Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:37:41 (10704): wrapper (7.7.26015): starting
22:37:41 (10704): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 22:37:41] Arguments: --nthreads 8
[2025-06-03 22:37:41] Threads: 8
[2025-06-03 22:37:41] Checking for CVMFS
[2025-06-03 22:37:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 22:37:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 22:37:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 22:37:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 22:37:44] 2.11.2.0 11201 32270 89488 146755 2 52 17282882 25165825 3740 130560 0 16704605 99.778 19957511 2039 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 22:37:44] CVMFS is ok
[2025-06-03 22:37:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:37:44] Checking for apptainer binary...
[2025-06-03 22:37:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 22:37:44] Running /usr/bin/apptainer --version
[2025-06-03 22:37:44] apptainer version 1.3.2-1.el7
[2025-06-03 22:37:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 23:08:19] cg-vwn265.simple-grid.lan
[2025-06-03 23:08:19] apptainer works
[2025-06-03 23:08:19] Set ATHENA_PROC_NUMBER=8
[2025-06-03 23:08:19] Set ATHENA_CORE_NUMBER=8
[2025-06-03 23:08:20] Starting ATLAS job with PandaID=6677517793
[2025-06-03 23:08:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:16:49]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:16:49] 2025-06-04 01:15:52,546 | INFO     | extracted standard info from prmon json
[2025-06-04 03:16:49] 2025-06-04 01:15:52,547 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 03:16:49] 2025-06-04 01:15:52,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:16:49] 2025-06-04 01:15:52,547 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:16:49] 2025-06-04 01:15:52,547 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:16:49] 2025-06-04 01:15:52,552 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:16:49] 2025-06-04 01:15:52,553 | INFO     | sum of square deviations: 3822136780.0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,555 | INFO     | sum of deviations: 40610215395.999985
[2025-06-04 03:16:49] 2025-06-04 01:15:52,555 | INFO     | mean x: 1748992593.0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,555 | INFO     | mean y: 2463751.4545454546
[2025-06-04 03:16:49] 2025-06-04 01:15:52,555 | INFO     | -- intersect: -18580588089.96557
[2025-06-04 03:16:49] 2025-06-04 01:15:52,555 | INFO     | intersect: -18580588089.96557
[2025-06-04 03:16:49] 2025-06-04 01:15:52,556 | INFO     | chi2: 5.793624105315867
[2025-06-04 03:16:49] 2025-06-04 01:15:52,556 | INFO     | sum of square deviations: 3579276412.5
[2025-06-04 03:16:49] 2025-06-04 01:15:52,558 | INFO     | sum of deviations: 55072727996.49998
[2025-06-04 03:16:49] 2025-06-04 01:15:52,558 | INFO     | mean x: 1748992440.5
[2025-06-04 03:16:49] 2025-06-04 01:15:52,561 | INFO     | mean y: 2472663.163716814
[2025-06-04 03:16:49] 2025-06-04 01:15:52,562 | INFO     | -- intersect: -26908493086.003937
[2025-06-04 03:16:49] 2025-06-04 01:15:52,562 | INFO     | intersect: -26908493086.003937
[2025-06-04 03:16:49] 2025-06-04 01:15:52,562 | INFO     | chi2: 5.0617806592967876
[2025-06-04 03:16:49] 2025-06-04 01:15:52,563 | INFO     | current chi2=5.0617806592967876 (change=12.63187657182635 %)
[2025-06-04 03:16:49] 2025-06-04 01:15:52,563 | INFO     | right removable region: 225
[2025-06-04 03:16:49] 2025-06-04 01:15:52,563 | INFO     | sum of square deviations: 3579276412.5
[2025-06-04 03:16:49] 2025-06-04 01:15:52,565 | INFO     | sum of deviations: -36232701737.0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,565 | INFO     | mean x: 1748992745.5
[2025-06-04 03:16:49] 2025-06-04 01:15:52,565 | INFO     | mean y: 2511924.0707964604
[2025-06-04 03:16:49] 2025-06-04 01:15:52,565 | INFO     | -- intersect: 17707412352.1481
[2025-06-04 03:16:49] 2025-06-04 01:15:52,565 | INFO     | intersect: 17707412352.1481
[2025-06-04 03:16:49] 2025-06-04 01:15:52,566 | INFO     | chi2: 1.4296954797792236
[2025-06-04 03:16:49] 2025-06-04 01:15:52,566 | INFO     | current chi2=1.4296954797792236 (change=75.3229506472913 %)
[2025-06-04 03:16:49] 2025-06-04 01:15:52,570 | INFO     | sum of square deviations: 3346927870.0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,572 | INFO     | sum of deviations: -54398261824.0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,572 | INFO     | mean x: 1748992898.0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,572 | INFO     | mean y: 2523730.6018099547
[2025-06-04 03:16:49] 2025-06-04 01:15:52,572 | INFO     | -- intersect: 28429241392.049507
[2025-06-04 03:16:49] 2025-06-04 01:15:52,572 | INFO     | intersect: 28429241392.049507
[2025-06-04 03:16:49] 2025-06-04 01:15:52,572 | INFO     | chi2: 0.9947868647005307
[2025-06-04 03:16:49] 2025-06-04 01:15:52,573 | INFO     | current chi2=0.9947868647005307 (change=30.419667770499796 %)
[2025-06-04 03:16:49] 2025-06-04 01:15:52,573 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,575 | INFO     | sum of deviations: -47835728805.50001
[2025-06-04 03:16:49] 2025-06-04 01:15:52,575 | INFO     | mean x: 1748993050.5
[2025-06-04 03:16:49] 2025-06-04 01:15:52,575 | INFO     | mean y: 2519218.6435185187
[2025-06-04 03:16:49] 2025-06-04 01:15:52,575 | INFO     | -- intersect: 26776325084.34261
[2025-06-04 03:16:49] 2025-06-04 01:15:52,575 | INFO     | intersect: 26776325084.34261
[2025-06-04 03:16:49] 2025-06-04 01:15:52,576 | INFO     | chi2: 0.9861920136532709
[2025-06-04 03:16:49] 2025-06-04 01:15:52,576 | INFO     | current chi2=0.9861920136532709 (change=0.8639891973088274 %)
[2025-06-04 03:16:49] 2025-06-04 01:15:52,576 | INFO     | left removable region: 30
[2025-06-04 03:16:49] 2025-06-04 01:15:52,576 | INFO     | sum of square deviations: 2299168690.0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,580 | INFO     | sum of deviations: -10281839750.0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,580 | INFO     | mean x: 1748993325.0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,580 | INFO     | mean y: 2512512.9435897437
[2025-06-04 03:16:49] 2025-06-04 01:15:52,580 | INFO     | -- intersect: 7823978232.133454
[2025-06-04 03:16:49] 2025-06-04 01:15:52,580 | INFO     | intersect: 7823978232.133454
[2025-06-04 03:16:49] 2025-06-04 01:15:52,581 | INFO     | chi2: 0.10535742314181165
[2025-06-04 03:16:49] 2025-06-04 01:15:52,581 | INFO     | -- intersect: 7823978232.133454
[2025-06-04 03:16:49] 2025-06-04 01:15:52,581 | INFO     | current memory leak: -4.47 B/s (using 195 data points, chi2=0.11)
[2025-06-04 03:16:49] 2025-06-04 01:15:52,583 | INFO     | ..............................
[2025-06-04 03:16:49] 2025-06-04 01:15:52,583 | INFO     | . Timing measurements:
[2025-06-04 03:16:49] 2025-06-04 01:15:52,583 | INFO     | . get job = 0 s
[2025-06-04 03:16:49] 2025-06-04 01:15:52,583 | INFO     | . initial setup = 3 s
[2025-06-04 03:16:49] 2025-06-04 01:15:52,583 | INFO     | . payload setup = 160 s
[2025-06-04 03:16:49] 2025-06-04 01:15:52,583 | INFO     | . stage-in = 0 s
[2025-06-04 03:16:49] 2025-06-04 01:15:52,583 | INFO     | . payload execution = 14235 s
[2025-06-04 03:16:49] 2025-06-04 01:15:52,584 | INFO     | . stage-out = 3 s
[2025-06-04 03:16:49] 2025-06-04 01:15:52,584 | INFO     | . log creation = 1 s
[2025-06-04 03:16:49] 2025-06-04 01:15:52,584 | INFO     | ..............................
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | 
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | job summary report
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | --------------------------------------------------
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | PanDA job id: 6677517793
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | task id: 45006595
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | errors: (none)
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | pilot state: finished 
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | transexitcode: 0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | exeerrorcode: 0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | exeerrordiag: 
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | exitcode: 0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,750 | INFO     | exitmsg: OK
[2025-06-04 03:16:49] 2025-06-04 01:15:52,751 | INFO     | cpuconsumptiontime: 51449 s
[2025-06-04 03:16:49] 2025-06-04 01:15:52,751 | INFO     | nevents: 400
[2025-06-04 03:16:49] 2025-06-04 01:15:52,751 | INFO     | neventsw: 0
[2025-06-04 03:16:49] 2025-06-04 01:15:52,751 | INFO     | pid: 2478
[2025-06-04 03:16:49] 2025-06-04 01:15:52,751 | INFO     | pgrp: 2478
[2025-06-04 03:16:49] 2025-06-04 01:15:52,751 | INFO     | corecount: 8
[2025-06-04 03:16:49] 2025-06-04 01:15:52,751 | INFO     | event service: False
[2025-06-04 03:16:49] 2025-06-04 01:15:52,751 | INFO     | sizes: {0: 2404955, 1: 2405210, 2: 2405210, 12: 2405238, 23: 2405266, 34: 2405294, 45: 2405450, 55: 2405478, 66: 2405506, 77: 2405534, 88: 2405590, 91: 2406104, 98
[2025-06-04 03:16:49] 2025-06-04 01:15:52,751 | INFO     | --------------------------------------------------
[2025-06-04 03:16:49] 2025-06-04 01:15:52,751 | INFO     | 
[2025-06-04 03:16:49] 2025-06-04 01:15:52,752 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-04 03:16:49] 2025-06-04 01:15:52,948 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,949 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,949 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,949 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,949 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,949 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,949 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,949 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,949 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,949 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,949 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,950 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,950 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,950 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,950 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,950 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,950 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,950 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:16:49] 2025-06-04 01:15:52,950 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,950 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:16:49] 2025-06-04 01:15:52,951 | INFO     | job 6677517793 has completed (purged errors)
[2025-06-04 03:16:49] 2025-06-04 01:15:52,951 | INFO     | overall cleanup function is called
[2025-06-04 03:16:49] 2025-06-04 01:15:53,960 | INFO     | --- collectZombieJob: --- 10, [2478]
[2025-06-04 03:16:49] 2025-06-04 01:15:53,960 | INFO     | zombie collector waiting for pid 2478
[2025-06-04 03:16:49] 2025-06-04 01:15:53,960 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:16:49] 2025-06-04 01:15:53,960 | INFO     | collected zombie processes
[2025-06-04 03:16:49] 2025-06-04 01:15:53,960 | INFO     | will attempt to kill all subprocesses of pid=2478
[2025-06-04 03:16:49] 2025-06-04 01:15:54,069 | INFO     | process IDs to be killed: [2478] (in reverse order)
[2025-06-04 03:16:49] 2025-06-04 01:15:54,130 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:16:49] 2025-06-04 01:15:54,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:16:49] 2025-06-04 01:15:54,134 | INFO     | did not find any defunct processes belonging to 2478
[2025-06-04 03:16:49] 2025-06-04 01:15:54,138 | INFO     | did not find any defunct processes belonging to 2478
[2025-06-04 03:16:49] 2025-06-04 01:15:54,139 | INFO     | ready for new job
[2025-06-04 03:16:49] 2025-06-04 01:15:54,139 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:16:49] 2025-06-04 01:15:54,141 | INFO     | **************************************
[2025-06-04 03:16:49] 2025-06-04 01:15:54,141 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:16:49] 2025-06-04 01:15:54,141 | INFO     | **************************************
[2025-06-04 03:16:49] 2025-06-04 01:15:54,141 | INFO     | 
[2025-06-04 03:16:49] 2025-06-04 01:15:54,142 | INFO     | pilot is running in a VM
[2025-06-04 03:16:49] 2025-06-04 01:15:54,142 | INFO     | architecture information:
[2025-06-04 03:16:49] 2025-06-04 01:15:54,142 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:16:49] 2025-06-04 01:15:54,169 | INFO     | cat /etc/os-release:
[2025-06-04 03:16:49] NAME="CentOS Linux"
[2025-06-04 03:16:49] VERSION="7 (Core)"
[2025-06-04 03:16:49] ID="centos"
[2025-06-04 03:16:49] ID_LIKE="rhel fedora"
[2025-06-04 03:16:49] VERSION_ID="7"
[2025-06-04 03:16:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:16:49] ANSI_COLOR="0;31"
[2025-06-04 03:16:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:16:49] HOME_URL="https://www.centos.org/"
[2025-06-04 03:16:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:16:49] 
[2025-06-04 03:16:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:16:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:16:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:16:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:16:49] 
[2025-06-04 03:16:49] 2025-06-04 01:15:54,169 | INFO     | **************************************
[2025-06-04 03:16:49] 2025-06-04 01:15:54,673 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-04 03:16:49] 2025-06-04 01:15:54,827 | INFO     | sufficient remaining disk space (496759734272 B)
[2025-06-04 03:16:49] 2025-06-04 01:15:54,828 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:16:49] 2025-06-04 01:15:54,828 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:16:49] 2025-06-04 01:15:54,828 | INFO     | update_server=False
[2025-06-04 03:16:49] 2025-06-04 01:15:54,828 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:16:49] 2025-06-04 01:15:54,829 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 03:16:49] 2025-06-04 01:15:54,829 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:16:49] 2025-06-04 01:15:54,829 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:16:49] 2025-06-04 01:15:54,830 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:16:49] 2025-06-04 01:15:55,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:16:49] 2025-06-04 01:15:55,017 | INFO     | aborting loop
[2025-06-04 03:16:49] 2025-06-04 01:15:55,266 | INFO     | all payload control threads have been joined
[2025-06-04 03:16:49] 2025-06-04 01:15:55,704 | INFO     | all job control threads have been joined
[2025-06-04 03:16:49] 2025-06-04 01:15:55,753 | INFO     | all data control threads have been joined
[2025-06-04 03:16:49] 2025-06-04 01:15:55,834 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:55,882 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:55,932 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:56,023 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:56,024 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:16:49] 2025-06-04 01:15:56,272 | INFO     | [payload] control thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:56,409 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:56,626 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:56,701 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:16:49] 2025-06-04 01:15:56,710 | INFO     | [job] control thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:56,759 | INFO     | [data] control thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:56,787 | INFO     | [job] validate thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:56,798 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:56,923 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:56,988 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:57,765 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:16:49] 2025-06-04 01:15:58,031 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:15:58,770 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:16:00,710 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:16:49] 2025-06-04 01:16:02,560 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139752642783040)>', '<ExcThread(monitor, started 139751977899776)>']
[2025-06-04 03:16:49] 2025-06-04 01:16:02,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:16:49] 2025-06-04 01:16:02,876 | INFO     | [monitor] control thread has ended
[2025-06-04 03:16:49] 2025-06-04 01:16:07,586 | INFO     | all workflow threads have been joined
[2025-06-04 03:16:49] 2025-06-04 01:16:07,586 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:16:49] 2025-06-04 01:16:07,586 | INFO     | traces error code: 0
[2025-06-04 03:16:49] 2025-06-04 01:16:07,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:16:49] 2025-06-04 01:16:07,856 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:16:49] 2025-06-04 01:16:07,939 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:16:49] 2025-06-04 01:16:08,001 [wrapper] pilotpid: 28253
[2025-06-04 03:16:49] 2025-06-04 01:16:08,075 [wrapper] Pilot exit status: 0
[2025-06-04 03:16:49] 2025-06-04 01:16:08,441 [wrapper] pandaids: 6677517793
[2025-06-04 03:16:49] 2025-06-04 01:16:09,256 [wrapper] cleanup supervisor_pilot 26933 28254
[2025-06-04 03:16:49] 2025-06-04 01:16:09,331 [wrapper] Test setup, not cleaning
[2025-06-04 03:16:49] 2025-06-04 01:16:09,420 [wrapper] apfmon messages muted
[2025-06-04 03:16:49] 2025-06-04 01:16:09,463 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:16:49] 2025-06-04 01:16:09,533 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:16:49]  *** Error codes and diagnostics ***
[2025-06-04 03:16:49]     "exeErrorCode": 0,
[2025-06-04 03:16:49]     "exeErrorDiag": "",
[2025-06-04 03:16:49]     "pilotErrorCode": 0,
[2025-06-04 03:16:49]     "pilotErrorDiag": "",
[2025-06-04 03:16:49]  *** Listing of results directory ***
[2025-06-04 03:16:49] total 395028
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc    495897 Jun  3 09:38 pilot3.tar.gz
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc      5111 Jun  3 09:52 queuedata.json
[2025-06-04 03:16:49] -rwx------. 1 boinc boinc     37140 Jun  3 09:52 runpilot2-wrapper.sh
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc       100 Jun  3 22:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:16:49] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 22:37 run_atlas
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc       105 Jun  3 22:37 job.xml
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc      6391 Jun  3 22:37 init_data.xml
[2025-06-04 03:16:49] -rw-r--r--. 2 boinc boinc 216286866 Jun  3 22:37 EVNT.45006593._000985.pool.root.1
[2025-06-04 03:16:49] -rw-r--r--. 2 boinc boinc     15093 Jun  3 22:37 start_atlas.sh
[2025-06-04 03:16:49] drwxrwx--x. 2 boinc boinc        68 Jun  3 22:37 shared
[2025-06-04 03:16:49] -rw-r--r--. 2 boinc boinc    508884 Jun  3 22:37 input.tar.gz
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc         0 Jun  3 22:37 boinc_lockfile
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc      2524 Jun  3 23:08 pandaJob.out
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc    986853 Jun  3 23:11 agis_schedconf.cvmfs.json
[2025-06-04 03:16:49] drwx------. 4 boinc boinc      4096 Jun  3 23:11 pilot3
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc 181134382 Jun  4 03:13 HITS.45006595._024627.pool.root.1
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc       531 Jun  4 03:13 boinc_task_state.xml
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc      1027 Jun  4 03:14 memory_monitor_summary.json
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc   1603667 Jun  4 03:14 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc    389878 Jun  4 03:14 log.45006595._024627.job.log.tgz.1
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc        95 Jun  4 03:15 pilot_heartbeat.json
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc      7682 Jun  4 03:15 heartbeat.json
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc      4539 Jun  4 03:16 pilotlog.txt
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc   1242634 Jun  4 03:16 log.45006595._024627.job.log.1
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc       357 Jun  4 03:16 output.list
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc       620 Jun  4 03:16 runtime_log
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc   1648640 Jun  4 03:16 result.tar.gz
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc      8659 Jun  4 03:16 runtime_log.err
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc       657 Jun  4 03:16 fWwMDmlcbg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6niKDmuPqyxn.diag
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc      8192 Jun  4 03:16 boinc_mmap_file
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc        28 Jun  4 03:16 wrapper_checkpoint.txt
[2025-06-04 03:16:49] -rw-r--r--. 1 boinc boinc     20500 Jun  4 03:16 stderr.txt
[2025-06-04 03:16:49] HITS file was successfully produced:
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc 181134382 Jun  4 03:13 shared/HITS.pool.root.1
[2025-06-04 03:16:49]  *** Contents of shared directory: ***
[2025-06-04 03:16:49] total 390240
[2025-06-04 03:16:49] -rw-r--r--. 2 boinc boinc 216286866 Jun  3 22:37 ATLAS.root_0
[2025-06-04 03:16:49] -rw-r--r--. 2 boinc boinc     15093 Jun  3 22:37 start_atlas.sh
[2025-06-04 03:16:49] -rw-r--r--. 2 boinc boinc    508884 Jun  3 22:37 input.tar.gz
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc 181134382 Jun  4 03:13 HITS.pool.root.1
[2025-06-04 03:16:49] -rw-------. 1 boinc boinc   1648640 Jun  4 03:16 result.tar.gz
03:16:51 (10704): run_atlas exited; CPU time 51650.146050
03:16:51 (10704): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN