Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:23:32 (5025): wrapper (7.7.26015): starting
19:23:32 (5025): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 19:23:32] Arguments: --nthreads 8
[2025-06-03 19:23:32] Threads: 8
[2025-06-03 19:23:32] Checking for CVMFS
[2025-06-03 19:23:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 19:23:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 19:23:33] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 19:23:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 19:23:34] 2.11.2.0 24901 32051 92452 146749 1 249 13612654 25165824 3519 130560 0 16714567 99.788 18965516 2136 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 19:23:34] CVMFS is ok
[2025-06-03 19:23:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 19:23:34] Checking for apptainer binary...
[2025-06-03 19:23:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 19:23:34] Running /usr/bin/apptainer --version
[2025-06-03 19:23:34] apptainer version 1.3.2-1.el7
[2025-06-03 19:23:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 19:23:42] cg-vwn281.simple-grid.lan
[2025-06-03 19:23:42] apptainer works
[2025-06-03 19:23:42] Set ATHENA_PROC_NUMBER=8
[2025-06-03 19:23:42] Set ATHENA_CORE_NUMBER=8
[2025-06-03 19:23:42] Starting ATLAS job with PandaID=6677516382
[2025-06-03 19:23:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:30:00]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:30:00] 2025-06-03 21:12:33,001 | INFO     | extracted standard info from prmon json
[2025-06-03 23:30:00] 2025-06-03 21:12:33,001 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:30:00] 2025-06-03 21:12:33,001 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:30:00] 2025-06-03 21:12:33,002 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:30:00] 2025-06-03 21:12:33,002 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:30:00] 2025-06-03 21:12:33,007 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:30:00] 2025-06-03 21:12:33,011 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,012 | INFO     | sum of deviations: 109637363386.0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,012 | INFO     | mean x: 1748978581.5
[2025-06-03 23:30:00] 2025-06-03 21:12:33,013 | INFO     | mean y: 2408553.830188679
[2025-06-03 23:30:00] 2025-06-03 21:12:33,013 | INFO     | -- intersect: -64900884157.60054
[2025-06-03 23:30:00] 2025-06-03 21:12:33,013 | INFO     | intersect: -64900884157.60054
[2025-06-03 23:30:00] 2025-06-03 21:12:33,013 | INFO     | chi2: 8.681103238482715
[2025-06-03 23:30:00] 2025-06-03 21:12:33,014 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,015 | INFO     | sum of deviations: 121258789122.00002
[2025-06-03 23:30:00] 2025-06-03 21:12:33,015 | INFO     | mean x: 1748978429.0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,015 | INFO     | mean y: 2417034.7004830916
[2025-06-03 23:30:00] 2025-06-03 21:12:33,016 | INFO     | -- intersect: -77108941671.53523
[2025-06-03 23:30:00] 2025-06-03 21:12:33,016 | INFO     | intersect: -77108941671.53523
[2025-06-03 23:30:00] 2025-06-03 21:12:33,016 | INFO     | chi2: 7.978432492898236
[2025-06-03 23:30:00] 2025-06-03 21:12:33,016 | INFO     | current chi2=7.978432492898236 (change=8.094256297628041 %)
[2025-06-03 23:30:00] 2025-06-03 21:12:33,016 | INFO     | right removable region: 206
[2025-06-03 23:30:00] 2025-06-03 21:12:33,017 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,018 | INFO     | sum of deviations: 35163894445.999985
[2025-06-03 23:30:00] 2025-06-03 21:12:33,018 | INFO     | mean x: 1748978734.0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,018 | INFO     | mean y: 2464156.120772947
[2025-06-03 23:30:00] 2025-06-03 21:12:33,019 | INFO     | -- intersect: -22359099658.140717
[2025-06-03 23:30:00] 2025-06-03 21:12:33,019 | INFO     | intersect: -22359099658.140717
[2025-06-03 23:30:00] 2025-06-03 21:12:33,019 | INFO     | chi2: 3.4090786071516015
[2025-06-03 23:30:00] 2025-06-03 21:12:33,019 | INFO     | current chi2=3.4090786071516015 (change=60.72989211740511 %)
[2025-06-03 23:30:00] 2025-06-03 21:12:33,019 | INFO     | sum of square deviations: 2555770710.5
[2025-06-03 23:30:00] 2025-06-03 21:12:33,021 | INFO     | sum of deviations: -16033460606.5
[2025-06-03 23:30:00] 2025-06-03 21:12:33,021 | INFO     | mean x: 1748978886.5
[2025-06-03 23:30:00] 2025-06-03 21:12:33,021 | INFO     | mean y: 2504195.876237624
[2025-06-03 23:30:00] 2025-06-03 21:12:33,021 | INFO     | -- intersect: 10974608995.06299
[2025-06-03 23:30:00] 2025-06-03 21:12:33,022 | INFO     | intersect: 10974608995.06299
[2025-06-03 23:30:00] 2025-06-03 21:12:33,022 | INFO     | chi2: 1.0528254456437085
[2025-06-03 23:30:00] 2025-06-03 21:12:33,022 | INFO     | current chi2=1.0528254456437085 (change=69.11700881771749 %)
[2025-06-03 23:30:00] 2025-06-03 21:12:33,022 | INFO     | sum of square deviations: 2370641658.0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,024 | INFO     | sum of deviations: -29703919927.0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,024 | INFO     | mean x: 1748979039.0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,024 | INFO     | mean y: 2515364.426395939
[2025-06-03 23:30:00] 2025-06-03 21:12:33,024 | INFO     | -- intersect: 21917060379.33451
[2025-06-03 23:30:00] 2025-06-03 21:12:33,024 | INFO     | intersect: 21917060379.33451
[2025-06-03 23:30:00] 2025-06-03 21:12:33,025 | INFO     | chi2: 0.8157344875955076
[2025-06-03 23:30:00] 2025-06-03 21:12:33,025 | INFO     | current chi2=0.8157344875955076 (change=22.51949352375702 %)
[2025-06-03 23:30:00] 2025-06-03 21:12:33,025 | INFO     | left removable region: 30
[2025-06-03 23:30:00] 2025-06-03 21:12:33,025 | INFO     | sum of square deviations: 1690450300.0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,027 | INFO     | sum of deviations: -15887814200.5
[2025-06-03 23:30:00] 2025-06-03 21:12:33,030 | INFO     | mean x: 1748979313.5
[2025-06-03 23:30:00] 2025-06-03 21:12:33,030 | INFO     | mean y: 2527719.0056818184
[2025-06-03 23:30:00] 2025-06-03 21:12:33,030 | INFO     | -- intersect: 16440430905.751863
[2025-06-03 23:30:00] 2025-06-03 21:12:33,030 | INFO     | intersect: 16440430905.751863
[2025-06-03 23:30:00] 2025-06-03 21:12:33,031 | INFO     | chi2: 0.014054051758290356
[2025-06-03 23:30:00] 2025-06-03 21:12:33,031 | INFO     | -- intersect: 16440430905.751863
[2025-06-03 23:30:00] 2025-06-03 21:12:33,031 | INFO     | current memory leak: -9.40 B/s (using 176 data points, chi2=0.01)
[2025-06-03 23:30:00] 2025-06-03 21:12:33,032 | INFO     | ..............................
[2025-06-03 23:30:00] 2025-06-03 21:12:33,032 | INFO     | . Timing measurements:
[2025-06-03 23:30:00] 2025-06-03 21:12:33,032 | INFO     | . get job = 0 s
[2025-06-03 23:30:00] 2025-06-03 21:12:33,032 | INFO     | . initial setup = 7 s
[2025-06-03 23:30:00] 2025-06-03 21:12:33,032 | INFO     | . payload setup = 191 s
[2025-06-03 23:30:00] 2025-06-03 21:12:33,032 | INFO     | . stage-in = 0 s
[2025-06-03 23:30:00] 2025-06-03 21:12:33,033 | INFO     | . payload execution = 13060 s
[2025-06-03 23:30:00] 2025-06-03 21:12:33,033 | INFO     | . stage-out = 3 s
[2025-06-03 23:30:00] 2025-06-03 21:12:33,033 | INFO     | . log creation = 1 s
[2025-06-03 23:30:00] 2025-06-03 21:12:33,033 | INFO     | ..............................
[2025-06-03 23:30:00] 2025-06-03 21:12:33,193 | INFO     | 
[2025-06-03 23:30:00] 2025-06-03 21:12:33,194 | INFO     | job summary report
[2025-06-03 23:30:00] 2025-06-03 21:12:33,194 | INFO     | --------------------------------------------------
[2025-06-03 23:30:00] 2025-06-03 21:12:33,194 | INFO     | PanDA job id: 6677516382
[2025-06-03 23:30:00] 2025-06-03 21:12:33,194 | INFO     | task id: 45006595
[2025-06-03 23:30:00] 2025-06-03 21:12:33,194 | INFO     | errors: (none)
[2025-06-03 23:30:00] 2025-06-03 21:12:33,194 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:30:00] 2025-06-03 21:12:33,194 | INFO     | pilot state: finished 
[2025-06-03 23:30:00] 2025-06-03 21:12:33,194 | INFO     | transexitcode: 0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,194 | INFO     | exeerrorcode: 0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,195 | INFO     | exeerrordiag: 
[2025-06-03 23:30:00] 2025-06-03 21:12:33,195 | INFO     | exitcode: 0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,195 | INFO     | exitmsg: OK
[2025-06-03 23:30:00] 2025-06-03 21:12:33,195 | INFO     | cpuconsumptiontime: 48058 s
[2025-06-03 23:30:00] 2025-06-03 21:12:33,195 | INFO     | nevents: 400
[2025-06-03 23:30:00] 2025-06-03 21:12:33,195 | INFO     | neventsw: 0
[2025-06-03 23:30:00] 2025-06-03 21:12:33,195 | INFO     | pid: 20028
[2025-06-03 23:30:00] 2025-06-03 21:12:33,195 | INFO     | pgrp: 20028
[2025-06-03 23:30:00] 2025-06-03 21:12:33,195 | INFO     | corecount: 8
[2025-06-03 23:30:00] 2025-06-03 21:12:33,195 | INFO     | event service: False
[2025-06-03 23:30:00] 2025-06-03 21:12:33,196 | INFO     | sizes: {0: 2405011, 1: 2405210, 12: 2405210, 23: 2405238, 33: 2405266, 44: 2405322, 55: 2405478, 66: 2405506, 76: 2405534, 87: 2405590, 91: 2405824, 98: 2406132, 1
[2025-06-03 23:30:00] 2025-06-03 21:12:33,196 | INFO     | --------------------------------------------------
[2025-06-03 23:30:00] 2025-06-03 21:12:33,196 | INFO     | 
[2025-06-03 23:30:00] 2025-06-03 21:12:33,196 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-03 23:30:00] 2025-06-03 21:12:33,253 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,256 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,256 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,256 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,256 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,257 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,257 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,257 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,257 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,257 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,257 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,257 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,257 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,257 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,258 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,258 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,258 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:30:00] 2025-06-03 21:12:33,258 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,258 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:30:00] 2025-06-03 21:12:33,258 | INFO     | job 6677516382 has completed (purged errors)
[2025-06-03 23:30:00] 2025-06-03 21:12:33,258 | INFO     | overall cleanup function is called
[2025-06-03 23:30:00] 2025-06-03 21:12:34,268 | INFO     | --- collectZombieJob: --- 10, [20028]
[2025-06-03 23:30:00] 2025-06-03 21:12:34,268 | INFO     | zombie collector waiting for pid 20028
[2025-06-03 23:30:00] 2025-06-03 21:12:34,268 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:30:00] 2025-06-03 21:12:34,268 | INFO     | collected zombie processes
[2025-06-03 23:30:00] 2025-06-03 21:12:34,269 | INFO     | will attempt to kill all subprocesses of pid=20028
[2025-06-03 23:30:00] 2025-06-03 21:12:34,419 | INFO     | process IDs to be killed: [20028] (in reverse order)
[2025-06-03 23:30:00] 2025-06-03 21:12:35,144 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:30:00] 2025-06-03 21:12:35,145 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:30:00] 2025-06-03 21:12:35,149 | INFO     | did not find any defunct processes belonging to 20028
[2025-06-03 23:30:00] 2025-06-03 21:12:35,154 | INFO     | did not find any defunct processes belonging to 20028
[2025-06-03 23:30:00] 2025-06-03 21:12:35,154 | INFO     | ready for new job
[2025-06-03 23:30:00] 2025-06-03 21:12:35,154 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:30:00] 2025-06-03 21:12:35,156 | INFO     | **************************************
[2025-06-03 23:30:00] 2025-06-03 21:12:35,157 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:30:00] 2025-06-03 21:12:35,157 | INFO     | **************************************
[2025-06-03 23:30:00] 2025-06-03 21:12:35,157 | INFO     | 
[2025-06-03 23:30:00] 2025-06-03 21:12:35,157 | INFO     | pilot is running in a VM
[2025-06-03 23:30:00] 2025-06-03 21:12:35,158 | INFO     | architecture information:
[2025-06-03 23:30:00] 2025-06-03 21:12:35,160 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:30:00] 2025-06-03 21:12:35,413 | INFO     | cat /etc/os-release:
[2025-06-03 23:30:00] NAME="CentOS Linux"
[2025-06-03 23:30:00] VERSION="7 (Core)"
[2025-06-03 23:30:00] ID="centos"
[2025-06-03 23:30:00] ID_LIKE="rhel fedora"
[2025-06-03 23:30:00] VERSION_ID="7"
[2025-06-03 23:30:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:30:00] ANSI_COLOR="0;31"
[2025-06-03 23:30:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:30:00] HOME_URL="https://www.centos.org/"
[2025-06-03 23:30:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:30:00] 
[2025-06-03 23:30:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:30:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:30:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:30:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:30:00] 
[2025-06-03 23:30:00] 2025-06-03 21:12:35,413 | INFO     | **************************************
[2025-06-03 23:30:00] 2025-06-03 21:12:35,917 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-03 23:30:00] 2025-06-03 21:12:36,053 | INFO     | sufficient remaining disk space (497079549952 B)
[2025-06-03 23:30:00] 2025-06-03 21:12:36,053 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:30:00] 2025-06-03 21:12:36,054 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:30:00] 2025-06-03 21:12:36,054 | INFO     | update_server=False
[2025-06-03 23:30:00] 2025-06-03 21:12:36,054 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:30:00] 2025-06-03 21:12:36,055 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:30:00] 2025-06-03 21:12:36,055 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:30:00] 2025-06-03 21:12:36,056 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:30:00] 2025-06-03 21:12:36,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:30:00] 2025-06-03 21:12:36,463 | INFO     | all payload control threads have been joined
[2025-06-03 23:30:00] 2025-06-03 21:12:36,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:30:00] 2025-06-03 21:12:36,646 | INFO     | aborting loop
[2025-06-03 23:30:00] 2025-06-03 21:12:36,673 | INFO     | all data control threads have been joined
[2025-06-03 23:30:00] 2025-06-03 21:12:37,060 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:37,128 | INFO     | [job] validate thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:37,320 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:37,388 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:30:00] 2025-06-03 21:12:37,469 | INFO     | [payload] control thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:37,628 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:37,647 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:37,652 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:37,679 | INFO     | [data] control thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:37,709 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:37,742 | INFO     | all job control threads have been joined
[2025-06-03 23:30:00] 2025-06-03 21:12:37,873 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:38,017 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:38,208 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:30:00] 2025-06-03 21:12:38,277 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:30:00] 2025-06-03 21:12:38,305 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:38,748 | INFO     | [job] control thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:39,214 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:39,395 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:42,286 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:30:00] 2025-06-03 21:12:44,326 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140134109693760)>', '<ExcThread(monitor, started 140133818943232)>']
[2025-06-03 23:30:00] 2025-06-03 21:12:45,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:30:00] 2025-06-03 21:12:45,107 | INFO     | [monitor] control thread has ended
[2025-06-03 23:30:00] 2025-06-03 21:12:49,352 | INFO     | all workflow threads have been joined
[2025-06-03 23:30:00] 2025-06-03 21:12:49,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:30:00] 2025-06-03 21:12:49,353 | INFO     | traces error code: 0
[2025-06-03 23:30:00] 2025-06-03 21:12:49,353 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:30:00] 2025-06-03 21:12:49,631 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:30:00] 2025-06-03 21:12:49,660 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:30:00] 2025-06-03 21:12:49,806 [wrapper] pilotpid: 12627
[2025-06-03 23:30:00] 2025-06-03 21:12:49,880 [wrapper] Pilot exit status: 0
[2025-06-03 23:30:00] 2025-06-03 21:12:50,288 [wrapper] pandaids: 6677516382
[2025-06-03 23:30:00] 2025-06-03 21:12:50,962 [wrapper] cleanup supervisor_pilot 30303 12628
[2025-06-03 23:30:00] 2025-06-03 21:12:51,021 [wrapper] Test setup, not cleaning
[2025-06-03 23:30:00] 2025-06-03 21:12:51,141 [wrapper] apfmon messages muted
[2025-06-03 23:30:00] 2025-06-03 21:12:51,264 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:30:00] 2025-06-03 21:12:51,403 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:30:00]  *** Error codes and diagnostics ***
[2025-06-03 23:30:00]     "exeErrorCode": 0,
[2025-06-03 23:30:00]     "exeErrorDiag": "",
[2025-06-03 23:30:00]     "pilotErrorCode": 0,
[2025-06-03 23:30:00]     "pilotErrorDiag": "",
[2025-06-03 23:30:00]  *** Listing of results directory ***
[2025-06-03 23:30:00] total 390656
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc    495897 Jun  3 09:23 pilot3.tar.gz
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc      5111 Jun  3 09:35 queuedata.json
[2025-06-03 23:30:00] -rwx------. 1 boinc boinc     37140 Jun  3 09:35 runpilot2-wrapper.sh
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc       100 Jun  3 19:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:30:00] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 19:23 run_atlas
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc       105 Jun  3 19:23 job.xml
[2025-06-03 23:30:00] -rw-r--r--. 2 boinc boinc 217750938 Jun  3 19:23 EVNT.45006593._000959.pool.root.1
[2025-06-03 23:30:00] -rw-r--r--. 2 boinc boinc     15093 Jun  3 19:23 start_atlas.sh
[2025-06-03 23:30:00] drwxrwx--x. 2 boinc boinc        68 Jun  3 19:23 shared
[2025-06-03 23:30:00] -rw-r--r--. 2 boinc boinc    508879 Jun  3 19:23 input.tar.gz
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc      6390 Jun  3 19:23 init_data.xml
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc         0 Jun  3 19:23 boinc_lockfile
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc      2524 Jun  3 19:23 pandaJob.out
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc    983734 Jun  3 19:26 agis_schedconf.cvmfs.json
[2025-06-03 23:30:00] drwx------. 4 boinc boinc      4096 Jun  3 19:26 pilot3
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc 175400389 Jun  3 23:09 HITS.45006595._023972.pool.root.1
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc       531 Jun  3 23:10 boinc_task_state.xml
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc      1014 Jun  3 23:10 memory_monitor_summary.json
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc   1603667 Jun  3 23:11 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc    375110 Jun  3 23:11 log.45006595._023972.job.log.tgz.1
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc        95 Jun  3 23:12 pilot_heartbeat.json
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc      7689 Jun  3 23:12 heartbeat.json
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc      4539 Jun  3 23:12 pilotlog.txt
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc   1153245 Jun  3 23:12 log.45006595._023972.job.log.1
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc       357 Jun  3 23:12 output.list
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc       620 Jun  3 23:12 runtime_log
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc   1546240 Jun  3 23:12 result.tar.gz
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc      8659 Jun  3 23:12 runtime_log.err
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc       656 Jun  3 23:12 BIHLDmqMbg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmToXKDm8zqWon.diag
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc      8192 Jun  3 23:30 boinc_mmap_file
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc        28 Jun  3 23:30 wrapper_checkpoint.txt
[2025-06-03 23:30:00] -rw-r--r--. 1 boinc boinc     20504 Jun  3 23:30 stderr.txt
[2025-06-03 23:30:00] HITS file was successfully produced:
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc 175400389 Jun  3 23:09 shared/HITS.pool.root.1
[2025-06-03 23:30:00]  *** Contents of shared directory: ***
[2025-06-03 23:30:00] total 385968
[2025-06-03 23:30:00] -rw-r--r--. 2 boinc boinc 217750938 Jun  3 19:23 ATLAS.root_0
[2025-06-03 23:30:00] -rw-r--r--. 2 boinc boinc     15093 Jun  3 19:23 start_atlas.sh
[2025-06-03 23:30:00] -rw-r--r--. 2 boinc boinc    508879 Jun  3 19:23 input.tar.gz
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc 175400389 Jun  3 23:09 HITS.pool.root.1
[2025-06-03 23:30:00] -rw-------. 1 boinc boinc   1546240 Jun  3 23:12 result.tar.gz
23:30:02 (5025): run_atlas exited; CPU time 48246.858533
23:30:02 (5025): called boinc_finish(0)

</stderr_txt>
]]>

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