42,337 | INFO     | mean y: 2496290.004672897
[2025-06-04 00:48:14] 2025-06-03 22:44:42,337 | INFO     | -- intersect: 18349307744.621273
[2025-06-04 00:48:14] 2025-06-03 22:44:42,337 | INFO     | intersect: 18349307744.621273
[2025-06-04 00:48:14] 2025-06-03 22:44:42,337 | INFO     | chi2: 0.9129947530218832
[2025-06-04 00:48:14] 2025-06-03 22:44:42,338 | INFO     | current chi2=0.9129947530218832 (change=1.7445287463365533 %)
[2025-06-04 00:48:14] 2025-06-03 22:44:42,338 | INFO     | left removable region: 20
[2025-06-04 00:48:14] 2025-06-03 22:44:42,338 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 00:48:14] 2025-06-03 22:44:42,339 | INFO     | sum of deviations: -1949383526.999999
[2025-06-04 00:48:14] 2025-06-03 22:44:42,340 | INFO     | mean x: 1748984031.0
[2025-06-04 00:48:14] 2025-06-03 22:44:42,340 | INFO     | mean y: 2494884.8808290157
[2025-06-04 00:48:14] 2025-06-03 22:44:42,340 | INFO     | -- intersect: 1531977145.8586357
[2025-06-04 00:48:14] 2025-06-03 22:44:42,340 | INFO     | intersect: 1531977145.8586357
[2025-06-04 00:48:14] 2025-06-03 22:44:42,340 | INFO     | chi2: 0.04666571102443208
[2025-06-04 00:48:14] 2025-06-03 22:44:42,340 | INFO     | -- intersect: 1531977145.8586357
[2025-06-04 00:48:14] 2025-06-03 22:44:42,341 | INFO     | current memory leak: -0.87 B/s (using 193 data points, chi2=0.05)
[2025-06-04 00:48:14] 2025-06-03 22:44:42,341 | INFO     | ..............................
[2025-06-04 00:48:14] 2025-06-03 22:44:42,342 | INFO     | . Timing measurements:
[2025-06-04 00:48:14] 2025-06-03 22:44:42,342 | INFO     | . get job = 0 s
[2025-06-04 00:48:14] 2025-06-03 22:44:42,342 | INFO     | . initial setup = 3 s
[2025-06-04 00:48:14] 2025-06-03 22:44:42,342 | INFO     | . payload setup = 13 s
[2025-06-04 00:48:14] 2025-06-03 22:44:42,342 | INFO     | . stage-in = 0 s
[2025-06-04 00:48:14] 2025-06-03 22:44:42,342 | INFO     | . payload execution = 13658 s
[2025-06-04 00:48:14] 2025-06-03 22:44:42,342 | INFO     | . stage-out = 3 s
[2025-06-04 00:48:14] 2025-06-03 22:44:42,342 | INFO     | . log creation = 1 s
[2025-06-04 00:48:14] 2025-06-03 22:44:42,342 | INFO     | ..............................
[2025-06-04 00:48:14] 2025-06-03 22:44:42,633 | INFO     | 
[2025-06-04 00:48:14] 2025-06-03 22:44:42,633 | INFO     | job summary report
[2025-06-04 00:48:14] 2025-06-03 22:44:42,633 | INFO     | --------------------------------------------------
[2025-06-04 00:48:14] 2025-06-03 22:44:42,633 | INFO     | PanDA job id: 6677473765
[2025-06-04 00:48:14] 2025-06-03 22:44:42,633 | INFO     | task id: 45006595
[2025-06-04 00:48:14] 2025-06-03 22:44:42,633 | INFO     | errors: (none)
[2025-06-04 00:48:14] 2025-06-03 22:44:42,633 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 00:48:14] 2025-06-03 22:44:42,633 | INFO     | pilot state: finished 
[2025-06-04 00:48:14] 2025-06-03 22:44:42,634 | INFO     | transexitcode: 0
[2025-06-04 00:48:14] 2025-06-03 22:44:42,634 | INFO     | exeerrorcode: 0
[2025-06-04 00:48:14] 2025-06-03 22:44:42,634 | INFO     | exeerrordiag: 
[2025-06-04 00:48:14] 2025-06-03 22:44:42,634 | INFO     | exitcode: 0
[2025-06-04 00:48:14] 2025-06-03 22:44:42,634 | INFO     | exitmsg: OK
[2025-06-04 00:48:14] 2025-06-03 22:44:42,634 | INFO     | cpuconsumptiontime: 49994 s
[2025-06-04 00:48:14] 2025-06-03 22:44:42,634 | INFO     | nevents: 400
[2025-06-04 00:48:14] 2025-06-03 22:44:42,634 | INFO     | neventsw: 0
[2025-06-04 00:48:14] 2025-06-03 22:44:42,634 | INFO     | pid: 4174
[2025-06-04 00:48:14] 2025-06-03 22:44:42,634 | INFO     | pgrp: 4174
[2025-06-04 00:48:14] 2025-06-03 22:44:42,635 | INFO     | corecount: 8
[2025-06-04 00:48:14] 2025-06-03 22:44:42,635 | INFO     | event service: False
[2025-06-04 00:48:14] 2025-06-03 22:44:42,635 | INFO     | sizes: {0: 2404354, 1: 2405040, 2: 2405239, 12: 2405445, 13: 2405473, 13676: 2435247, 13682: 2444246, 13767: 2444360}
[2025-06-04 00:48:14] 2025-06-03 22:44:42,635 | INFO     | --------------------------------------------------
[2025-06-04 00:48:14] 2025-06-03 22:44:42,635 | INFO     | 
[2025-06-04 00:48:14] 2025-06-03 22:44:42,635 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-04 00:48:14] 2025-06-03 22:44:43,286 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,286 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,286 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,287 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,287 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,287 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,287 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,287 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,287 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,287 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,287 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,288 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,288 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,288 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,288 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,288 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,288 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,288 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 00:48:14] 2025-06-03 22:44:43,288 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,288 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 00:48:14] 2025-06-03 22:44:43,288 | INFO     | job 6677473765 has completed (purged errors)
[2025-06-04 00:48:14] 2025-06-03 22:44:43,289 | INFO     | overall cleanup function is called
[2025-06-04 00:48:14] 2025-06-03 22:44:44,297 | INFO     | --- collectZombieJob: --- 10, [4174]
[2025-06-04 00:48:14] 2025-06-03 22:44:44,298 | INFO     | zombie collector waiting for pid 4174
[2025-06-04 00:48:14] 2025-06-03 22:44:44,298 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 00:48:14] 2025-06-03 22:44:44,298 | INFO     | collected zombie processes
[2025-06-04 00:48:14] 2025-06-03 22:44:44,298 | INFO     | will attempt to kill all subprocesses of pid=4174
[2025-06-04 00:48:14] 2025-06-03 22:44:44,446 | INFO     | process IDs to be killed: [4174] (in reverse order)
[2025-06-04 00:48:14] 2025-06-03 22:44:45,260 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 00:48:14] 2025-06-03 22:44:45,261 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 00:48:14] 2025-06-03 22:44:45,264 | INFO     | did not find any defunct processes belonging to 4174
[2025-06-04 00:48:14] 2025-06-03 22:44:45,267 | INFO     | did not find any defunct processes belonging to 4174
[2025-06-04 00:48:14] 2025-06-03 22:44:45,268 | INFO     | ready for new job
[2025-06-04 00:48:14] 2025-06-03 22:44:45,268 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 00:48:14] 2025-06-03 22:44:45,275 | INFO     | **************************************
[2025-06-04 00:48:14] 2025-06-03 22:44:45,275 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 00:48:14] 2025-06-03 22:44:45,276 | INFO     | **************************************
[2025-06-04 00:48:14] 2025-06-03 22:44:45,276 | INFO     | 
[2025-06-04 00:48:14] 2025-06-03 22:44:45,276 | INFO     | pilot is running in a VM
[2025-06-04 00:48:14] 2025-06-03 22:44:45,277 | INFO     | architecture information:
[2025-06-04 00:48:14] 2025-06-03 22:44:45,293 | INFO     | executing command: cat /etc/os-release
[2025-06-04 00:48:14] 2025-06-03 22:44:45,595 | INFO     | cat /etc/os-release:
[2025-06-04 00:48:14] NAME="CentOS Linux"
[2025-06-04 00:48:14] VERSION="7 (Core)"
[2025-06-04 00:48:14] ID="centos"
[2025-06-04 00:48:14] ID_LIKE="rhel fedora"
[2025-06-04 00:48:14] VERSION_ID="7"
[2025-06-04 00:48:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 00:48:14] ANSI_COLOR="0;31"
[2025-06-04 00:48:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 00:48:14] HOME_URL="https://www.centos.org/"
[2025-06-04 00:48:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 00:48:14] 
[2025-06-04 00:48:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 00:48:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 00:48:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 00:48:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 00:48:14] 
[2025-06-04 00:48:14] 2025-06-03 22:44:45,596 | INFO     | **************************************
[2025-06-04 00:48:14] 2025-06-03 22:44:46,101 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-04 00:48:14] 2025-06-03 22:44:46,380 | INFO     | sufficient remaining disk space (497006149632 B)
[2025-06-04 00:48:14] 2025-06-03 22:44:46,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 00:48:14] 2025-06-03 22:44:46,380 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 00:48:14] 2025-06-03 22:44:46,380 | INFO     | update_server=False
[2025-06-04 00:48:14] 2025-06-03 22:44:46,380 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 00:48:14] 2025-06-03 22:44:46,382 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:48:14] 2025-06-03 22:44:46,382 | INFO     | aborting loop
[2025-06-04 00:48:14] 2025-06-03 22:44:46,437 | INFO     | all data control threads have been joined
[2025-06-04 00:48:14] 2025-06-03 22:44:46,682 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 00:48:14] 2025-06-03 22:44:46,682 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 00:48:14] 2025-06-03 22:44:46,682 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 00:48:14] 2025-06-03 22:44:47,001 | INFO     | all payload control threads have been joined
[2025-06-04 00:48:14] 2025-06-03 22:44:47,387 | INFO     | [job] retrieve thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:47,388 | INFO     | [job] job monitor thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:47,439 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:47,443 | INFO     | [data] control thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:47,515 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:48:14] 2025-06-03 22:44:47,516 | INFO     | [payload] validate_post thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:47,518 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:47,694 | INFO     | [payload] failed_post thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:47,729 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 00:48:14] 2025-06-03 22:44:47,903 | INFO     | all job control threads have been joined
[2025-06-04 00:48:14] 2025-06-03 22:44:48,008 | INFO     | [payload] control thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:48,262 | INFO     | [data] copytool_in thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:48,327 | INFO     | [job] validate thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:48,522 | INFO     | [job] queue monitor thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:48,633 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:48,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 00:48:14] 2025-06-03 22:44:48,759 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:48,910 | INFO     | [job] control thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:49,736 | INFO     | [data] copytool_out thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:52,741 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 00:48:14] 2025-06-03 22:44:53,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642554042176)>', '<ExcThread(monitor, started 139642103904000)>']
[2025-06-04 00:48:14] 2025-06-03 22:44:54,729 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 00:48:14] 2025-06-03 22:44:54,730 | INFO     | [monitor] control thread has ended
[2025-06-04 00:48:14] 2025-06-03 22:44:58,993 | INFO     | all workflow threads have been joined
[2025-06-04 00:48:14] 2025-06-03 22:44:58,993 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 00:48:14] 2025-06-03 22:44:58,993 | INFO     | traces error code: 0
[2025-06-04 00:48:14] 2025-06-03 22:44:58,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 00:48:14] 2025-06-03 22:44:59,342 [wrapper] ==== pilot stdout END ====
[2025-06-04 00:48:14] 2025-06-03 22:44:59,436 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 00:48:14] 2025-06-03 22:44:59,483 [wrapper] pilotpid: 27975
[2025-06-04 00:48:14] 2025-06-03 22:44:59,530 [wrapper] Pilot exit status: 0
[2025-06-04 00:48:14] 2025-06-03 22:44:59,810 [wrapper] pandaids: 6677473765
[2025-06-04 00:48:14] 2025-06-03 22:45:00,681 [wrapper] cleanup supervisor_pilot 14958 27976
[2025-06-04 00:48:14] 2025-06-03 22:45:00,827 [wrapper] Test setup, not cleaning
[2025-06-04 00:48:14] 2025-06-03 22:45:00,959 [wrapper] apfmon messages muted
[2025-06-04 00:48:14] 2025-06-03 22:45:01,076 [wrapper] ==== wrapper stdout END ====
[2025-06-04 00:48:14] 2025-06-03 22:45:01,158 [wrapper] ==== wrapper stderr END ====
[2025-06-04 00:48:14]  *** Error codes and diagnostics ***
[2025-06-04 00:48:14]     "exeErrorCode": 0,
[2025-06-04 00:48:14]     "exeErrorDiag": "",
[2025-06-04 00:48:14]     "pilotErrorCode": 0,
[2025-06-04 00:48:14]     "pilotErrorDiag": "",
[2025-06-04 00:48:14]  *** Listing of results directory ***
[2025-06-04 00:48:14] total 390032
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc    495897 Jun  3 08:25 pilot3.tar.gz
[2025-06-04 00:48:14] -rwx------. 1 boinc boinc     37140 Jun  3 08:32 runpilot2-wrapper.sh
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc      5111 Jun  3 08:32 queuedata.json
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc       100 Jun  3 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 00:48:14] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 20:54 run_atlas
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc       105 Jun  3 20:54 job.xml
[2025-06-04 00:48:14] -rw-r--r--. 2 boinc boinc 213525287 Jun  3 20:54 EVNT.45006593._000891.pool.root.1
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc      6392 Jun  3 20:54 init_data.xml
[2025-06-04 00:48:14] drwxrwx--x. 2 boinc boinc        68 Jun  3 20:54 shared
[2025-06-04 00:48:14] -rw-r--r--. 2 boinc boinc    508876 Jun  3 20:54 input.tar.gz
[2025-06-04 00:48:14] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:54 start_atlas.sh
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc         0 Jun  3 20:54 boinc_lockfile
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc      2524 Jun  3 20:54 pandaJob.out
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc    985078 Jun  3 20:54 agis_schedconf.cvmfs.json
[2025-06-04 00:48:14] drwx------. 4 boinc boinc      4096 Jun  3 20:54 pilot3
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc 178886977 Jun  4 00:42 HITS.45006595._022274.pool.root.1
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc       531 Jun  4 00:42 boinc_task_state.xml
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc      1018 Jun  4 00:43 memory_monitor_summary.json
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc   1603667 Jun  4 00:43 agis_ddmendpoints.agis.ALL.json
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc    392535 Jun  4 00:43 log.45006595._022274.job.log.tgz.1
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc        95 Jun  4 00:44 pilot_heartbeat.json
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc      7683 Jun  4 00:44 heartbeat.json
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc      4417 Jun  4 00:44 pilotlog.txt
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc   1190833 Jun  4 00:45 log.45006595._022274.job.log.1
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc       357 Jun  4 00:45 output.list
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc       620 Jun  4 00:45 runtime_log
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc   1597440 Jun  4 00:45 result.tar.gz
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc      8673 Jun  4 00:45 runtime_log.err
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc       656 Jun  4 00:45 CrHMDmUNag7n9Rq4apOajLDm4fhM0noT9bVof3QYDmWcXKDmh3lQJo.diag
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc      8192 Jun  4 00:48 boinc_mmap_file
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc        28 Jun  4 00:48 wrapper_checkpoint.txt
[2025-06-04 00:48:14] -rw-r--r--. 1 boinc boinc     20486 Jun  4 00:48 stderr.txt
[2025-06-04 00:48:14] HITS file was successfully produced:
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc 178886977 Jun  4 00:42 shared/HITS.pool.root.1
[2025-06-04 00:48:14]  *** Contents of shared directory: ***
[2025-06-04 00:48:14] total 385296
[2025-06-04 00:48:14] -rw-r--r--. 2 boinc boinc 213525287 Jun  3 20:54 ATLAS.root_0
[2025-06-04 00:48:14] -rw-r--r--. 2 boinc boinc    508876 Jun  3 20:54 input.tar.gz
[2025-06-04 00:48:14] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:54 start_atlas.sh
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc 178886977 Jun  4 00:42 HITS.pool.root.1
[2025-06-04 00:48:14] -rw-------. 1 boinc boinc   1597440 Jun  4 00:45 result.tar.gz
00:48:16 (24314): run_atlas exited; CPU time 50169.705067
00:48:16 (24314): called boinc_finish(0)

</stderr_txt>
]]>

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