Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:47:30 (8493): wrapper (7.7.26015): starting
20:47:30 (8493): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 20:47:30] Arguments: --nthreads 8
[2025-06-03 20:47:30] Threads: 8
[2025-06-03 20:47:30] Checking for CVMFS
[2025-06-03 20:47:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:47:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:47:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:47:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:47:32] 2.11.2.0 31392 32160 95668 146750 2 262 12926389 25165825 3677 130560 0 17005905 99.764 19725584 2036 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 20:47:32] CVMFS is ok
[2025-06-03 20:47:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:47:32] Checking for apptainer binary...
[2025-06-03 20:47:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:47:32] Running /usr/bin/apptainer --version
[2025-06-03 20:47:32] apptainer version 1.3.2-1.el7
[2025-06-03 20:47:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:47:34] cg-vwn267.simple-grid.lan
[2025-06-03 20:47:34] apptainer works
[2025-06-03 20:47:34] Set ATHENA_PROC_NUMBER=8
[2025-06-03 20:47:34] Set ATHENA_CORE_NUMBER=8
[2025-06-03 20:47:34] Starting ATLAS job with PandaID=6677497640
[2025-06-03 20:47:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 01:02:35]  *** The last 200 lines of the pilot log: ***
[2025-06-04 01:02:35] 2025-06-03 22:29:29,969 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 01:02:35] 2025-06-03 22:29:29,969 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 01:02:35] 2025-06-03 22:29:29,969 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 01:02:35] 2025-06-03 22:29:29,969 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 01:02:35] 2025-06-03 22:29:29,974 | INFO     | fitting pss+swap vs Time
[2025-06-04 01:02:35] 2025-06-03 22:29:29,974 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 01:02:35] 2025-06-03 22:29:29,976 | INFO     | sum of deviations: 58416496158.0
[2025-06-04 01:02:35] 2025-06-03 22:29:29,976 | INFO     | mean x: 1748983192.0
[2025-06-04 01:02:35] 2025-06-03 22:29:29,976 | INFO     | mean y: 2431881.6619718308
[2025-06-04 01:02:35] 2025-06-03 22:29:29,976 | INFO     | -- intersect: -34094356834.83713
[2025-06-04 01:02:35] 2025-06-03 22:29:29,977 | INFO     | intersect: -34094356834.83713
[2025-06-04 01:02:35] 2025-06-03 22:29:29,982 | INFO     | chi2: 5.854362092547039
[2025-06-04 01:02:35] 2025-06-03 22:29:29,983 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 01:02:35] 2025-06-03 22:29:29,984 | INFO     | sum of deviations: 70488679869.0
[2025-06-04 01:02:35] 2025-06-03 22:29:29,985 | INFO     | mean x: 1748983039.5
[2025-06-04 01:02:35] 2025-06-03 22:29:29,985 | INFO     | mean y: 2440617.625
[2025-06-04 01:02:35] 2025-06-03 22:29:29,985 | INFO     | -- intersect: -44179682807.691765
[2025-06-04 01:02:35] 2025-06-03 22:29:29,985 | INFO     | intersect: -44179682807.691765
[2025-06-04 01:02:35] 2025-06-03 22:29:29,985 | INFO     | chi2: 5.140662996378815
[2025-06-04 01:02:35] 2025-06-03 22:29:29,985 | INFO     | current chi2=5.140662996378815 (change=12.190894326075375 %)
[2025-06-04 01:02:35] 2025-06-03 22:29:29,985 | INFO     | right removable region: 207
[2025-06-04 01:02:35] 2025-06-03 22:29:29,986 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 01:02:35] 2025-06-03 22:29:29,987 | INFO     | sum of deviations: -11517013896.5
[2025-06-04 01:02:35] 2025-06-03 22:29:29,987 | INFO     | mean x: 1748983344.5
[2025-06-04 01:02:35] 2025-06-03 22:29:29,988 | INFO     | mean y: 2483537.1875
[2025-06-04 01:02:35] 2025-06-03 22:29:29,988 | INFO     | -- intersect: 7221319514.086152
[2025-06-04 01:02:35] 2025-06-03 22:29:29,988 | INFO     | intersect: 7221319514.086152
[2025-06-04 01:02:35] 2025-06-03 22:29:29,988 | INFO     | chi2: 1.481670185884834
[2025-06-04 01:02:35] 2025-06-03 22:29:29,988 | INFO     | current chi2=1.481670185884834 (change=74.6911762125016 %)
[2025-06-04 01:02:35] 2025-06-03 22:29:29,989 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 01:02:35] 2025-06-03 22:29:29,997 | INFO     | sum of deviations: -31595446905.999992
[2025-06-04 01:02:35] 2025-06-03 22:29:29,998 | INFO     | mean x: 1748983497.0
[2025-06-04 01:02:35] 2025-06-03 22:29:29,998 | INFO     | mean y: 2498971.891625616
[2025-06-04 01:02:35] 2025-06-03 22:29:29,998 | INFO     | -- intersect: 21306158640.26568
[2025-06-04 01:02:35] 2025-06-03 22:29:29,998 | INFO     | intersect: 21306158640.26568
[2025-06-04 01:02:35] 2025-06-03 22:29:29,998 | INFO     | chi2: 0.9432725595102138
[2025-06-04 01:02:35] 2025-06-03 22:29:29,998 | INFO     | current chi2=0.9432725595102138 (change=36.33721131083543 %)
[2025-06-04 01:02:35] 2025-06-03 22:29:29,999 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 01:02:35] 2025-06-03 22:29:30,000 | INFO     | sum of deviations: -28767704340.5
[2025-06-04 01:02:35] 2025-06-03 22:29:30,000 | INFO     | mean x: 1748983649.5
[2025-06-04 01:02:35] 2025-06-03 22:29:30,001 | INFO     | mean y: 2496621.8434343436
[2025-06-04 01:02:35] 2025-06-03 22:29:30,001 | INFO     | -- intersect: 20906431284.03967
[2025-06-04 01:02:35] 2025-06-03 22:29:30,001 | INFO     | intersect: 20906431284.03967
[2025-06-04 01:02:35] 2025-06-03 22:29:30,001 | INFO     | chi2: 0.9278239027030517
[2025-06-04 01:02:35] 2025-06-03 22:29:30,001 | INFO     | current chi2=0.9278239027030517 (change=1.6377723120858834 %)
[2025-06-04 01:02:35] 2025-06-03 22:29:30,001 | INFO     | left removable region: 30
[2025-06-04 01:02:35] 2025-06-03 22:29:30,002 | INFO     | sum of square deviations: 1719429448.0
[2025-06-04 01:02:35] 2025-06-03 22:29:30,003 | INFO     | sum of deviations: 6009075169.0
[2025-06-04 01:02:35] 2025-06-03 22:29:30,003 | INFO     | mean x: 1748983924.0
[2025-06-04 01:02:35] 2025-06-03 22:29:30,003 | INFO     | mean y: 2486882.118644068
[2025-06-04 01:02:35] 2025-06-03 22:29:30,003 | INFO     | -- intersect: -6109875495.362623
[2025-06-04 01:02:35] 2025-06-03 22:29:30,003 | INFO     | intersect: -6109875495.362623
[2025-06-04 01:02:35] 2025-06-03 22:29:30,004 | INFO     | chi2: 0.00021559789100971852
[2025-06-04 01:02:35] 2025-06-03 22:29:30,004 | INFO     | -- intersect: -6109875495.362623
[2025-06-04 01:02:35] 2025-06-03 22:29:30,004 | INFO     | current memory leak: 3.49 B/s (using 177 data points, chi2=0.00)
[2025-06-04 01:02:35] 2025-06-03 22:29:30,005 | INFO     | ..............................
[2025-06-04 01:02:35] 2025-06-03 22:29:30,005 | INFO     | . Timing measurements:
[2025-06-04 01:02:35] 2025-06-03 22:29:30,005 | INFO     | . get job = 0 s
[2025-06-04 01:02:35] 2025-06-03 22:29:30,005 | INFO     | . initial setup = 4 s
[2025-06-04 01:02:35] 2025-06-03 22:29:30,005 | INFO     | . payload setup = 69 s
[2025-06-04 01:02:35] 2025-06-03 22:29:30,005 | INFO     | . stage-in = 0 s
[2025-06-04 01:02:35] 2025-06-03 22:29:30,006 | INFO     | . payload execution = 13078 s
[2025-06-04 01:02:35] 2025-06-03 22:29:30,006 | INFO     | . stage-out = 4 s
[2025-06-04 01:02:35] 2025-06-03 22:29:30,006 | INFO     | . log creation = 1 s
[2025-06-04 01:02:35] 2025-06-03 22:29:30,006 | INFO     | ..............................
[2025-06-04 01:02:35] 2025-06-03 22:29:30,354 | INFO     | 
[2025-06-04 01:02:35] 2025-06-03 22:29:30,354 | INFO     | job summary report
[2025-06-04 01:02:35] 2025-06-03 22:29:30,354 | INFO     | --------------------------------------------------
[2025-06-04 01:02:35] 2025-06-03 22:29:30,354 | INFO     | PanDA job id: 6677497640
[2025-06-04 01:02:35] 2025-06-03 22:29:30,355 | INFO     | task id: 45006595
[2025-06-04 01:02:35] 2025-06-03 22:29:30,355 | INFO     | errors: (none)
[2025-06-04 01:02:35] 2025-06-03 22:29:30,355 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 01:02:35] 2025-06-03 22:29:30,355 | INFO     | pilot state: finished 
[2025-06-04 01:02:35] 2025-06-03 22:29:30,355 | INFO     | transexitcode: 0
[2025-06-04 01:02:35] 2025-06-03 22:29:30,355 | INFO     | exeerrorcode: 0
[2025-06-04 01:02:35] 2025-06-03 22:29:30,355 | INFO     | exeerrordiag: 
[2025-06-04 01:02:35] 2025-06-03 22:29:30,355 | INFO     | exitcode: 0
[2025-06-04 01:02:35] 2025-06-03 22:29:30,355 | INFO     | exitmsg: OK
[2025-06-04 01:02:35] 2025-06-03 22:29:30,355 | INFO     | cpuconsumptiontime: 47956 s
[2025-06-04 01:02:35] 2025-06-03 22:29:30,356 | INFO     | nevents: 400
[2025-06-04 01:02:35] 2025-06-03 22:29:30,356 | INFO     | neventsw: 0
[2025-06-04 01:02:35] 2025-06-03 22:29:30,371 | INFO     | pid: 30173
[2025-06-04 01:02:35] 2025-06-03 22:29:30,371 | INFO     | pgrp: 30173
[2025-06-04 01:02:35] 2025-06-03 22:29:30,371 | INFO     | corecount: 8
[2025-06-04 01:02:35] 2025-06-03 22:29:30,371 | INFO     | event service: False
[2025-06-04 01:02:35] 2025-06-03 22:29:30,371 | INFO     | sizes: {0: 2405011, 1: 2405210, 12: 2405210, 13: 2405444, 23: 2405500, 13151: 2434938, 13156: 2443879, 13158: 2443935, 13253: 2444105}
[2025-06-04 01:02:35] 2025-06-03 22:29:30,372 | INFO     | --------------------------------------------------
[2025-06-04 01:02:35] 2025-06-03 22:29:30,372 | INFO     | 
[2025-06-04 01:02:35] 2025-06-03 22:29:30,372 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 01:02:35] 2025-06-03 22:29:30,420 | INFO     | PID=14704 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 01:02:35] 2025-06-03 22:29:30,420 | INFO     | .. there are 9 such processes running
[2025-06-04 01:02:35] 2025-06-03 22:29:30,696 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,696 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,696 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,696 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,696 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,696 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,697 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,697 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,697 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,697 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,698 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,698 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,698 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 01:02:35] 2025-06-03 22:29:30,698 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,698 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 01:02:35] 2025-06-03 22:29:30,698 | INFO     | job 6677497640 has completed (purged errors)
[2025-06-04 01:02:35] 2025-06-03 22:29:30,699 | INFO     | overall cleanup function is called
[2025-06-04 01:02:35] 2025-06-03 22:29:31,712 | INFO     | --- collectZombieJob: --- 10, [30173]
[2025-06-04 01:02:35] 2025-06-03 22:29:31,712 | INFO     | zombie collector waiting for pid 30173
[2025-06-04 01:02:35] 2025-06-03 22:29:31,712 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 01:02:35] 2025-06-03 22:29:31,712 | INFO     | collected zombie processes
[2025-06-04 01:02:35] 2025-06-03 22:29:31,713 | INFO     | will attempt to kill all subprocesses of pid=30173
[2025-06-04 01:02:35] 2025-06-03 22:29:31,850 | INFO     | process IDs to be killed: [30173] (in reverse order)
[2025-06-04 01:02:35] 2025-06-03 22:29:32,807 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 01:02:35] 2025-06-03 22:29:32,815 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 01:02:35] 2025-06-03 22:29:32,819 | INFO     | did not find any defunct processes belonging to 30173
[2025-06-04 01:02:35] 2025-06-03 22:29:32,822 | INFO     | did not find any defunct processes belonging to 30173
[2025-06-04 01:02:35] 2025-06-03 22:29:32,823 | INFO     | ready for new job
[2025-06-04 01:02:35] 2025-06-03 22:29:32,823 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 01:02:35] 2025-06-03 22:29:32,825 | INFO     | **************************************
[2025-06-04 01:02:35] 2025-06-03 22:29:32,825 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 01:02:35] 2025-06-03 22:29:32,825 | INFO     | **************************************
[2025-06-04 01:02:35] 2025-06-03 22:29:32,825 | INFO     | 
[2025-06-04 01:02:35] 2025-06-03 22:29:32,826 | INFO     | pilot is running in a VM
[2025-06-04 01:02:35] 2025-06-03 22:29:32,826 | INFO     | architecture information:
[2025-06-04 01:02:35] 2025-06-03 22:29:32,846 | INFO     | executing command: cat /etc/os-release
[2025-06-04 01:02:35] 2025-06-03 22:29:33,077 | INFO     | cat /etc/os-release:
[2025-06-04 01:02:35] NAME="CentOS Linux"
[2025-06-04 01:02:35] VERSION="7 (Core)"
[2025-06-04 01:02:35] ID="centos"
[2025-06-04 01:02:35] ID_LIKE="rhel fedora"
[2025-06-04 01:02:35] VERSION_ID="7"
[2025-06-04 01:02:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 01:02:35] ANSI_COLOR="0;31"
[2025-06-04 01:02:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 01:02:35] HOME_URL="https://www.centos.org/"
[2025-06-04 01:02:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 01:02:35] 
[2025-06-04 01:02:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 01:02:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 01:02:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 01:02:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 01:02:35] 
[2025-06-04 01:02:35] 2025-06-03 22:29:33,078 | INFO     | **************************************
[2025-06-04 01:02:35] 2025-06-03 22:29:33,581 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 01:02:35] 2025-06-03 22:29:33,821 | INFO     | sufficient remaining disk space (497104715776 B)
[2025-06-04 01:02:35] 2025-06-03 22:29:33,821 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 01:02:35] 2025-06-03 22:29:33,821 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 01:02:35] 2025-06-03 22:29:33,821 | INFO     | update_server=False
[2025-06-04 01:02:35] 2025-06-03 22:29:33,821 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 01:02:35] 2025-06-03 22:29:33,822 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 01:02:35] 2025-06-03 22:29:33,944 | INFO     | all payload control threads have been joined
[2025-06-04 01:02:35] 2025-06-03 22:29:34,222 | INFO     | all job control threads have been joined
[2025-06-04 01:02:35] 2025-06-03 22:29:34,348 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 01:02:35] 2025-06-03 22:29:34,348 | INFO     | aborting loop
[2025-06-04 01:02:35] 2025-06-03 22:29:34,435 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 01:02:35] 2025-06-03 22:29:34,435 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 01:02:35] 2025-06-03 22:29:34,435 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 01:02:35] 2025-06-03 22:29:34,579 | INFO     | all data control threads have been joined
[2025-06-04 01:02:35] 2025-06-03 22:29:34,827 | INFO     | [job] retrieve thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:34,950 | INFO     | [payload] control thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:35,151 | INFO     | [payload] failed_post thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:35,196 | INFO     | [data] copytool_in thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:35,227 | INFO     | [job] control thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:35,282 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 01:02:35] 2025-06-03 22:29:35,353 | INFO     | [job] job monitor thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:35,364 | INFO     | [payload] validate_post thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:35,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:35,534 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 01:02:35] 2025-06-03 22:29:35,575 | INFO     | [job] validate thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:35,585 | INFO     | [data] control thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:35,720 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:35,830 | INFO     | [data] copytool_out thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:35,930 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:36,029 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:36,287 | INFO     | [job] queue monitor thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:39,543 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 01:02:35] 2025-06-03 22:29:41,500 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140570602575680)>', '<ExcThread(monitor, started 140569649084160)>']
[2025-06-04 01:02:35] 2025-06-03 22:29:42,482 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 01:02:35] 2025-06-03 22:29:42,482 | INFO     | [monitor] control thread has ended
[2025-06-04 01:02:35] 2025-06-03 22:29:46,526 | INFO     | all workflow threads have been joined
[2025-06-04 01:02:35] 2025-06-03 22:29:46,526 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 01:02:35] 2025-06-03 22:29:46,527 | INFO     | traces error code: 0
[2025-06-04 01:02:35] 2025-06-03 22:29:46,527 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 01:02:35] 2025-06-03 22:29:46,853 [wrapper] ==== pilot stdout END ====
[2025-06-04 01:02:35] 2025-06-03 22:29:46,945 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 01:02:35] 2025-06-03 22:29:46,999 [wrapper] pilotpid: 14704
[2025-06-04 01:02:35] 2025-06-03 22:29:47,062 [wrapper] Pilot exit status: 0
[2025-06-04 01:02:35] 2025-06-03 22:29:47,510 [wrapper] pandaids: 6677497640
[2025-06-04 01:02:35] 2025-06-03 22:29:48,090 [wrapper] cleanup supervisor_pilot 21045 14705
[2025-06-04 01:02:35] 2025-06-03 22:29:48,150 [wrapper] Test setup, not cleaning
[2025-06-04 01:02:35] 2025-06-03 22:29:48,231 [wrapper] apfmon messages muted
[2025-06-04 01:02:35] 2025-06-03 22:29:48,337 [wrapper] ==== wrapper stdout END ====
[2025-06-04 01:02:35] 2025-06-03 22:29:48,422 [wrapper] ==== wrapper stderr END ====
[2025-06-04 01:02:35]  *** Error codes and diagnostics ***
[2025-06-04 01:02:35]     "exeErrorCode": 0,
[2025-06-04 01:02:35]     "exeErrorDiag": "",
[2025-06-04 01:02:35]     "pilotErrorCode": 0,
[2025-06-04 01:02:35]     "pilotErrorDiag": "",
[2025-06-04 01:02:35]  *** Listing of results directory ***
[2025-06-04 01:02:35] total 385256
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc    495897 Jun  3 09:01 pilot3.tar.gz
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc      5111 Jun  3 09:11 queuedata.json
[2025-06-04 01:02:35] -rwx------. 1 boinc boinc     37140 Jun  3 09:12 runpilot2-wrapper.sh
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc       100 Jun  3 20:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 01:02:35] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 20:47 run_atlas
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc       105 Jun  3 20:47 job.xml
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc      6391 Jun  3 20:47 init_data.xml
[2025-06-04 01:02:35] -rw-r--r--. 2 boinc boinc 213684390 Jun  3 20:47 EVNT.45006593._000945.pool.root.1
[2025-06-04 01:02:35] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:47 start_atlas.sh
[2025-06-04 01:02:35] drwxrwx--x. 2 boinc boinc        68 Jun  3 20:47 shared
[2025-06-04 01:02:35] -rw-r--r--. 2 boinc boinc    508881 Jun  3 20:47 input.tar.gz
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc         0 Jun  3 20:47 boinc_lockfile
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc      2524 Jun  3 20:47 pandaJob.out
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc    985078 Jun  3 20:47 agis_schedconf.cvmfs.json
[2025-06-04 01:02:35] drwx------. 4 boinc boinc      4096 Jun  3 20:48 pilot3
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc 173978253 Jun  4 00:26 HITS.45006595._023613.pool.root.1
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc       531 Jun  4 00:26 boinc_task_state.xml
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc      1018 Jun  4 00:27 memory_monitor_summary.json
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc   1603667 Jun  4 00:27 agis_ddmendpoints.agis.ALL.json
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc    367737 Jun  4 00:27 log.45006595._023613.job.log.tgz.1
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc        95 Jun  4 00:29 pilot_heartbeat.json
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc      7687 Jun  4 00:29 heartbeat.json
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc      4416 Jun  4 00:29 pilotlog.txt
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc   1141306 Jun  4 00:29 log.45006595._023613.job.log.1
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc       357 Jun  4 00:29 output.list
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc       620 Jun  4 00:29 runtime_log
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc   1525760 Jun  4 00:29 result.tar.gz
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc      8659 Jun  4 00:29 runtime_log.err
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc       656 Jun  4 00:29 7nCLDmA0ag7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPeiKDmesJa6n.diag
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc      8192 Jun  4 01:02 boinc_mmap_file
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc        28 Jun  4 01:02 wrapper_checkpoint.txt
[2025-06-04 01:02:35] -rw-r--r--. 1 boinc boinc     20530 Jun  4 01:02 stderr.txt
[2025-06-04 01:02:35] HITS file was successfully produced:
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc 173978253 Jun  4 00:26 shared/HITS.pool.root.1
[2025-06-04 01:02:35]  *** Contents of shared directory: ***
[2025-06-04 01:02:35] total 380592
[2025-06-04 01:02:35] -rw-r--r--. 2 boinc boinc 213684390 Jun  3 20:47 ATLAS.root_0
[2025-06-04 01:02:35] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:47 start_atlas.sh
[2025-06-04 01:02:35] -rw-r--r--. 2 boinc boinc    508881 Jun  3 20:47 input.tar.gz
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc 173978253 Jun  4 00:26 HITS.pool.root.1
[2025-06-04 01:02:35] -rw-------. 1 boinc boinc   1525760 Jun  4 00:29 result.tar.gz
01:02:37 (8493): run_atlas exited; CPU time 48136.604942
01:02:37 (8493): called boinc_finish(0)

</stderr_txt>
]]>

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