Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:25:00 (29928): wrapper (7.7.26015): starting
06:25:00 (29928): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 06:25:00] Arguments: --nthreads 8
[2025-06-03 06:25:00] Threads: 8
[2025-06-03 06:25:00] Checking for CVMFS
[2025-06-03 06:25:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 06:25:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 06:25:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 06:25:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 06:25:01] 2.11.2.0 3101 14869 76148 146739 3 55 14275417 20275200 1 130560 0 6607947 99.982 2843952 4088 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 06:25:01] CVMFS is ok
[2025-06-03 06:25:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 06:25:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 06:25:01] Further information can be found at the LHC@home message board.
[2025-06-03 06:25:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 06:25:01] Checking for apptainer binary...
[2025-06-03 06:25:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 06:25:01] Running /usr/bin/apptainer --version
[2025-06-03 06:25:01] apptainer version 1.3.2-1.el7
[2025-06-03 06:25:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 06:25:02] c-204-15.aglt2.org
[2025-06-03 06:25:02] apptainer works
[2025-06-03 06:25:02] Set ATHENA_PROC_NUMBER=8
[2025-06-03 06:25:02] Set ATHENA_CORE_NUMBER=8
[2025-06-03 06:25:02] Starting ATLAS job with PandaID=6677518427
[2025-06-03 06:25:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 08:15:43]  *** The last 200 lines of the pilot log: ***
[2025-06-03 08:15:43] 2025-06-03 12:15:19,976 | WARNING  | process 7787 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 08:15:43] 2025-06-03 12:15:19,976 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677518427/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 08:15:43] 2025-06-03 12:15:20,066 | INFO     | number of running child processes to parent process 7787: 1
[2025-06-03 08:15:43] 2025-06-03 12:15:20,066 | INFO     | maximum number of monitored processes: 6
[2025-06-03 08:15:43] 2025-06-03 12:15:21,622 | INFO     | PID=1185 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-03 08:15:43] 2025-06-03 12:15:22,569 | INFO     | monitor loop #488: job 0:6677518427 is in state 'finished'
[2025-06-03 08:15:43] 2025-06-03 12:15:22,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 08:15:43] 2025-06-03 12:15:22,876 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-03 08:15:43] 2025-06-03 12:15:22,876 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677518427/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 08:15:43] 2025-06-03 12:15:22,877 | INFO     | extracted standard info from prmon json
[2025-06-03 08:15:43] 2025-06-03 12:15:22,877 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 08:15:43] 2025-06-03 12:15:22,877 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 08:15:43] 2025-06-03 12:15:22,878 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 08:15:43] 2025-06-03 12:15:22,878 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 08:15:43] 2025-06-03 12:15:22,882 | INFO     | fitting pss+swap vs Time
[2025-06-03 08:15:43] 2025-06-03 12:15:22,882 | INFO     | sum of square deviations: 390582207.0
[2025-06-03 08:15:43] 2025-06-03 12:15:22,883 | INFO     | sum of deviations: -2497954910.5
[2025-06-03 08:15:43] 2025-06-03 12:15:22,883 | INFO     | mean x: 1748949613.5
[2025-06-03 08:15:43] 2025-06-03 12:15:22,883 | INFO     | mean y: 2532484.6203703703
[2025-06-03 08:15:43] 2025-06-03 12:15:22,883 | INFO     | -- intersect: 11187878864.875225
[2025-06-03 08:15:43] 2025-06-03 12:15:22,883 | INFO     | intersect: 11187878864.875225
[2025-06-03 08:15:43] 2025-06-03 12:15:22,884 | INFO     | chi2: 1.635643440196607
[2025-06-03 08:15:43] 2025-06-03 12:15:22,884 | INFO     | sum of square deviations: 338804492.0
[2025-06-03 08:15:43] 2025-06-03 12:15:22,884 | INFO     | sum of deviations: -1892458570.999998
[2025-06-03 08:15:43] 2025-06-03 12:15:22,884 | INFO     | mean x: 1748949461.0
[2025-06-03 08:15:43] 2025-06-03 12:15:22,885 | INFO     | mean y: 2534269.86407767
[2025-06-03 08:15:43] 2025-06-03 12:15:22,885 | INFO     | -- intersect: 9771632601.993856
[2025-06-03 08:15:43] 2025-06-03 12:15:22,885 | INFO     | intersect: 9771632601.993856
[2025-06-03 08:15:43] 2025-06-03 12:15:22,885 | INFO     | chi2: 1.637313483116664
[2025-06-03 08:15:43] 2025-06-03 12:15:22,885 | INFO     | current chi2=1.637313483116664 (change=-0.10210311605910775 %)
[2025-06-03 08:15:43] 2025-06-03 12:15:22,885 | INFO     | right removable region: 102
[2025-06-03 08:15:43] 2025-06-03 12:15:22,886 | INFO     | sum of square deviations: 338804492.0
[2025-06-03 08:15:43] 2025-06-03 12:15:22,886 | INFO     | sum of deviations: -18969783049.999996
[2025-06-03 08:15:43] 2025-06-03 12:15:22,886 | INFO     | mean x: 1748949766.0
[2025-06-03 08:15:43] 2025-06-03 12:15:22,886 | INFO     | mean y: 2579978.514563107
[2025-06-03 08:15:43] 2025-06-03 12:15:22,886 | INFO     | -- intersect: 97926894471.86626
[2025-06-03 08:15:43] 2025-06-03 12:15:22,887 | INFO     | intersect: 97926894471.86626
[2025-06-03 08:15:43] 2025-06-03 12:15:22,887 | INFO     | chi2: 0.10105604006832852
[2025-06-03 08:15:43] 2025-06-03 12:15:22,887 | INFO     | current chi2=0.10105604006832852 (change=93.82163388518336 %)
[2025-06-03 08:15:43] 2025-06-03 12:15:22,887 | INFO     | sum of square deviations: 291817564.5
[2025-06-03 08:15:43] 2025-06-03 12:15:22,888 | INFO     | sum of deviations: -16811798158.499998
[2025-06-03 08:15:43] 2025-06-03 12:15:22,888 | INFO     | mean x: 1748949918.5
[2025-06-03 08:15:43] 2025-06-03 12:15:22,888 | INFO     | mean y: 2572941.9285714286
[2025-06-03 08:15:43] 2025-06-03 12:15:22,888 | INFO     | -- intersect: 100760706091.06265
[2025-06-03 08:15:43] 2025-06-03 12:15:22,888 | INFO     | intersect: 100760706091.06265
[2025-06-03 08:15:43] 2025-06-03 12:15:22,888 | INFO     | chi2: 0.10008055111461342
[2025-06-03 08:15:43] 2025-06-03 12:15:22,888 | INFO     | current chi2=0.10008055111461342 (change=0.9652950511968721 %)
[2025-06-03 08:15:43] 2025-06-03 12:15:22,889 | INFO     | left removable region: 20
[2025-06-03 08:15:43] 2025-06-03 12:15:22,889 | INFO     | sum of square deviations: 170944600.5
[2025-06-03 08:15:43] 2025-06-03 12:15:22,889 | INFO     | sum of deviations: -10167057666.500002
[2025-06-03 08:15:43] 2025-06-03 12:15:22,889 | INFO     | mean x: 1748950040.5
[2025-06-03 08:15:43] 2025-06-03 12:15:22,889 | INFO     | mean y: 2555066.2804878047
[2025-06-03 08:15:43] 2025-06-03 12:15:22,890 | INFO     | -- intersect: 104022663718.91391
[2025-06-03 08:15:43] 2025-06-03 12:15:22,890 | INFO     | intersect: 104022663718.91391
[2025-06-03 08:15:43] 2025-06-03 12:15:22,890 | INFO     | chi2: 0.08953549835288846
[2025-06-03 08:15:43] 2025-06-03 12:15:22,890 | INFO     | -- intersect: 104022663718.91391
[2025-06-03 08:15:43] 2025-06-03 12:15:22,890 | INFO     | current memory leak: -59.48 B/s (using 82 data points, chi2=0.09)
[2025-06-03 08:15:43] 2025-06-03 12:15:22,891 | INFO     | ..............................
[2025-06-03 08:15:43] 2025-06-03 12:15:22,891 | INFO     | . Timing measurements:
[2025-06-03 08:15:43] 2025-06-03 12:15:22,891 | INFO     | . get job = 0 s
[2025-06-03 08:15:43] 2025-06-03 12:15:22,891 | INFO     | . initial setup = 2 s
[2025-06-03 08:15:43] 2025-06-03 12:15:22,891 | INFO     | . payload setup = 11 s
[2025-06-03 08:15:43] 2025-06-03 12:15:22,891 | INFO     | . stage-in = 0 s
[2025-06-03 08:15:43] 2025-06-03 12:15:22,891 | INFO     | . payload execution = 6566 s
[2025-06-03 08:15:43] 2025-06-03 12:15:22,891 | INFO     | . stage-out = 0 s
[2025-06-03 08:15:43] 2025-06-03 12:15:22,892 | INFO     | . log creation = 0 s
[2025-06-03 08:15:43] 2025-06-03 12:15:22,892 | INFO     | ..............................
[2025-06-03 08:15:43] 2025-06-03 12:15:23,353 | INFO     | 
[2025-06-03 08:15:43] 2025-06-03 12:15:23,353 | INFO     | job summary report
[2025-06-03 08:15:43] 2025-06-03 12:15:23,354 | INFO     | --------------------------------------------------
[2025-06-03 08:15:43] 2025-06-03 12:15:23,354 | INFO     | PanDA job id: 6677518427
[2025-06-03 08:15:43] 2025-06-03 12:15:23,354 | INFO     | task id: 45006595
[2025-06-03 08:15:43] 2025-06-03 12:15:23,354 | INFO     | errors: (none)
[2025-06-03 08:15:43] 2025-06-03 12:15:23,354 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 08:15:43] 2025-06-03 12:15:23,355 | INFO     | pilot state: finished 
[2025-06-03 08:15:43] 2025-06-03 12:15:23,355 | INFO     | transexitcode: 0
[2025-06-03 08:15:43] 2025-06-03 12:15:23,355 | INFO     | exeerrorcode: 0
[2025-06-03 08:15:43] 2025-06-03 12:15:23,355 | INFO     | exeerrordiag: 
[2025-06-03 08:15:43] 2025-06-03 12:15:23,355 | INFO     | exitcode: 0
[2025-06-03 08:15:43] 2025-06-03 12:15:23,355 | INFO     | exitmsg: OK
[2025-06-03 08:15:43] 2025-06-03 12:15:23,356 | INFO     | cpuconsumptiontime: 48940 s
[2025-06-03 08:15:43] 2025-06-03 12:15:23,356 | INFO     | nevents: 400
[2025-06-03 08:15:43] 2025-06-03 12:15:23,356 | INFO     | neventsw: 0
[2025-06-03 08:15:43] 2025-06-03 12:15:23,356 | INFO     | pid: 7787
[2025-06-03 08:15:43] 2025-06-03 12:15:23,356 | INFO     | pgrp: 7787
[2025-06-03 08:15:43] 2025-06-03 12:15:23,356 | INFO     | corecount: 8
[2025-06-03 08:15:43] 2025-06-03 12:15:23,357 | INFO     | event service: False
[2025-06-03 08:15:43] 2025-06-03 12:15:23,357 | INFO     | sizes: {0: 2405182, 6: 2405388, 11: 2405416, 6582: 2432311, 6584: 2441308, 6590: 2441422}
[2025-06-03 08:15:43] 2025-06-03 12:15:23,357 | INFO     | --------------------------------------------------
[2025-06-03 08:15:43] 2025-06-03 12:15:23,357 | INFO     | 
[2025-06-03 08:15:43] 2025-06-03 12:15:23,357 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 08:15:43] 2025-06-03 12:15:23,384 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,384 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,385 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,385 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,385 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,385 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,385 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,385 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,386 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,386 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,386 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,386 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,386 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,387 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,387 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,387 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,387 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,387 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 08:15:43] 2025-06-03 12:15:23,388 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,388 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 08:15:43] 2025-06-03 12:15:23,388 | INFO     | job 6677518427 has completed (purged errors)
[2025-06-03 08:15:43] 2025-06-03 12:15:23,388 | INFO     | overall cleanup function is called
[2025-06-03 08:15:43] 2025-06-03 12:15:24,392 | INFO     | --- collectZombieJob: --- 10, [7787]
[2025-06-03 08:15:43] 2025-06-03 12:15:24,392 | INFO     | zombie collector waiting for pid 7787
[2025-06-03 08:15:43] 2025-06-03 12:15:24,393 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 08:15:43] 2025-06-03 12:15:24,393 | INFO     | collected zombie processes
[2025-06-03 08:15:43] 2025-06-03 12:15:24,393 | INFO     | will attempt to kill all subprocesses of pid=7787
[2025-06-03 08:15:43] 2025-06-03 12:15:24,485 | INFO     | process IDs to be killed: [7787] (in reverse order)
[2025-06-03 08:15:43] 2025-06-03 12:15:24,540 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 08:15:43] 2025-06-03 12:15:24,540 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 08:15:43] 2025-06-03 12:15:24,544 | INFO     | did not find any defunct processes belonging to 7787
[2025-06-03 08:15:43] 2025-06-03 12:15:24,546 | INFO     | did not find any defunct processes belonging to 7787
[2025-06-03 08:15:43] 2025-06-03 12:15:24,547 | INFO     | ready for new job
[2025-06-03 08:15:43] 2025-06-03 12:15:24,547 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 08:15:43] 2025-06-03 12:15:24,548 | INFO     | **************************************
[2025-06-03 08:15:43] 2025-06-03 12:15:24,549 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 08:15:43] 2025-06-03 12:15:24,549 | INFO     | **************************************
[2025-06-03 08:15:43] 2025-06-03 12:15:24,549 | INFO     | 
[2025-06-03 08:15:43] 2025-06-03 12:15:24,549 | INFO     | architecture information:
[2025-06-03 08:15:43] 2025-06-03 12:15:24,550 | INFO     | executing command: cat /etc/os-release
[2025-06-03 08:15:43] 2025-06-03 12:15:24,565 | INFO     | cat /etc/os-release:
[2025-06-03 08:15:43] NAME="CentOS Linux"
[2025-06-03 08:15:43] VERSION="7 (Core)"
[2025-06-03 08:15:43] ID="centos"
[2025-06-03 08:15:43] ID_LIKE="rhel fedora"
[2025-06-03 08:15:43] VERSION_ID="7"
[2025-06-03 08:15:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 08:15:43] ANSI_COLOR="0;31"
[2025-06-03 08:15:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 08:15:43] HOME_URL="https://www.centos.org/"
[2025-06-03 08:15:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 08:15:43] 
[2025-06-03 08:15:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 08:15:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 08:15:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 08:15:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 08:15:43] 
[2025-06-03 08:15:43] 2025-06-03 12:15:24,566 | INFO     | **************************************
[2025-06-03 08:15:43] 2025-06-03 12:15:25,069 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 08:15:43] 2025-06-03 12:15:25,091 | INFO     | sufficient remaining disk space (18651021312 B)
[2025-06-03 08:15:43] 2025-06-03 12:15:25,091 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 08:15:43] 2025-06-03 12:15:25,091 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 08:15:43] 2025-06-03 12:15:25,091 | INFO     | update_server=False
[2025-06-03 08:15:43] 2025-06-03 12:15:25,092 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 08:15:43] 2025-06-03 12:15:25,092 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 08:15:43] 2025-06-03 12:15:25,277 | INFO     | all data control threads have been joined
[2025-06-03 08:15:43] 2025-06-03 12:15:25,461 | INFO     | all job control threads have been joined
[2025-06-03 08:15:43] 2025-06-03 12:15:25,628 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 08:15:43] 2025-06-03 12:15:25,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 08:15:43] 2025-06-03 12:15:25,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 08:15:43] 2025-06-03 12:15:26,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 08:15:43] 2025-06-03 12:15:26,077 | INFO     | aborting loop
[2025-06-03 08:15:43] 2025-06-03 12:15:26,097 | INFO     | [job] retrieve thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:26,278 | INFO     | [data] control thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:26,355 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:26,376 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:26,466 | INFO     | [job] control thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:26,468 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:26,593 | INFO     | all payload control threads have been joined
[2025-06-03 08:15:43] 2025-06-03 12:15:26,711 | INFO     | [payload] failed_post thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:27,078 | INFO     | [job] job monitor thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:27,097 | INFO     | [data] copytool_out thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:27,289 | INFO     | [data] copytool_in thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:27,317 | INFO     | [payload] validate_post thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:27,503 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 08:15:43] 2025-06-03 12:15:27,507 | INFO     | [job] validate thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:27,597 | INFO     | [payload] control thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:27,995 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 08:15:43] 2025-06-03 12:15:29,001 | INFO     | [job] queue monitor thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:31,509 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:35,390 | INFO     | job.realtimelogging is not enabled
[2025-06-03 08:15:43] 2025-06-03 12:15:36,390 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 08:15:43] 2025-06-03 12:15:37,819 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140646577928000)>', '<ExcThread(monitor, started 140645968615168)>']
[2025-06-03 08:15:43] 2025-06-03 12:15:38,696 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 08:15:43] 2025-06-03 12:15:38,696 | INFO     | [monitor] control thread has ended
[2025-06-03 08:15:43] 2025-06-03 12:15:42,845 | INFO     | all workflow threads have been joined
[2025-06-03 08:15:43] 2025-06-03 12:15:42,845 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 08:15:43] 2025-06-03 12:15:42,846 | INFO     | traces error code: 0
[2025-06-03 08:15:43] 2025-06-03 12:15:42,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 08:15:43] 2025-06-03 12:15:42,953 [wrapper] ==== pilot stdout END ====
[2025-06-03 08:15:43] 2025-06-03 12:15:42,957 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 08:15:43] 2025-06-03 12:15:42,962 [wrapper] pilotpid: 1185
[2025-06-03 08:15:43] 2025-06-03 12:15:42,967 [wrapper] Pilot exit status: 0
[2025-06-03 08:15:43] 2025-06-03 12:15:42,986 [wrapper] pandaids: 6677518427
[2025-06-03 08:15:43] 2025-06-03 12:15:43,027 [wrapper] cleanup supervisor_pilot  4845 1186
[2025-06-03 08:15:43] 2025-06-03 12:15:43,031 [wrapper] Test setup, not cleaning
[2025-06-03 08:15:43] 2025-06-03 12:15:43,036 [wrapper] apfmon messages muted
[2025-06-03 08:15:43] 2025-06-03 12:15:43,041 [wrapper] ==== wrapper stdout END ====
[2025-06-03 08:15:43] 2025-06-03 12:15:43,046 [wrapper] ==== wrapper stderr END ====
[2025-06-03 08:15:43]  *** Error codes and diagnostics ***
[2025-06-03 08:15:43]     "exeErrorCode": 0,
[2025-06-03 08:15:43]     "exeErrorDiag": "",
[2025-06-03 08:15:43]     "pilotErrorCode": 0,
[2025-06-03 08:15:43]     "pilotErrorDiag": "",
[2025-06-03 08:15:43]  *** Listing of results directory ***
[2025-06-03 08:15:43] total 385708
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 03:38 pilot3.tar.gz
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 03:52 queuedata.json
[2025-06-03 08:15:43] -rwx------ 1 boincer umatlas     37140 Jun  3 03:52 runpilot2-wrapper.sh
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas       100 Jun  3 06:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 08:15:43] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 06:24 run_atlas
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas       105 Jun  3 06:24 job.xml
[2025-06-03 08:15:43] -rw-r--r-- 2 boincer umatlas 213840222 Jun  3 06:25 EVNT.45006593._000991.pool.root.1
[2025-06-03 08:15:43] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 06:25 start_atlas.sh
[2025-06-03 08:15:43] drwxrwx--x 2 boincer umatlas      4096 Jun  3 06:25 shared
[2025-06-03 08:15:43] -rw-r--r-- 2 boincer umatlas    508878 Jun  3 06:25 input.tar.gz
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas         0 Jun  3 06:25 boinc_lockfile
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas      2524 Jun  3 06:25 pandaJob.out
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas    984355 Jun  3 06:25 agis_schedconf.cvmfs.json
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas   1603667 Jun  3 06:25 agis_ddmendpoints.agis.ALL.json
[2025-06-03 08:15:43] drwx------ 4 boincer umatlas      4096 Jun  3 06:25 pilot3
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas      5825 Jun  3 08:11 init_data.xml
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas 175419329 Jun  3 08:14 HITS.45006595._024777.pool.root.1
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas        95 Jun  3 08:14 pilot_heartbeat.json
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas       529 Jun  3 08:14 boinc_task_state.xml
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas      1061 Jun  3 08:15 memory_monitor_summary.json
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas    324562 Jun  3 08:15 log.45006595._024777.job.log.tgz.1
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas      7750 Jun  3 08:15 heartbeat.json
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas        27 Jun  3 08:15 wrapper_checkpoint.txt
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 08:15 boinc_mmap_file
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas      4425 Jun  3 08:15 pilotlog.txt
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas    606955 Jun  3 08:15 log.45006595._024777.job.log.1
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas       357 Jun  3 08:15 output.list
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas       620 Jun  3 08:15 runtime_log
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas    952320 Jun  3 08:15 result.tar.gz
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas      8659 Jun  3 08:15 runtime_log.err
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas       659 Jun  3 08:15 3EXNDmlcbg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUoiKDmL3l05m.diag
[2025-06-03 08:15:43] -rw-r--r-- 1 boincer umatlas     21092 Jun  3 08:15 stderr.txt
[2025-06-03 08:15:43] HITS file was successfully produced:
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas 175419329 Jun  3 08:14 shared/HITS.pool.root.1
[2025-06-03 08:15:43]  *** Contents of shared directory: ***
[2025-06-03 08:15:43] total 381596
[2025-06-03 08:15:43] -rw-r--r-- 2 boincer umatlas 213840222 Jun  3 06:25 ATLAS.root_0
[2025-06-03 08:15:43] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 06:25 start_atlas.sh
[2025-06-03 08:15:43] -rw-r--r-- 2 boincer umatlas    508878 Jun  3 06:25 input.tar.gz
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas 175419329 Jun  3 08:14 HITS.pool.root.1
[2025-06-03 08:15:43] -rw------- 1 boincer umatlas    952320 Jun  3 08:15 result.tar.gz
08:15:45 (29928): run_atlas exited; CPU time 48888.330103
08:15:45 (29928): called boinc_finish(0)

</stderr_txt>
]]>

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