Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:47:30 (11192): wrapper (7.7.26015): starting
21:47:30 (11192): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 21:47:30] Arguments: --nthreads 8
[2025-06-03 21:47:30] Threads: 8
[2025-06-03 21:47:30] Checking for CVMFS
[2025-06-03 21:47:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:47:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:47:31] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:47:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:47:32] 2.11.2.0 7869 32220 89552 146753 3 16 25102078 25165825 3498 130560 0 15994377 99.767 19349325 1992 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 21:47:32] CVMFS is ok
[2025-06-03 21:47:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:47:32] Checking for apptainer binary...
[2025-06-03 21:47:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:47:32] Running /usr/bin/apptainer --version
[2025-06-03 21:47:33] apptainer version 1.3.2-1.el7
[2025-06-03 21:47:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:47:46] cg-vwn276.simple-grid.lan
[2025-06-03 21:47:46] apptainer works
[2025-06-03 21:47:46] Set ATHENA_PROC_NUMBER=8
[2025-06-03 21:47:46] Set ATHENA_CORE_NUMBER=8
[2025-06-03 21:47:46] Starting ATLAS job with PandaID=6677549044
[2025-06-03 21:47:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 01:43:46]  *** The last 200 lines of the pilot log: ***
[2025-06-04 01:43:46] 2025-06-03 23:43:26,558 | INFO     | extracted standard info from prmon json
[2025-06-04 01:43:46] 2025-06-03 23:43:26,558 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 01:43:46] 2025-06-03 23:43:26,558 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 01:43:46] 2025-06-03 23:43:26,558 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 01:43:46] 2025-06-03 23:43:26,559 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 01:43:46] 2025-06-03 23:43:26,564 | INFO     | fitting pss+swap vs Time
[2025-06-04 01:43:46] 2025-06-03 23:43:26,564 | INFO     | sum of square deviations: 3301699115.0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,566 | INFO     | sum of deviations: 89987726612.99998
[2025-06-04 01:43:46] 2025-06-03 23:43:26,567 | INFO     | mean x: 1748987406.5
[2025-06-04 01:43:46] 2025-06-03 23:43:26,567 | INFO     | mean y: 2407043.0727272728
[2025-06-04 01:43:46] 2025-06-03 23:43:26,567 | INFO     | -- intersect: -47666200877.822525
[2025-06-04 01:43:46] 2025-06-03 23:43:26,567 | INFO     | intersect: -47666200877.822525
[2025-06-04 01:43:46] 2025-06-03 23:43:26,567 | INFO     | chi2: 6.943108900457152
[2025-06-04 01:43:46] 2025-06-03 23:43:26,568 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,570 | INFO     | sum of deviations: 102091826500.00002
[2025-06-04 01:43:46] 2025-06-03 23:43:26,570 | INFO     | mean x: 1748987254.0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,570 | INFO     | mean y: 2415246.1581395348
[2025-06-04 01:43:46] 2025-06-03 23:43:26,570 | INFO     | -- intersect: -57939548473.79764
[2025-06-04 01:43:46] 2025-06-03 23:43:26,570 | INFO     | intersect: -57939548473.79764
[2025-06-04 01:43:46] 2025-06-03 23:43:26,571 | INFO     | chi2: 6.230815885025544
[2025-06-04 01:43:46] 2025-06-03 23:43:26,571 | INFO     | current chi2=6.230815885025544 (change=10.258992414546581 %)
[2025-06-04 01:43:46] 2025-06-03 23:43:26,571 | INFO     | right removable region: 214
[2025-06-04 01:43:46] 2025-06-03 23:43:26,571 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,573 | INFO     | sum of deviations: 15870907471.00002
[2025-06-04 01:43:46] 2025-06-03 23:43:26,573 | INFO     | mean x: 1748987559.0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,573 | INFO     | mean y: 2458356.2511627907
[2025-06-04 01:43:46] 2025-06-03 23:43:26,573 | INFO     | -- intersect: -9005037510.736115
[2025-06-04 01:43:46] 2025-06-03 23:43:26,574 | INFO     | intersect: -9005037510.736115
[2025-06-04 01:43:46] 2025-06-03 23:43:26,574 | INFO     | chi2: 2.2207379967543748
[2025-06-04 01:43:46] 2025-06-03 23:43:26,574 | INFO     | current chi2=2.2207379967543748 (change=68.0152215874339 %)
[2025-06-04 01:43:46] 2025-06-03 23:43:26,574 | INFO     | sum of square deviations: 2871616632.5
[2025-06-04 01:43:46] 2025-06-03 23:43:26,576 | INFO     | sum of deviations: -20242083291.0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,576 | INFO     | mean x: 1748987711.5
[2025-06-04 01:43:46] 2025-06-03 23:43:26,576 | INFO     | mean y: 2484400.438095238
[2025-06-04 01:43:46] 2025-06-03 23:43:26,577 | INFO     | -- intersect: 12331133890.219345
[2025-06-04 01:43:46] 2025-06-03 23:43:26,577 | INFO     | intersect: 12331133890.219345
[2025-06-04 01:43:46] 2025-06-03 23:43:26,577 | INFO     | chi2: 0.8975264660908848
[2025-06-04 01:43:46] 2025-06-03 23:43:26,577 | INFO     | current chi2=0.8975264660908848 (change=59.58431533109144 %)
[2025-06-04 01:43:46] 2025-06-03 23:43:26,577 | INFO     | sum of square deviations: 2671343110.0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,579 | INFO     | sum of deviations: -21341832649.0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,579 | INFO     | mean x: 1748987864.0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,579 | INFO     | mean y: 2485204.7804878047
[2025-06-04 01:43:46] 2025-06-03 23:43:26,579 | INFO     | -- intersect: 13975458634.846523
[2025-06-04 01:43:46] 2025-06-03 23:43:26,580 | INFO     | intersect: 13975458634.846523
[2025-06-04 01:43:46] 2025-06-03 23:43:26,580 | INFO     | chi2: 0.8829463369957515
[2025-06-04 01:43:46] 2025-06-03 23:43:26,580 | INFO     | current chi2=0.8829463369957515 (change=1.624479014934907 %)
[2025-06-04 01:43:46] 2025-06-03 23:43:26,580 | INFO     | left removable region: 30
[2025-06-04 01:43:46] 2025-06-03 23:43:26,580 | INFO     | sum of square deviations: 1931608310.0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,582 | INFO     | sum of deviations: 5259997853.0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,582 | INFO     | mean x: 1748988138.5
[2025-06-04 01:43:46] 2025-06-03 23:43:26,582 | INFO     | mean y: 2484806.467391304
[2025-06-04 01:43:46] 2025-06-03 23:43:26,582 | INFO     | -- intersect: -4760216723.5506
[2025-06-04 01:43:46] 2025-06-03 23:43:26,582 | INFO     | intersect: -4760216723.5506
[2025-06-04 01:43:46] 2025-06-03 23:43:26,582 | INFO     | chi2: 0.0007359955993003645
[2025-06-04 01:43:46] 2025-06-03 23:43:26,583 | INFO     | -- intersect: -4760216723.5506
[2025-06-04 01:43:46] 2025-06-03 23:43:26,583 | INFO     | current memory leak: 2.72 B/s (using 184 data points, chi2=0.00)
[2025-06-04 01:43:46] 2025-06-03 23:43:26,584 | INFO     | ..............................
[2025-06-04 01:43:46] 2025-06-03 23:43:26,584 | INFO     | . Timing measurements:
[2025-06-04 01:43:46] 2025-06-03 23:43:26,584 | INFO     | . get job = 0 s
[2025-06-04 01:43:46] 2025-06-03 23:43:26,584 | INFO     | . initial setup = 5 s
[2025-06-04 01:43:46] 2025-06-03 23:43:26,584 | INFO     | . payload setup = 154 s
[2025-06-04 01:43:46] 2025-06-03 23:43:26,584 | INFO     | . stage-in = 0 s
[2025-06-04 01:43:46] 2025-06-03 23:43:26,584 | INFO     | . payload execution = 13536 s
[2025-06-04 01:43:46] 2025-06-03 23:43:26,584 | INFO     | . stage-out = 3 s
[2025-06-04 01:43:46] 2025-06-03 23:43:26,584 | INFO     | . log creation = 1 s
[2025-06-04 01:43:46] 2025-06-03 23:43:26,584 | INFO     | ..............................
[2025-06-04 01:43:46] 2025-06-03 23:43:26,811 | INFO     | 
[2025-06-04 01:43:46] 2025-06-03 23:43:26,811 | INFO     | job summary report
[2025-06-04 01:43:46] 2025-06-03 23:43:26,811 | INFO     | --------------------------------------------------
[2025-06-04 01:43:46] 2025-06-03 23:43:26,811 | INFO     | PanDA job id: 6677549044
[2025-06-04 01:43:46] 2025-06-03 23:43:26,811 | INFO     | task id: 45006595
[2025-06-04 01:43:46] 2025-06-03 23:43:26,811 | INFO     | errors: (none)
[2025-06-04 01:43:46] 2025-06-03 23:43:26,811 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 01:43:46] 2025-06-03 23:43:26,811 | INFO     | pilot state: finished 
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | transexitcode: 0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | exeerrorcode: 0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | exeerrordiag: 
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | exitcode: 0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | exitmsg: OK
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | cpuconsumptiontime: 49947 s
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | nevents: 400
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | neventsw: 0
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | pid: 27550
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | pgrp: 27550
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | corecount: 8
[2025-06-04 01:43:46] 2025-06-03 23:43:26,812 | INFO     | event service: False
[2025-06-04 01:43:46] 2025-06-03 23:43:26,813 | INFO     | sizes: {0: 2405012, 1: 2405211, 12: 2405211, 23: 2405239, 33: 2405267, 44: 2405323, 55: 2405479, 66: 2405507, 77: 2405535, 84: 2405797, 87: 2405825, 13695: 2435640
[2025-06-04 01:43:46] 2025-06-03 23:43:26,813 | INFO     | --------------------------------------------------
[2025-06-04 01:43:46] 2025-06-03 23:43:26,813 | INFO     | 
[2025-06-04 01:43:46] 2025-06-03 23:43:26,813 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 01:43:46] 2025-06-03 23:43:27,127 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,128 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,128 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,128 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,128 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,128 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,128 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,128 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,128 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,128 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,128 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,128 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,129 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,129 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,129 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,129 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,129 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,129 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 01:43:46] 2025-06-03 23:43:27,129 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,129 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 01:43:46] 2025-06-03 23:43:27,129 | INFO     | job 6677549044 has completed (purged errors)
[2025-06-04 01:43:46] 2025-06-03 23:43:27,129 | INFO     | overall cleanup function is called
[2025-06-04 01:43:46] 2025-06-03 23:43:28,139 | INFO     | --- collectZombieJob: --- 10, [27550]
[2025-06-04 01:43:46] 2025-06-03 23:43:28,139 | INFO     | zombie collector waiting for pid 27550
[2025-06-04 01:43:46] 2025-06-03 23:43:28,139 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 01:43:46] 2025-06-03 23:43:28,139 | INFO     | collected zombie processes
[2025-06-04 01:43:46] 2025-06-03 23:43:28,139 | INFO     | will attempt to kill all subprocesses of pid=27550
[2025-06-04 01:43:46] 2025-06-03 23:43:28,261 | INFO     | process IDs to be killed: [27550] (in reverse order)
[2025-06-04 01:43:46] 2025-06-03 23:43:28,603 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 01:43:46] 2025-06-03 23:43:28,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 01:43:46] 2025-06-03 23:43:28,607 | INFO     | did not find any defunct processes belonging to 27550
[2025-06-04 01:43:46] 2025-06-03 23:43:28,610 | INFO     | did not find any defunct processes belonging to 27550
[2025-06-04 01:43:46] 2025-06-03 23:43:28,610 | INFO     | ready for new job
[2025-06-04 01:43:46] 2025-06-03 23:43:28,610 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 01:43:46] 2025-06-03 23:43:28,612 | INFO     | **************************************
[2025-06-04 01:43:46] 2025-06-03 23:43:28,612 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 01:43:46] 2025-06-03 23:43:28,612 | INFO     | **************************************
[2025-06-04 01:43:46] 2025-06-03 23:43:28,612 | INFO     | 
[2025-06-04 01:43:46] 2025-06-03 23:43:28,613 | INFO     | pilot is running in a VM
[2025-06-04 01:43:46] 2025-06-03 23:43:28,613 | INFO     | architecture information:
[2025-06-04 01:43:46] 2025-06-03 23:43:28,617 | INFO     | executing command: cat /etc/os-release
[2025-06-04 01:43:46] 2025-06-03 23:43:28,821 | INFO     | cat /etc/os-release:
[2025-06-04 01:43:46] NAME="CentOS Linux"
[2025-06-04 01:43:46] VERSION="7 (Core)"
[2025-06-04 01:43:46] ID="centos"
[2025-06-04 01:43:46] ID_LIKE="rhel fedora"
[2025-06-04 01:43:46] VERSION_ID="7"
[2025-06-04 01:43:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 01:43:46] ANSI_COLOR="0;31"
[2025-06-04 01:43:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 01:43:46] HOME_URL="https://www.centos.org/"
[2025-06-04 01:43:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 01:43:46] 
[2025-06-04 01:43:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 01:43:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 01:43:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 01:43:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 01:43:46] 
[2025-06-04 01:43:46] 2025-06-03 23:43:28,821 | INFO     | **************************************
[2025-06-04 01:43:46] 2025-06-03 23:43:29,325 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 01:43:46] 2025-06-03 23:43:29,537 | INFO     | sufficient remaining disk space (497003003904 B)
[2025-06-04 01:43:46] 2025-06-03 23:43:29,537 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 01:43:46] 2025-06-03 23:43:29,537 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 01:43:46] 2025-06-03 23:43:29,537 | INFO     | update_server=False
[2025-06-04 01:43:46] 2025-06-03 23:43:29,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 01:43:46] 2025-06-03 23:43:29,539 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 01:43:46] 2025-06-03 23:43:29,539 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 01:43:46] 2025-06-03 23:43:29,539 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 01:43:46] 2025-06-03 23:43:29,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 01:43:46] 2025-06-03 23:43:29,613 | INFO     | all data control threads have been joined
[2025-06-04 01:43:46] 2025-06-03 23:43:30,147 | INFO     | all job control threads have been joined
[2025-06-04 01:43:46] 2025-06-03 23:43:30,347 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 01:43:46] 2025-06-03 23:43:30,492 | INFO     | all payload control threads have been joined
[2025-06-04 01:43:46] 2025-06-03 23:43:30,496 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 01:43:46] 2025-06-03 23:43:30,496 | INFO     | aborting loop
[2025-06-04 01:43:46] 2025-06-03 23:43:30,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 01:43:46] 2025-06-03 23:43:30,544 | INFO     | [job] retrieve thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:30,620 | INFO     | [data] control thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:30,706 | INFO     | [job] validate thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:30,878 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:31,050 | INFO     | [payload] failed_post thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:31,153 | INFO     | [job] control thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:31,203 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:31,498 | INFO     | [payload] control thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:31,502 | INFO     | [job] job monitor thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:31,560 | INFO     | [payload] validate_post thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:31,735 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:31,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 01:43:46] 2025-06-03 23:43:31,796 | INFO     | [data] copytool_in thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:31,991 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:32,355 | INFO     | [data] copytool_out thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:32,742 | INFO     | [job] queue monitor thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:34,545 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 01:43:46] 2025-06-03 23:43:34,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140584445192000)>', '<ExcThread(monitor, started 140583876163328)>']
[2025-06-04 01:43:46] 2025-06-03 23:43:35,575 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 01:43:46] 2025-06-03 23:43:35,575 | INFO     | [monitor] control thread has ended
[2025-06-04 01:43:46] 2025-06-03 23:43:39,850 | INFO     | all workflow threads have been joined
[2025-06-04 01:43:46] 2025-06-03 23:43:39,850 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 01:43:46] 2025-06-03 23:43:39,850 | INFO     | traces error code: 0
[2025-06-04 01:43:46] 2025-06-03 23:43:39,851 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 01:43:46] 2025-06-03 23:43:40,112 [wrapper] ==== pilot stdout END ====
[2025-06-04 01:43:46] 2025-06-03 23:43:40,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 01:43:46] 2025-06-03 23:43:40,224 [wrapper] pilotpid: 18861
[2025-06-04 01:43:46] 2025-06-03 23:43:40,268 [wrapper] Pilot exit status: 0
[2025-06-04 01:43:46] 2025-06-03 23:43:40,304 [wrapper] pandaids: 6677549044
[2025-06-04 01:43:46] 2025-06-03 23:43:40,347 [wrapper] cleanup supervisor_pilot  4247 18862
[2025-06-04 01:43:46] 2025-06-03 23:43:40,355 [wrapper] Test setup, not cleaning
[2025-06-04 01:43:46] 2025-06-03 23:43:40,386 [wrapper] apfmon messages muted
[2025-06-04 01:43:46] 2025-06-03 23:43:40,394 [wrapper] ==== wrapper stdout END ====
[2025-06-04 01:43:46] 2025-06-03 23:43:40,397 [wrapper] ==== wrapper stderr END ====
[2025-06-04 01:43:46]  *** Error codes and diagnostics ***
[2025-06-04 01:43:46]     "exeErrorCode": 0,
[2025-06-04 01:43:46]     "exeErrorDiag": "",
[2025-06-04 01:43:46]     "pilotErrorCode": 0,
[2025-06-04 01:43:46]     "pilotErrorDiag": "",
[2025-06-04 01:43:46]  *** Listing of results directory ***
[2025-06-04 01:43:46] total 392224
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc    495897 Jun  3 10:43 pilot3.tar.gz
[2025-06-04 01:43:46] -rwx------. 1 boinc boinc     37140 Jun  3 11:00 runpilot2-wrapper.sh
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc      5111 Jun  3 11:00 queuedata.json
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc       100 Jun  3 21:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 01:43:46] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 21:47 run_atlas
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc       105 Jun  3 21:47 job.xml
[2025-06-04 01:43:46] -rw-r--r--. 2 boinc boinc 216798603 Jun  3 21:47 EVNT.45006593._001062.pool.root.1
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc      6390 Jun  3 21:47 init_data.xml
[2025-06-04 01:43:46] -rw-r--r--. 2 boinc boinc     15093 Jun  3 21:47 start_atlas.sh
[2025-06-04 01:43:46] drwxrwx--x. 2 boinc boinc        68 Jun  3 21:47 shared
[2025-06-04 01:43:46] -rw-r--r--. 2 boinc boinc    508870 Jun  3 21:47 input.tar.gz
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc         0 Jun  3 21:47 boinc_lockfile
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc      2524 Jun  3 21:47 pandaJob.out
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc    986893 Jun  3 21:50 agis_schedconf.cvmfs.json
[2025-06-04 01:43:46] drwx------. 4 boinc boinc      4096 Jun  3 21:50 pilot3
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc 177836743 Jun  4 01:41 HITS.45006595._026566.pool.root.1
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc       531 Jun  4 01:41 boinc_task_state.xml
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc      1014 Jun  4 01:41 memory_monitor_summary.json
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc   1603667 Jun  4 01:42 agis_ddmendpoints.agis.ALL.json
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc    396506 Jun  4 01:42 log.45006595._026566.job.log.tgz.1
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc        95 Jun  4 01:42 pilot_heartbeat.json
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc      7691 Jun  4 01:43 heartbeat.json
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc      4539 Jun  4 01:43 pilotlog.txt
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc   1192788 Jun  4 01:43 log.45006595._026566.job.log.1
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc       357 Jun  4 01:43 output.list
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc       620 Jun  4 01:43 runtime_log
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc   1607680 Jun  4 01:43 result.tar.gz
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc      8659 Jun  4 01:43 runtime_log.err
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc       657 Jun  4 01:43 buRMDmQgcg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmS4XKDm18Ew1m.diag
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc      8192 Jun  4 01:43 boinc_mmap_file
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc        28 Jun  4 01:43 wrapper_checkpoint.txt
[2025-06-04 01:43:46] -rw-r--r--. 1 boinc boinc     20504 Jun  4 01:43 stderr.txt
[2025-06-04 01:43:46] HITS file was successfully produced:
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc 177836743 Jun  4 01:41 shared/HITS.pool.root.1
[2025-06-04 01:43:46]  *** Contents of shared directory: ***
[2025-06-04 01:43:46] total 387480
[2025-06-04 01:43:46] -rw-r--r--. 2 boinc boinc 216798603 Jun  3 21:47 ATLAS.root_0
[2025-06-04 01:43:46] -rw-r--r--. 2 boinc boinc     15093 Jun  3 21:47 start_atlas.sh
[2025-06-04 01:43:46] -rw-r--r--. 2 boinc boinc    508870 Jun  3 21:47 input.tar.gz
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc 177836743 Jun  4 01:41 HITS.pool.root.1
[2025-06-04 01:43:46] -rw-------. 1 boinc boinc   1607680 Jun  4 01:43 result.tar.gz
01:43:48 (11192): run_atlas exited; CPU time 50145.275573
01:43:48 (11192): called boinc_finish(0)

</stderr_txt>
]]>

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