Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:27:03 (28937): wrapper (7.7.26015): starting
21:27:03 (28937): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 21:27:03] Arguments: --nthreads 8
[2025-06-03 21:27:03] Threads: 8
[2025-06-03 21:27:03] Checking for CVMFS
[2025-06-03 21:27:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:27:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:27:04] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:27:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:27:07] 2.11.2.0 3973 32329 95080 146753 3 109 14305014 25165825 3597 130560 0 17571577 99.739 21494389 2705 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 21:27:07] CVMFS is ok
[2025-06-03 21:27:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:27:07] Checking for apptainer binary...
[2025-06-03 21:27:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:27:07] Running /usr/bin/apptainer --version
[2025-06-03 21:27:07] apptainer version 1.3.2-1.el7
[2025-06-03 21:27:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:27:19] cg-vwn471.simple-grid.lan
[2025-06-03 21:27:19] apptainer works
[2025-06-03 21:27:19] Set ATHENA_PROC_NUMBER=8
[2025-06-03 21:27:19] Set ATHENA_CORE_NUMBER=8
[2025-06-03 21:27:19] Starting ATLAS job with PandaID=6677517596
[2025-06-03 21:27:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 00:56:03]  *** The last 200 lines of the pilot log: ***
[2025-06-04 00:56:03] 2025-06-03 22:55:46,060 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 00:56:03] 2025-06-03 22:55:46,061 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 00:56:03] 2025-06-03 22:55:46,061 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 00:56:03] 2025-06-03 22:55:46,065 | INFO     | fitting pss+swap vs Time
[2025-06-04 00:56:03] 2025-06-03 22:55:46,066 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,067 | INFO     | sum of deviations: 9494372602.500002
[2025-06-04 00:56:03] 2025-06-03 22:55:46,068 | INFO     | mean x: 1748985113.5
[2025-06-04 00:56:03] 2025-06-03 22:55:46,068 | INFO     | mean y: 2468730.2598039214
[2025-06-04 00:56:03] 2025-06-03 22:55:46,068 | INFO     | -- intersect: -6305563360.444254
[2025-06-04 00:56:03] 2025-06-03 22:55:46,068 | INFO     | intersect: -6305563360.444254
[2025-06-04 00:56:03] 2025-06-03 22:55:46,068 | INFO     | chi2: 2.4876574573133463
[2025-06-04 00:56:03] 2025-06-03 22:55:46,069 | INFO     | sum of square deviations: 2443580700.0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,070 | INFO     | sum of deviations: 22449358775.0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,071 | INFO     | mean x: 1748984961.0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,071 | INFO     | mean y: 2478974.8844221104
[2025-06-04 00:56:03] 2025-06-03 22:55:46,071 | INFO     | -- intersect: -16065576760.524023
[2025-06-04 00:56:03] 2025-06-03 22:55:46,071 | INFO     | intersect: -16065576760.524023
[2025-06-04 00:56:03] 2025-06-03 22:55:46,071 | INFO     | chi2: 1.7194419586513194
[2025-06-04 00:56:03] 2025-06-03 22:55:46,071 | INFO     | current chi2=1.7194419586513194 (change=30.88108036753961 %)
[2025-06-04 00:56:03] 2025-06-03 22:55:46,072 | INFO     | sum of square deviations: 2263977332.5
[2025-06-04 00:56:03] 2025-06-03 22:55:46,073 | INFO     | sum of deviations: 21700588136.499996
[2025-06-04 00:56:03] 2025-06-03 22:55:46,073 | INFO     | mean x: 1748984808.5
[2025-06-04 00:56:03] 2025-06-03 22:55:46,073 | INFO     | mean y: 2478338.974226804
[2025-06-04 00:56:03] 2025-06-03 22:55:46,073 | INFO     | -- intersect: -16761823335.523136
[2025-06-04 00:56:03] 2025-06-03 22:55:46,073 | INFO     | intersect: -16761823335.523136
[2025-06-04 00:56:03] 2025-06-03 22:55:46,074 | INFO     | chi2: 1.72074466939084
[2025-06-04 00:56:03] 2025-06-03 22:55:46,074 | INFO     | current chi2=1.72074466939084 (change=-0.07576357741916998 %)
[2025-06-04 00:56:03] 2025-06-03 22:55:46,074 | INFO     | right removable region: 193
[2025-06-04 00:56:03] 2025-06-03 22:55:46,074 | INFO     | sum of square deviations: 2443580700.0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,076 | INFO     | sum of deviations: -24179202692.0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,076 | INFO     | mean x: 1748985266.0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,076 | INFO     | mean y: 2495643.793969849
[2025-06-04 00:56:03] 2025-06-03 22:55:46,076 | INFO     | -- intersect: 17308684570.53395
[2025-06-04 00:56:03] 2025-06-03 22:55:46,076 | INFO     | intersect: 17308684570.53395
[2025-06-04 00:56:03] 2025-06-03 22:55:46,076 | INFO     | chi2: 0.9099433449038999
[2025-06-04 00:56:03] 2025-06-03 22:55:46,077 | INFO     | current chi2=0.9099433449038999 (change=63.42167840556985 %)
[2025-06-04 00:56:03] 2025-06-03 22:55:46,077 | INFO     | sum of square deviations: 2263977332.5
[2025-06-04 00:56:03] 2025-06-03 22:55:46,078 | INFO     | sum of deviations: -23445525039.5
[2025-06-04 00:56:03] 2025-06-03 22:55:46,078 | INFO     | mean x: 1748985418.5
[2025-06-04 00:56:03] 2025-06-03 22:55:46,078 | INFO     | mean y: 2494979.7474226803
[2025-06-04 00:56:03] 2025-06-03 22:55:46,079 | INFO     | -- intersect: 18114814760.741577
[2025-06-04 00:56:03] 2025-06-03 22:55:46,079 | INFO     | intersect: 18114814760.741577
[2025-06-04 00:56:03] 2025-06-03 22:55:46,079 | INFO     | chi2: 0.897901375943589
[2025-06-04 00:56:03] 2025-06-03 22:55:46,079 | INFO     | current chi2=0.897901375943589 (change=1.3233756835248596 %)
[2025-06-04 00:56:03] 2025-06-03 22:55:46,079 | INFO     | left removable region: 20
[2025-06-04 00:56:03] 2025-06-03 22:55:46,079 | INFO     | sum of square deviations: 1605470102.0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,081 | INFO     | sum of deviations: 2595333876.9999995
[2025-06-04 00:56:03] 2025-06-03 22:55:46,081 | INFO     | mean x: 1748985388.0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,081 | INFO     | mean y: 2493238.2832369944
[2025-06-04 00:56:03] 2025-06-03 22:55:46,081 | INFO     | -- intersect: -2824841274.0192466
[2025-06-04 00:56:03] 2025-06-03 22:55:46,081 | INFO     | intersect: -2824841274.0192466
[2025-06-04 00:56:03] 2025-06-03 22:55:46,081 | INFO     | chi2: 0.024947333270975924
[2025-06-04 00:56:03] 2025-06-03 22:55:46,081 | INFO     | -- intersect: -2824841274.0192466
[2025-06-04 00:56:03] 2025-06-03 22:55:46,082 | INFO     | current memory leak: 1.62 B/s (using 173 data points, chi2=0.02)
[2025-06-04 00:56:03] 2025-06-03 22:55:46,082 | INFO     | ..............................
[2025-06-04 00:56:03] 2025-06-03 22:55:46,083 | INFO     | . Timing measurements:
[2025-06-04 00:56:03] 2025-06-03 22:55:46,083 | INFO     | . get job = 0 s
[2025-06-04 00:56:03] 2025-06-03 22:55:46,083 | INFO     | . initial setup = 2 s
[2025-06-04 00:56:03] 2025-06-03 22:55:46,083 | INFO     | . payload setup = 13 s
[2025-06-04 00:56:03] 2025-06-03 22:55:46,083 | INFO     | . stage-in = 0 s
[2025-06-04 00:56:03] 2025-06-03 22:55:46,083 | INFO     | . payload execution = 12434 s
[2025-06-04 00:56:03] 2025-06-03 22:55:46,083 | INFO     | . stage-out = 1 s
[2025-06-04 00:56:03] 2025-06-03 22:55:46,083 | INFO     | . log creation = 0 s
[2025-06-04 00:56:03] 2025-06-03 22:55:46,083 | INFO     | ..............................
[2025-06-04 00:56:03] 2025-06-03 22:55:46,199 | INFO     | 
[2025-06-04 00:56:03] 2025-06-03 22:55:46,199 | INFO     | job summary report
[2025-06-04 00:56:03] 2025-06-03 22:55:46,199 | INFO     | --------------------------------------------------
[2025-06-04 00:56:03] 2025-06-03 22:55:46,199 | INFO     | PanDA job id: 6677517596
[2025-06-04 00:56:03] 2025-06-03 22:55:46,199 | INFO     | task id: 45006595
[2025-06-04 00:56:03] 2025-06-03 22:55:46,199 | INFO     | errors: (none)
[2025-06-04 00:56:03] 2025-06-03 22:55:46,199 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 00:56:03] 2025-06-03 22:55:46,200 | INFO     | pilot state: finished 
[2025-06-04 00:56:03] 2025-06-03 22:55:46,200 | INFO     | transexitcode: 0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,200 | INFO     | exeerrorcode: 0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,200 | INFO     | exeerrordiag: 
[2025-06-04 00:56:03] 2025-06-03 22:55:46,200 | INFO     | exitcode: 0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,200 | INFO     | exitmsg: OK
[2025-06-04 00:56:03] 2025-06-03 22:55:46,200 | INFO     | cpuconsumptiontime: 46123 s
[2025-06-04 00:56:03] 2025-06-03 22:55:46,200 | INFO     | nevents: 400
[2025-06-04 00:56:03] 2025-06-03 22:55:46,200 | INFO     | neventsw: 0
[2025-06-04 00:56:03] 2025-06-03 22:55:46,200 | INFO     | pid: 8837
[2025-06-04 00:56:03] 2025-06-03 22:55:46,201 | INFO     | pgrp: 8837
[2025-06-04 00:56:03] 2025-06-03 22:55:46,201 | INFO     | corecount: 8
[2025-06-04 00:56:03] 2025-06-03 22:55:46,201 | INFO     | event service: False
[2025-06-04 00:56:03] 2025-06-03 22:55:46,201 | INFO     | sizes: {0: 2404353, 1: 2405210, 2: 2405210, 11: 2405444, 12: 2405472, 12451: 2434734, 12454: 2443677, 12456: 2443733, 12466: 2443903}
[2025-06-04 00:56:03] 2025-06-03 22:55:46,201 | INFO     | --------------------------------------------------
[2025-06-04 00:56:03] 2025-06-03 22:55:46,201 | INFO     | 
[2025-06-04 00:56:03] 2025-06-03 22:55:46,201 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-06-04 00:56:03] 2025-06-03 22:55:46,281 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,281 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,281 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,281 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,282 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,282 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,282 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,282 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,282 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,282 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,282 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,282 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,282 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,283 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,283 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,283 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,283 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,283 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 00:56:03] 2025-06-03 22:55:46,283 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,283 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 00:56:03] 2025-06-03 22:55:46,283 | INFO     | job 6677517596 has completed (purged errors)
[2025-06-04 00:56:03] 2025-06-03 22:55:46,283 | INFO     | overall cleanup function is called
[2025-06-04 00:56:03] 2025-06-03 22:55:47,293 | INFO     | --- collectZombieJob: --- 10, [8837]
[2025-06-04 00:56:03] 2025-06-03 22:55:47,293 | INFO     | zombie collector waiting for pid 8837
[2025-06-04 00:56:03] 2025-06-03 22:55:47,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 00:56:03] 2025-06-03 22:55:47,293 | INFO     | collected zombie processes
[2025-06-04 00:56:03] 2025-06-03 22:55:47,293 | INFO     | will attempt to kill all subprocesses of pid=8837
[2025-06-04 00:56:03] 2025-06-03 22:55:47,403 | INFO     | process IDs to be killed: [8837] (in reverse order)
[2025-06-04 00:56:03] 2025-06-03 22:55:47,494 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 00:56:03] 2025-06-03 22:55:47,495 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 00:56:03] 2025-06-03 22:55:47,500 | INFO     | did not find any defunct processes belonging to 8837
[2025-06-04 00:56:03] 2025-06-03 22:55:47,505 | INFO     | did not find any defunct processes belonging to 8837
[2025-06-04 00:56:03] 2025-06-03 22:55:47,506 | INFO     | ready for new job
[2025-06-04 00:56:03] 2025-06-03 22:55:47,506 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 00:56:03] 2025-06-03 22:55:47,508 | INFO     | **************************************
[2025-06-04 00:56:03] 2025-06-03 22:55:47,508 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 00:56:03] 2025-06-03 22:55:47,508 | INFO     | **************************************
[2025-06-04 00:56:03] 2025-06-03 22:55:47,508 | INFO     | 
[2025-06-04 00:56:03] 2025-06-03 22:55:47,509 | INFO     | pilot is running in a VM
[2025-06-04 00:56:03] 2025-06-03 22:55:47,509 | INFO     | architecture information:
[2025-06-04 00:56:03] 2025-06-03 22:55:47,512 | INFO     | executing command: cat /etc/os-release
[2025-06-04 00:56:03] 2025-06-03 22:55:47,550 | INFO     | cat /etc/os-release:
[2025-06-04 00:56:03] NAME="CentOS Linux"
[2025-06-04 00:56:03] VERSION="7 (Core)"
[2025-06-04 00:56:03] ID="centos"
[2025-06-04 00:56:03] ID_LIKE="rhel fedora"
[2025-06-04 00:56:03] VERSION_ID="7"
[2025-06-04 00:56:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 00:56:03] ANSI_COLOR="0;31"
[2025-06-04 00:56:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 00:56:03] HOME_URL="https://www.centos.org/"
[2025-06-04 00:56:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 00:56:03] 
[2025-06-04 00:56:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 00:56:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 00:56:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 00:56:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 00:56:03] 
[2025-06-04 00:56:03] 2025-06-03 22:55:47,550 | INFO     | **************************************
[2025-06-04 00:56:03] 2025-06-03 22:55:48,054 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-06-04 00:56:03] 2025-06-03 22:55:48,140 | INFO     | sufficient remaining disk space (497072209920 B)
[2025-06-04 00:56:03] 2025-06-03 22:55:48,141 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 00:56:03] 2025-06-03 22:55:48,141 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 00:56:03] 2025-06-03 22:55:48,141 | INFO     | update_server=False
[2025-06-04 00:56:03] 2025-06-03 22:55:48,141 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 00:56:03] 2025-06-03 22:55:48,141 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 00:56:03] 2025-06-03 22:55:48,142 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 00:56:03] 2025-06-03 22:55:48,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 00:56:03] 2025-06-03 22:55:48,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 00:56:03] 2025-06-03 22:55:48,142 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:56:03] 2025-06-03 22:55:48,143 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 00:56:03] 2025-06-03 22:55:48,322 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 00:56:03] 2025-06-03 22:55:48,322 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 00:56:03] 2025-06-03 22:55:48,322 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:56:03] 2025-06-03 22:55:48,322 | INFO     | will abort loop
[2025-06-04 00:56:03] 2025-06-03 22:55:48,332 | INFO     | all data control threads have been joined
[2025-06-04 00:56:03] 2025-06-03 22:55:48,351 | INFO     | all payload control threads have been joined
[2025-06-04 00:56:03] 2025-06-03 22:55:49,146 | INFO     | [job] retrieve thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:49,147 | INFO     | [job] queue monitor thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:49,259 | INFO     | all job control threads have been joined
[2025-06-04 00:56:03] 2025-06-03 22:55:49,329 | INFO     | [job] job monitor thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:49,338 | INFO     | [data] control thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:49,357 | INFO     | [payload] control thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:49,564 | INFO     | [job] validate thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:49,593 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:49,680 | INFO     | [data] copytool_in thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:49,888 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:49,920 | INFO     | [payload] failed_post thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:50,149 | INFO     | [data] copytool_out thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:50,183 | INFO     | [payload] validate_post thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:50,265 | INFO     | [job] control thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:50,536 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:50,633 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:51,347 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 00:56:03] 2025-06-03 22:55:55,355 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 00:56:03] 2025-06-03 22:55:56,196 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139726069737280)>', '<ExcThread(monitor, started 139725411182336)>']
[2025-06-04 00:56:03] 2025-06-03 22:55:57,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 00:56:03] 2025-06-03 22:55:57,192 | INFO     | [monitor] control thread has ended
[2025-06-04 00:56:03] 2025-06-03 22:56:01,222 | INFO     | all workflow threads have been joined
[2025-06-04 00:56:03] 2025-06-03 22:56:01,222 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 00:56:03] 2025-06-03 22:56:01,222 | INFO     | traces error code: 0
[2025-06-04 00:56:03] 2025-06-03 22:56:01,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 00:56:03] 2025-06-03 22:56:01,464 [wrapper] ==== pilot stdout END ====
[2025-06-04 00:56:03] 2025-06-03 22:56:01,509 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 00:56:03] 2025-06-03 22:56:01,553 [wrapper] pilotpid: 32631
[2025-06-04 00:56:03] 2025-06-03 22:56:01,630 [wrapper] Pilot exit status: 0
[2025-06-04 00:56:03] 2025-06-03 22:56:01,928 [wrapper] pandaids: 6677517596
[2025-06-04 00:56:03] 2025-06-03 22:56:02,313 [wrapper] cleanup supervisor_pilot  7852 32632
[2025-06-04 00:56:03] 2025-06-03 22:56:02,336 [wrapper] Test setup, not cleaning
[2025-06-04 00:56:03] 2025-06-03 22:56:02,344 [wrapper] apfmon messages muted
[2025-06-04 00:56:03] 2025-06-03 22:56:02,347 [wrapper] ==== wrapper stdout END ====
[2025-06-04 00:56:03] 2025-06-03 22:56:02,360 [wrapper] ==== wrapper stderr END ====
[2025-06-04 00:56:03]  *** Error codes and diagnostics ***
[2025-06-04 00:56:03]     "exeErrorCode": 0,
[2025-06-04 00:56:03]     "exeErrorDiag": "",
[2025-06-04 00:56:03]     "pilotErrorCode": 0,
[2025-06-04 00:56:03]     "pilotErrorDiag": "",
[2025-06-04 00:56:03]  *** Listing of results directory ***
[2025-06-04 00:56:03] total 393952
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc    495897 Jun  3 09:38 pilot3.tar.gz
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc      5111 Jun  3 09:43 queuedata.json
[2025-06-04 00:56:03] -rwx------. 1 boinc boinc     37140 Jun  3 09:43 runpilot2-wrapper.sh
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc       100 Jun  3 21:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 00:56:03] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 21:27 run_atlas
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc       105 Jun  3 21:27 job.xml
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc      6393 Jun  3 21:27 init_data.xml
[2025-06-04 00:56:03] -rw-r--r--. 2 boinc boinc 217492215 Jun  3 21:27 EVNT.45006593._000977.pool.root.1
[2025-06-04 00:56:03] -rw-r--r--. 2 boinc boinc     15093 Jun  3 21:27 start_atlas.sh
[2025-06-04 00:56:03] drwxrwx--x. 2 boinc boinc        68 Jun  3 21:27 shared
[2025-06-04 00:56:03] -rw-r--r--. 2 boinc boinc    508878 Jun  3 21:27 input.tar.gz
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc         0 Jun  3 21:27 boinc_lockfile
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc      2523 Jun  3 21:27 pandaJob.out
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc    986893 Jun  3 21:27 agis_schedconf.cvmfs.json
[2025-06-04 00:56:03] drwx------. 4 boinc boinc      4096 Jun  3 21:27 pilot3
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc       531 Jun  4 00:54 boinc_task_state.xml
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc 179164775 Jun  4 00:54 HITS.45006595._024430.pool.root.1
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc      1018 Jun  4 00:55 memory_monitor_summary.json
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc        95 Jun  4 00:55 pilot_heartbeat.json
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc   1603667 Jun  4 00:55 agis_ddmendpoints.agis.ALL.json
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc    379894 Jun  4 00:55 log.45006595._024430.job.log.tgz.1
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc      7698 Jun  4 00:55 heartbeat.json
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc      4726 Jun  4 00:56 pilotlog.txt
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc   1084656 Jun  4 00:56 log.45006595._024430.job.log.1
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc        28 Jun  4 00:56 wrapper_checkpoint.txt
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc      8192 Jun  4 00:56 boinc_mmap_file
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc       357 Jun  4 00:56 output.list
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc       620 Jun  4 00:56 runtime_log
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc   1484800 Jun  4 00:56 result.tar.gz
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc      8673 Jun  4 00:56 runtime_log.err
[2025-06-04 00:56:03] -rw-------. 1 boinc boinc       657 Jun  4 00:56 nwzLDmnTbg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmukiKDmm77abn.diag
[2025-06-04 00:56:03] -rw-r--r--. 1 boinc boinc     20503 Jun  4 00:56 stderr.txt
[2025-06-04 00:56:04] HITS file was successfully produced:
[2025-06-04 00:56:04] -rw-------. 1 boinc boinc 179164775 Jun  4 00:54 shared/HITS.pool.root.1
[2025-06-04 00:56:04]  *** Contents of shared directory: ***
[2025-06-04 00:56:04] total 389332
[2025-06-04 00:56:04] -rw-r--r--. 2 boinc boinc 217492215 Jun  3 21:27 ATLAS.root_0
[2025-06-04 00:56:04] -rw-r--r--. 2 boinc boinc     15093 Jun  3 21:27 start_atlas.sh
[2025-06-04 00:56:04] -rw-r--r--. 2 boinc boinc    508878 Jun  3 21:27 input.tar.gz
[2025-06-04 00:56:04] -rw-------. 1 boinc boinc 179164775 Jun  4 00:54 HITS.pool.root.1
[2025-06-04 00:56:04] -rw-------. 1 boinc boinc   1484800 Jun  4 00:56 result.tar.gz
00:56:05 (28937): run_atlas exited; CPU time 46266.984101
00:56:05 (28937): called boinc_finish(0)

</stderr_txt>
]]>

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