Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:18:53 (986374): wrapper (7.7.26015): starting
18:18:53 (986374): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 18:18:53] Arguments: --nthreads 4
[2025-06-04 18:18:53] Threads: 4
[2025-06-04 18:18:53] Checking for CVMFS
[2025-06-04 18:18:53] No cvmfs_config command found, will try listing directly
[2025-06-04 18:18:53] CVMFS is ok
[2025-06-04 18:18:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 18:18:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 18:18:53] Further information can be found at the LHC@home message board.
[2025-06-04 18:18:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:18:53] Checking for apptainer binary...
[2025-06-04 18:18:54] which: no apptainer in ((null))
[2025-06-04 18:18:54] apptainer is not installed, using version from CVMFS
[2025-06-04 18:18:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:18:54] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-06-04 18:18:54] apptainer works
[2025-06-04 18:18:54] Set ATHENA_PROC_NUMBER=4
[2025-06-04 18:18:54] Set ATHENA_CORE_NUMBER=4
[2025-06-04 18:18:54] Starting ATLAS job with PandaID=6677473331
[2025-06-04 18:18:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:03:28]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:03:28] 2025-06-04 19:01:22,348 | INFO     | log transfer has been attempted: DONE
[2025-06-04 21:03:28] 2025-06-04 19:01:22,348 | INFO     | job 6677473331 has finished - writing final server update
[2025-06-04 21:03:28] 2025-06-04 19:01:22,349 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1705160/.job.ad'
[2025-06-04 21:03:28] 2025-06-04 19:01:22,349 | INFO     | total number of processed events: 400 (read)
[2025-06-04 21:03:28] 2025-06-04 19:01:22,353 | INFO     | executing command: lscpu
[2025-06-04 21:03:28] 2025-06-04 19:01:22,417 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 21:03:28] 2025-06-04 19:01:24,365 | INFO     | monitor loop #710: job 0:6677473331 is in state 'finished'
[2025-06-04 21:03:28] 2025-06-04 19:01:24,366 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 21:03:28] 2025-06-04 19:01:26,635 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 21:03:28] 2025-06-04 19:01:26,636 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6677473331/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 21:03:28] 2025-06-04 19:01:26,636 | INFO     | extracted standard info from prmon json
[2025-06-04 21:03:28] 2025-06-04 19:01:26,637 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:03:28] 2025-06-04 19:01:26,637 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:03:28] 2025-06-04 19:01:26,637 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:03:28] 2025-06-04 19:01:26,637 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:03:28] 2025-06-04 19:01:26,641 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:03:28] 2025-06-04 19:01:26,642 | INFO     | sum of square deviations: 1246386160.0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,643 | INFO     | sum of deviations: -35924272499.999985
[2025-06-04 21:03:28] 2025-06-04 19:01:26,643 | INFO     | mean x: 1749058793.0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,644 | INFO     | mean y: 2413093.974842767
[2025-06-04 21:03:28] 2025-06-04 19:01:26,644 | INFO     | -- intersect: 50415091535.66507
[2025-06-04 21:03:28] 2025-06-04 19:01:26,644 | INFO     | intersect: 50415091535.66507
[2025-06-04 21:03:28] 2025-06-04 19:01:26,644 | INFO     | chi2: 1.9133662872185955
[2025-06-04 21:03:28] 2025-06-04 19:01:26,644 | INFO     | sum of square deviations: 1132458442.5
[2025-06-04 21:03:28] 2025-06-04 19:01:26,645 | INFO     | sum of deviations: -33980969636.0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,645 | INFO     | mean x: 1749058640.5
[2025-06-04 21:03:28] 2025-06-04 19:01:26,645 | INFO     | mean y: 2415696.2337662335
[2025-06-04 21:03:28] 2025-06-04 19:01:26,646 | INFO     | -- intersect: 52485320431.533966
[2025-06-04 21:03:28] 2025-06-04 19:01:26,646 | INFO     | intersect: 52485320431.533966
[2025-06-04 21:03:28] 2025-06-04 19:01:26,646 | INFO     | chi2: 1.9053652029362529
[2025-06-04 21:03:28] 2025-06-04 19:01:26,646 | INFO     | current chi2=1.9053652029362529 (change=0.41816793448229544 %)
[2025-06-04 21:03:28] 2025-06-04 19:01:26,646 | INFO     | right removable region: 153
[2025-06-04 21:03:28] 2025-06-04 19:01:26,646 | INFO     | sum of square deviations: 1132458442.5
[2025-06-04 21:03:28] 2025-06-04 19:01:26,647 | INFO     | sum of deviations: -58860155837.5
[2025-06-04 21:03:28] 2025-06-04 19:01:26,647 | INFO     | mean x: 1749058945.5
[2025-06-04 21:03:28] 2025-06-04 19:01:26,647 | INFO     | mean y: 2443321.9935064935
[2025-06-04 21:03:28] 2025-06-04 19:01:26,647 | INFO     | -- intersect: 90910752393.21439
[2025-06-04 21:03:28] 2025-06-04 19:01:26,648 | INFO     | intersect: 90910752393.21439
[2025-06-04 21:03:28] 2025-06-04 19:01:26,648 | INFO     | chi2: 0.32824001765622696
[2025-06-04 21:03:28] 2025-06-04 19:01:26,648 | INFO     | current chi2=0.32824001765622696 (change=82.84489384761869 %)
[2025-06-04 21:03:28] 2025-06-04 19:01:26,648 | INFO     | sum of square deviations: 1025693650.0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,649 | INFO     | sum of deviations: -54500263279.0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,649 | INFO     | mean x: 1749059098.0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,649 | INFO     | mean y: 2437056.22147651
[2025-06-04 21:03:28] 2025-06-04 19:01:26,649 | INFO     | -- intersect: 92938745408.6523
[2025-06-04 21:03:28] 2025-06-04 19:01:26,649 | INFO     | intersect: 92938745408.6523
[2025-06-04 21:03:28] 2025-06-04 19:01:26,650 | INFO     | chi2: 0.3235198691360257
[2025-06-04 21:03:28] 2025-06-04 19:01:26,650 | INFO     | current chi2=0.3235198691360257 (change=1.4380173855415663 %)
[2025-06-04 21:03:28] 2025-06-04 19:01:26,650 | INFO     | left removable region: 20
[2025-06-04 21:03:28] 2025-06-04 19:01:26,650 | INFO     | sum of square deviations: 729472282.0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,651 | INFO     | sum of deviations: -39932013370.000015
[2025-06-04 21:03:28] 2025-06-04 19:01:26,651 | INFO     | mean x: 1749059220.0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,651 | INFO     | mean y: 2421175.120300752
[2025-06-04 21:03:28] 2025-06-04 19:01:26,651 | INFO     | -- intersect: 95747602837.77571
[2025-06-04 21:03:28] 2025-06-04 19:01:26,651 | INFO     | intersect: 95747602837.77571
[2025-06-04 21:03:28] 2025-06-04 19:01:26,651 | INFO     | chi2: 0.3005210354786168
[2025-06-04 21:03:28] 2025-06-04 19:01:26,651 | INFO     | -- intersect: 95747602837.77571
[2025-06-04 21:03:28] 2025-06-04 19:01:26,652 | INFO     | current memory leak: -54.74 B/s (using 133 data points, chi2=0.30)
[2025-06-04 21:03:28] 2025-06-04 19:01:26,652 | INFO     | ..............................
[2025-06-04 21:03:28] 2025-06-04 19:01:26,652 | INFO     | . Timing measurements:
[2025-06-04 21:03:28] 2025-06-04 19:01:26,652 | INFO     | . get job = 0 s
[2025-06-04 21:03:28] 2025-06-04 19:01:26,653 | INFO     | . initial setup = 1 s
[2025-06-04 21:03:28] 2025-06-04 19:01:26,653 | INFO     | . payload setup = 7 s
[2025-06-04 21:03:28] 2025-06-04 19:01:26,653 | INFO     | . stage-in = 0 s
[2025-06-04 21:03:28] 2025-06-04 19:01:26,653 | INFO     | . payload execution = 9703 s
[2025-06-04 21:03:28] 2025-06-04 19:01:26,653 | INFO     | . stage-out = 0 s
[2025-06-04 21:03:28] 2025-06-04 19:01:26,653 | INFO     | . log creation = 0 s
[2025-06-04 21:03:28] 2025-06-04 19:01:26,653 | INFO     | ..............................
[2025-06-04 21:03:28] 2025-06-04 19:01:26,754 | INFO     | 
[2025-06-04 21:03:28] 2025-06-04 19:01:26,754 | INFO     | job summary report
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | --------------------------------------------------
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | PanDA job id: 6677473331
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | task id: 45006595
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | errors: (none)
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | pilot state: finished 
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | transexitcode: 0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | exeerrorcode: 0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | exeerrordiag: 
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | exitcode: 0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | exitmsg: OK
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | cpuconsumptiontime: 36884 s
[2025-06-04 21:03:28] 2025-06-04 19:01:26,755 | INFO     | nevents: 400
[2025-06-04 21:03:28] 2025-06-04 19:01:26,756 | INFO     | neventsw: 0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,756 | INFO     | pid: 997014
[2025-06-04 21:03:28] 2025-06-04 19:01:26,756 | INFO     | pgrp: 997014
[2025-06-04 21:03:28] 2025-06-04 19:01:26,756 | INFO     | corecount: 4
[2025-06-04 21:03:28] 2025-06-04 19:01:26,756 | INFO     | event service: False
[2025-06-04 21:03:28] 2025-06-04 19:01:26,756 | INFO     | sizes: {0: 2396512, 1: 2397379, 6: 2397585, 12: 2397613, 9714: 2425817, 9715: 2425816, 9716: 2434963, 9719: 2435019, 9726: 2435189}
[2025-06-04 21:03:28] 2025-06-04 19:01:26,756 | INFO     | --------------------------------------------------
[2025-06-04 21:03:28] 2025-06-04 19:01:26,756 | INFO     | 
[2025-06-04 21:03:28] 2025-06-04 19:01:26,756 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-06-04 21:03:28] 2025-06-04 19:01:26,777 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,778 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,779 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,779 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,779 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:03:28] 2025-06-04 19:01:26,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,779 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:03:28] 2025-06-04 19:01:26,779 | INFO     | job 6677473331 has completed (purged errors)
[2025-06-04 21:03:28] 2025-06-04 19:01:26,779 | INFO     | overall cleanup function is called
[2025-06-04 21:03:28] 2025-06-04 19:01:27,786 | INFO     | --- collectZombieJob: --- 10, [997014]
[2025-06-04 21:03:28] 2025-06-04 19:01:27,787 | INFO     | zombie collector waiting for pid 997014
[2025-06-04 21:03:28] 2025-06-04 19:01:27,787 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:03:28] 2025-06-04 19:01:27,787 | INFO     | collected zombie processes
[2025-06-04 21:03:28] 2025-06-04 19:01:27,787 | INFO     | will attempt to kill all subprocesses of pid=997014
[2025-06-04 21:03:28] 2025-06-04 19:01:28,146 | INFO     | process IDs to be killed: [997014] (in reverse order)
[2025-06-04 21:03:28] 2025-06-04 19:01:28,253 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:03:28] 2025-06-04 19:01:28,254 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:03:28] 2025-06-04 19:01:28,266 | INFO     | did not find any defunct processes belonging to 997014
[2025-06-04 21:03:28] 2025-06-04 19:01:28,278 | INFO     | did not find any defunct processes belonging to 997014
[2025-06-04 21:03:28] 2025-06-04 19:01:28,278 | INFO     | ready for new job
[2025-06-04 21:03:28] 2025-06-04 19:01:28,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:03:28] 2025-06-04 19:01:28,280 | INFO     | **************************************
[2025-06-04 21:03:28] 2025-06-04 19:01:28,280 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:03:28] 2025-06-04 19:01:28,280 | INFO     | **************************************
[2025-06-04 21:03:28] 2025-06-04 19:01:28,281 | INFO     | 
[2025-06-04 21:03:28] 2025-06-04 19:01:28,284 | INFO     | architecture information:
[2025-06-04 21:03:28] 2025-06-04 19:01:28,285 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:03:28] 2025-06-04 19:01:28,301 | INFO     | cat /etc/os-release:
[2025-06-04 21:03:28] NAME="CentOS Linux"
[2025-06-04 21:03:28] VERSION="7 (Core)"
[2025-06-04 21:03:28] ID="centos"
[2025-06-04 21:03:28] ID_LIKE="rhel fedora"
[2025-06-04 21:03:28] VERSION_ID="7"
[2025-06-04 21:03:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:03:28] ANSI_COLOR="0;31"
[2025-06-04 21:03:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:03:28] HOME_URL="https://www.centos.org/"
[2025-06-04 21:03:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:03:28] 
[2025-06-04 21:03:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:03:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:03:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:03:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:03:28] 
[2025-06-04 21:03:28] 2025-06-04 19:01:28,302 | INFO     | **************************************
[2025-06-04 21:03:28] 2025-06-04 19:01:28,805 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-06-04 21:03:28] 2025-06-04 19:01:28,822 | INFO     | sufficient remaining disk space (646464929792 B)
[2025-06-04 21:03:28] 2025-06-04 19:01:28,823 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:03:28] 2025-06-04 19:01:28,823 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:03:28] 2025-06-04 19:01:28,823 | INFO     | update_server=False
[2025-06-04 21:03:28] 2025-06-04 19:01:28,823 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:03:28] 2025-06-04 19:01:28,823 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:03:28] 2025-06-04 19:01:28,823 | INFO     | aborting loop
[2025-06-04 21:03:28] 2025-06-04 19:01:28,957 | INFO     | all data control threads have been joined
[2025-06-04 21:03:28] 2025-06-04 19:01:28,963 | INFO     | all job control threads have been joined
[2025-06-04 21:03:28] 2025-06-04 19:01:29,258 | INFO     | all payload control threads have been joined
[2025-06-04 21:03:28] 2025-06-04 19:01:29,485 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:03:28] 2025-06-04 19:01:29,550 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:03:28] 2025-06-04 19:01:29,551 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:03:28] 2025-06-04 19:01:29,551 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:03:28] 2025-06-04 19:01:29,828 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:29,829 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:29,884 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:29,963 | INFO     | [data] control thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:29,968 | INFO     | [job] control thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:30,046 | INFO     | [job] validate thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:30,264 | INFO     | [payload] control thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:30,398 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:30,443 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:30,481 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:30,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:03:28] 2025-06-04 19:01:30,826 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:30,883 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:31,263 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:31,490 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:31,763 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:03:28] 2025-06-04 19:01:32,768 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:34,544 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:03:28] 2025-06-04 19:01:36,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22723641558848)>', '<ExcThread(monitor, started 22722788710144)>']
[2025-06-04 21:03:28] 2025-06-04 19:01:36,586 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:03:28] 2025-06-04 19:01:36,587 | INFO     | [monitor] control thread has ended
[2025-06-04 21:03:28] 2025-06-04 19:01:41,054 | INFO     | all workflow threads have been joined
[2025-06-04 21:03:28] 2025-06-04 19:01:41,055 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:03:28] 2025-06-04 19:01:41,055 | INFO     | traces error code: 0
[2025-06-04 21:03:28] 2025-06-04 19:01:41,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:03:28] 2025-06-04 19:01:41,221 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:03:28] 2025-06-04 19:01:41,224 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:03:28] 2025-06-04 19:01:41,226 [wrapper] pilotpid: 990081
[2025-06-04 21:03:28] 2025-06-04 19:01:41,228 [wrapper] Pilot exit status: 0
[2025-06-04 21:03:28] 2025-06-04 19:01:41,238 [wrapper] pandaids: 6677473331
[2025-06-04 21:03:28] 2025-06-04 19:01:41,306 [wrapper] cleanup supervisor_pilot 1240192 990082
[2025-06-04 21:03:28] 2025-06-04 19:01:41,309 [wrapper] Test setup, not cleaning
[2025-06-04 21:03:28] 2025-06-04 19:01:41,312 [wrapper] apfmon messages muted
[2025-06-04 21:03:28] 2025-06-04 19:01:41,315 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:03:28] 2025-06-04 19:01:41,318 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:03:28]  *** Error codes and diagnostics ***
[2025-06-04 21:03:28]     "exeErrorCode": 0,
[2025-06-04 21:03:28]     "exeErrorDiag": "",
[2025-06-04 21:03:28]     "pilotErrorCode": 0,
[2025-06-04 21:03:28]     "pilotErrorDiag": "",
[2025-06-04 21:03:28]  *** Listing of results directory ***
[2025-06-04 21:03:28] total 394844
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc    495897 Jun  3 07:38 pilot3.tar.gz
[2025-06-04 21:03:28] -rwx------ 1 boinc boinc     37140 Jun  3 08:14 runpilot2-wrapper.sh
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc      5111 Jun  3 08:14 queuedata.json
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc       100 Jun  4 18:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:03:28] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 18:18 run_atlas
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc       105 Jun  4 18:18 job.xml
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc      6635 Jun  4 18:18 init_data.xml
[2025-06-04 21:03:28] -rw-r--r-- 2 boinc boinc 217724733 Jun  4 18:18 EVNT.45006593._000878.pool.root.1
[2025-06-04 21:03:28] -rw-r--r-- 2 boinc boinc     15093 Jun  4 18:18 start_atlas.sh
[2025-06-04 21:03:28] drwxrwx--x 2 boinc boinc      4096 Jun  4 18:18 shared
[2025-06-04 21:03:28] -rw-r--r-- 2 boinc boinc    508873 Jun  4 18:18 input.tar.gz
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc         0 Jun  4 18:18 boinc_lockfile
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc      2524 Jun  4 18:18 pandaJob.out
[2025-06-04 21:03:28] -rw------- 1 boinc boinc    990984 Jun  4 18:19 agis_schedconf.cvmfs.json
[2025-06-04 21:03:28] -rw------- 1 boinc boinc   1598969 Jun  4 18:19 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:03:28] drwx------ 4 boinc boinc      4096 Jun  4 18:19 pilot3
[2025-06-04 21:03:28] -rw------- 1 boinc boinc 180339560 Jun  4 21:00 HITS.45006595._021941.pool.root.1
[2025-06-04 21:03:28] -rw------- 1 boinc boinc        95 Jun  4 21:00 pilot_heartbeat.json
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc       529 Jun  4 21:00 boinc_task_state.xml
[2025-06-04 21:03:28] -rw------- 1 boinc boinc      1034 Jun  4 21:01 memory_monitor_summary.json
[2025-06-04 21:03:28] -rw------- 1 boinc boinc    293674 Jun  4 21:01 log.45006595._021941.job.log.tgz.1
[2025-06-04 21:03:28] -rw------- 1 boinc boinc      7727 Jun  4 21:01 heartbeat.json
[2025-06-04 21:03:28] -rw------- 1 boinc boinc      4363 Jun  4 21:01 pilotlog.txt
[2025-06-04 21:03:28] -rw------- 1 boinc boinc    916275 Jun  4 21:01 log.45006595._021941.job.log.1
[2025-06-04 21:03:28] -rw------- 1 boinc boinc       357 Jun  4 21:01 output.list
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc       620 Jun  4 21:01 runtime_log
[2025-06-04 21:03:28] -rw------- 1 boinc boinc   1228800 Jun  4 21:01 result.tar.gz
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc      9025 Jun  4 21:01 runtime_log.err
[2025-06-04 21:03:28] -rw------- 1 boinc boinc       662 Jun  4 21:01 31CNDmN6Zg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFOiKDmDAgAun.diag
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc        26 Jun  4 21:03 wrapper_checkpoint.txt
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc      8192 Jun  4 21:03 boinc_mmap_file
[2025-06-04 21:03:28] -rw-r--r-- 1 boinc boinc     20913 Jun  4 21:03 stderr.txt
[2025-06-04 21:03:28] HITS file was successfully produced:
[2025-06-04 21:03:28] -rw------- 1 boinc boinc 180339560 Jun  4 21:00 shared/HITS.pool.root.1
[2025-06-04 21:03:28]  *** Contents of shared directory: ***
[2025-06-04 21:03:28] total 390464
[2025-06-04 21:03:28] -rw-r--r-- 2 boinc boinc 217724733 Jun  4 18:18 ATLAS.root_0
[2025-06-04 21:03:28] -rw-r--r-- 2 boinc boinc     15093 Jun  4 18:18 start_atlas.sh
[2025-06-04 21:03:28] -rw-r--r-- 2 boinc boinc    508873 Jun  4 18:18 input.tar.gz
[2025-06-04 21:03:28] -rw------- 1 boinc boinc 180339560 Jun  4 21:00 HITS.pool.root.1
[2025-06-04 21:03:28] -rw------- 1 boinc boinc   1228800 Jun  4 21:01 result.tar.gz
21:03:30 (986374): run_atlas exited; CPU time 37276.270898
21:03:30 (986374): called boinc_finish(0)

</stderr_txt>
]]>

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