Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:39:33 (9364): wrapper (7.7.26015): starting
17:39:33 (9364): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 17:39:33] Arguments: --nthreads 8
[2025-06-03 17:39:33] Threads: 8
[2025-06-03 17:39:33] Checking for CVMFS
[2025-06-03 17:39:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 17:39:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 17:39:35] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 17:39:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 17:39:38] 2.11.2.0 26884 31975 88992 146746 1 103 16587427 25165824 4268 130560 0 16605168 99.824 18855498 2039 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 17:39:38] CVMFS is ok
[2025-06-03 17:39:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 17:39:38] Checking for apptainer binary...
[2025-06-03 17:39:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 17:39:38] Running /usr/bin/apptainer --version
[2025-06-03 17:39:38] apptainer version 1.3.2-1.el7
[2025-06-03 17:39:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 17:41:25] cg-vwn403.simple-grid.lan
[2025-06-03 17:41:25] apptainer works
[2025-06-03 17:41:25] Set ATHENA_PROC_NUMBER=8
[2025-06-03 17:41:25] Set ATHENA_CORE_NUMBER=8
[2025-06-03 17:41:25] Starting ATLAS job with PandaID=6677495844
[2025-06-03 17:41:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 00:59:21]  *** The last 200 lines of the pilot log: ***
[2025-06-04 00:59:21] 2025-06-03 19:34:19,002 | INFO     | extracted standard info from prmon json
[2025-06-04 00:59:21] 2025-06-03 19:34:19,002 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 00:59:21] 2025-06-03 19:34:19,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 00:59:21] 2025-06-03 19:34:19,003 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 00:59:21] 2025-06-03 19:34:19,003 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 00:59:21] 2025-06-03 19:34:19,008 | INFO     | fitting pss+swap vs Time
[2025-06-04 00:59:21] 2025-06-03 19:34:19,008 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 00:59:21] 2025-06-03 19:34:19,010 | INFO     | sum of deviations: -27689746988.499992
[2025-06-04 00:59:21] 2025-06-03 19:34:19,010 | INFO     | mean x: 1748972405.5
[2025-06-04 00:59:21] 2025-06-03 19:34:19,011 | INFO     | mean y: 2511226.427927928
[2025-06-04 00:59:21] 2025-06-03 19:34:19,011 | INFO     | -- intersect: 14277422242.915295
[2025-06-04 00:59:21] 2025-06-03 19:34:19,011 | INFO     | intersect: 14277422242.915295
[2025-06-04 00:59:21] 2025-06-03 19:34:19,011 | INFO     | chi2: 2.532178057681403
[2025-06-04 00:59:21] 2025-06-03 19:34:19,012 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,013 | INFO     | sum of deviations: -12344877622.999992
[2025-06-04 00:59:21] 2025-06-03 19:34:19,013 | INFO     | mean x: 1748972253.0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,014 | INFO     | mean y: 2521487.6820276496
[2025-06-04 00:59:21] 2025-06-03 19:34:19,014 | INFO     | -- intersect: 6816822374.792502
[2025-06-04 00:59:21] 2025-06-03 19:34:19,014 | INFO     | intersect: 6816822374.792502
[2025-06-04 00:59:21] 2025-06-03 19:34:19,014 | INFO     | chi2: 1.7688649328534856
[2025-06-04 00:59:21] 2025-06-03 19:34:19,014 | INFO     | current chi2=1.7688649328534856 (change=30.144528048191344 %)
[2025-06-04 00:59:21] 2025-06-03 19:34:19,015 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,016 | INFO     | sum of deviations: -11709643417.500004
[2025-06-04 00:59:21] 2025-06-03 19:34:19,016 | INFO     | mean x: 1748972100.5
[2025-06-04 00:59:21] 2025-06-03 19:34:19,017 | INFO     | mean y: 2521940.5424528304
[2025-06-04 00:59:21] 2025-06-03 19:34:19,017 | INFO     | -- intersect: 6934388729.129938
[2025-06-04 00:59:21] 2025-06-03 19:34:19,017 | INFO     | intersect: 6934388729.129938
[2025-06-04 00:59:21] 2025-06-03 19:34:19,017 | INFO     | chi2: 1.7684575199596875
[2025-06-04 00:59:21] 2025-06-03 19:34:19,017 | INFO     | current chi2=1.7684575199596875 (change=0.02303244788401449 %)
[2025-06-04 00:59:21] 2025-06-03 19:34:19,017 | INFO     | right removable region: 211
[2025-06-04 00:59:21] 2025-06-03 19:34:19,018 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,019 | INFO     | sum of deviations: -63527618753.000015
[2025-06-04 00:59:21] 2025-06-03 19:34:19,020 | INFO     | mean x: 1748972558.0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,020 | INFO     | mean y: 2535388.797235023
[2025-06-04 00:59:21] 2025-06-03 19:34:19,020 | INFO     | -- intersect: 35069418798.80558
[2025-06-04 00:59:21] 2025-06-03 19:34:19,020 | INFO     | intersect: 35069418798.80558
[2025-06-04 00:59:21] 2025-06-03 19:34:19,020 | INFO     | chi2: 1.005052495425768
[2025-06-04 00:59:21] 2025-06-03 19:34:19,020 | INFO     | current chi2=1.005052495425768 (change=60.30877479658569 %)
[2025-06-04 00:59:21] 2025-06-03 19:34:19,035 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,046 | INFO     | sum of deviations: -63671473040.0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,046 | INFO     | mean x: 1748972710.5
[2025-06-04 00:59:21] 2025-06-03 19:34:19,046 | INFO     | mean y: 2535454.4245283017
[2025-06-04 00:59:21] 2025-06-03 19:34:19,046 | INFO     | -- intersect: 37694744136.3273
[2025-06-04 00:59:21] 2025-06-03 19:34:19,046 | INFO     | intersect: 37694744136.3273
[2025-06-04 00:59:21] 2025-06-03 19:34:19,046 | INFO     | chi2: 0.981823339335121
[2025-06-04 00:59:21] 2025-06-03 19:34:19,047 | INFO     | current chi2=0.981823339335121 (change=2.3112380891912023 %)
[2025-06-04 00:59:21] 2025-06-03 19:34:19,047 | INFO     | left removable region: 20
[2025-06-04 00:59:21] 2025-06-03 19:34:19,047 | INFO     | sum of square deviations: 2160561440.0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,048 | INFO     | sum of deviations: -34623037336.0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,049 | INFO     | mean x: 1748972680.0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,049 | INFO     | mean y: 2537936.795811518
[2025-06-04 00:59:21] 2025-06-03 19:34:19,049 | INFO     | -- intersect: 28029857724.232162
[2025-06-04 00:59:21] 2025-06-03 19:34:19,049 | INFO     | intersect: 28029857724.232162
[2025-06-04 00:59:21] 2025-06-03 19:34:19,049 | INFO     | chi2: 0.17612045113151376
[2025-06-04 00:59:21] 2025-06-03 19:34:19,049 | INFO     | -- intersect: 28029857724.232162
[2025-06-04 00:59:21] 2025-06-03 19:34:19,049 | INFO     | current memory leak: -16.03 B/s (using 191 data points, chi2=0.18)
[2025-06-04 00:59:21] 2025-06-03 19:34:19,050 | INFO     | ..............................
[2025-06-04 00:59:21] 2025-06-03 19:34:19,051 | INFO     | . Timing measurements:
[2025-06-04 00:59:21] 2025-06-03 19:34:19,051 | INFO     | . get job = 0 s
[2025-06-04 00:59:21] 2025-06-03 19:34:19,051 | INFO     | . initial setup = 5 s
[2025-06-04 00:59:21] 2025-06-03 19:34:19,051 | INFO     | . payload setup = 23 s
[2025-06-04 00:59:21] 2025-06-03 19:34:19,051 | INFO     | . stage-in = 0 s
[2025-06-04 00:59:21] 2025-06-03 19:34:19,051 | INFO     | . payload execution = 13538 s
[2025-06-04 00:59:21] 2025-06-03 19:34:19,051 | INFO     | . stage-out = 4 s
[2025-06-04 00:59:21] 2025-06-03 19:34:19,051 | INFO     | . log creation = 1 s
[2025-06-04 00:59:21] 2025-06-03 19:34:19,051 | INFO     | ..............................
[2025-06-04 00:59:21] 2025-06-03 19:34:19,193 | INFO     | 
[2025-06-04 00:59:21] 2025-06-03 19:34:19,193 | INFO     | job summary report
[2025-06-04 00:59:21] 2025-06-03 19:34:19,193 | INFO     | --------------------------------------------------
[2025-06-04 00:59:21] 2025-06-03 19:34:19,193 | INFO     | PanDA job id: 6677495844
[2025-06-04 00:59:21] 2025-06-03 19:34:19,193 | INFO     | task id: 45006595
[2025-06-04 00:59:21] 2025-06-03 19:34:19,193 | INFO     | errors: (none)
[2025-06-04 00:59:21] 2025-06-03 19:34:19,194 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 00:59:21] 2025-06-03 19:34:19,194 | INFO     | pilot state: finished 
[2025-06-04 00:59:21] 2025-06-03 19:34:19,194 | INFO     | transexitcode: 0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,194 | INFO     | exeerrorcode: 0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,194 | INFO     | exeerrordiag: 
[2025-06-04 00:59:21] 2025-06-03 19:34:19,194 | INFO     | exitcode: 0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,194 | INFO     | exitmsg: OK
[2025-06-04 00:59:21] 2025-06-03 19:34:19,194 | INFO     | cpuconsumptiontime: 50270 s
[2025-06-04 00:59:21] 2025-06-03 19:34:19,194 | INFO     | nevents: 400
[2025-06-04 00:59:21] 2025-06-03 19:34:19,194 | INFO     | neventsw: 0
[2025-06-04 00:59:21] 2025-06-03 19:34:19,194 | INFO     | pid: 29630
[2025-06-04 00:59:21] 2025-06-03 19:34:19,195 | INFO     | pgrp: 29630
[2025-06-04 00:59:21] 2025-06-03 19:34:19,195 | INFO     | corecount: 8
[2025-06-04 00:59:21] 2025-06-03 19:34:19,195 | INFO     | event service: False
[2025-06-04 00:59:21] 2025-06-03 19:34:19,195 | INFO     | sizes: {0: 2405011, 1: 2405210, 12: 2405210, 22: 2405238, 33: 2405266, 44: 2405322, 55: 2405478, 65: 2405506, 76: 2405534, 87: 2405590, 89: 2405824, 98: 2406132, 1
[2025-06-04 00:59:21] 2025-06-03 19:34:19,195 | INFO     | --------------------------------------------------
[2025-06-04 00:59:21] 2025-06-03 19:34:19,195 | INFO     | 
[2025-06-04 00:59:21] 2025-06-03 19:34:19,195 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-04 00:59:21] 2025-06-03 19:34:19,362 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,363 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,363 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,363 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,363 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,363 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,363 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,363 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,363 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,363 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,363 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,364 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,364 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,364 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,364 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,364 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,364 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,364 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 00:59:21] 2025-06-03 19:34:19,364 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,364 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 00:59:21] 2025-06-03 19:34:19,364 | INFO     | job 6677495844 has completed (purged errors)
[2025-06-04 00:59:21] 2025-06-03 19:34:19,365 | INFO     | overall cleanup function is called
[2025-06-04 00:59:21] 2025-06-03 19:34:20,374 | INFO     | --- collectZombieJob: --- 10, [29630]
[2025-06-04 00:59:21] 2025-06-03 19:34:20,374 | INFO     | zombie collector waiting for pid 29630
[2025-06-04 00:59:21] 2025-06-03 19:34:20,374 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 00:59:21] 2025-06-03 19:34:20,374 | INFO     | collected zombie processes
[2025-06-04 00:59:21] 2025-06-03 19:34:20,374 | INFO     | will attempt to kill all subprocesses of pid=29630
[2025-06-04 00:59:21] 2025-06-03 19:34:20,476 | INFO     | process IDs to be killed: [29630] (in reverse order)
[2025-06-04 00:59:21] 2025-06-03 19:34:21,522 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 00:59:21] 2025-06-03 19:34:21,522 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 00:59:21] 2025-06-03 19:34:21,526 | INFO     | did not find any defunct processes belonging to 29630
[2025-06-04 00:59:21] 2025-06-03 19:34:21,531 | INFO     | did not find any defunct processes belonging to 29630
[2025-06-04 00:59:21] 2025-06-03 19:34:21,531 | INFO     | ready for new job
[2025-06-04 00:59:21] 2025-06-03 19:34:21,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 00:59:21] 2025-06-03 19:34:21,534 | INFO     | **************************************
[2025-06-04 00:59:21] 2025-06-03 19:34:21,534 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 00:59:21] 2025-06-03 19:34:21,534 | INFO     | **************************************
[2025-06-04 00:59:21] 2025-06-03 19:34:21,534 | INFO     | 
[2025-06-04 00:59:21] 2025-06-03 19:34:21,540 | INFO     | pilot is running in a VM
[2025-06-04 00:59:21] 2025-06-03 19:34:21,540 | INFO     | architecture information:
[2025-06-04 00:59:21] 2025-06-03 19:34:21,545 | INFO     | executing command: cat /etc/os-release
[2025-06-04 00:59:21] 2025-06-03 19:34:21,737 | INFO     | cat /etc/os-release:
[2025-06-04 00:59:21] NAME="CentOS Linux"
[2025-06-04 00:59:21] VERSION="7 (Core)"
[2025-06-04 00:59:21] ID="centos"
[2025-06-04 00:59:21] ID_LIKE="rhel fedora"
[2025-06-04 00:59:21] VERSION_ID="7"
[2025-06-04 00:59:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 00:59:21] ANSI_COLOR="0;31"
[2025-06-04 00:59:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 00:59:21] HOME_URL="https://www.centos.org/"
[2025-06-04 00:59:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 00:59:21] 
[2025-06-04 00:59:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 00:59:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 00:59:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 00:59:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 00:59:21] 
[2025-06-04 00:59:21] 2025-06-03 19:34:21,738 | INFO     | **************************************
[2025-06-04 00:59:21] 2025-06-03 19:34:22,241 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-04 00:59:21] 2025-06-03 19:34:22,433 | INFO     | sufficient remaining disk space (496859348992 B)
[2025-06-04 00:59:21] 2025-06-03 19:34:22,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 00:59:21] 2025-06-03 19:34:22,434 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 00:59:21] 2025-06-03 19:34:22,434 | INFO     | update_server=False
[2025-06-04 00:59:21] 2025-06-03 19:34:22,435 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 00:59:21] 2025-06-03 19:34:22,436 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 00:59:21] 2025-06-03 19:34:22,436 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 00:59:21] 2025-06-03 19:34:22,436 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 00:59:21] 2025-06-03 19:34:22,437 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 00:59:21] 2025-06-03 19:34:22,439 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 00:59:21] 2025-06-03 19:34:22,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 00:59:21] 2025-06-03 19:34:22,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:59:21] 2025-06-03 19:34:22,443 | INFO     | aborting loop
[2025-06-04 00:59:21] 2025-06-03 19:34:23,054 | INFO     | all payload control threads have been joined
[2025-06-04 00:59:21] 2025-06-03 19:34:23,081 | INFO     | all data control threads have been joined
[2025-06-04 00:59:21] 2025-06-03 19:34:23,441 | INFO     | [job] retrieve thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:23,449 | INFO     | [job] job monitor thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:23,586 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:23,605 | INFO     | [payload] validate_post thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:24,054 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:24,060 | INFO     | [payload] control thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:24,086 | INFO     | [data] control thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:24,141 | INFO     | all job control threads have been joined
[2025-06-04 00:59:21] 2025-06-03 19:34:24,203 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:59:21] 2025-06-03 19:34:24,296 | INFO     | [payload] failed_post thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:24,360 | INFO     | [data] copytool_in thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:24,377 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:24,439 | INFO     | [job] validate thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:24,446 | INFO     | [data] copytool_out thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:24,545 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:25,146 | INFO     | [job] control thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:25,209 | INFO     | [job] queue monitor thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:26,448 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 00:59:21] 2025-06-03 19:34:26,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140169630410560)>', '<ExcThread(monitor, started 140169193707264)>']
[2025-06-04 00:59:21] 2025-06-03 19:34:27,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 00:59:21] 2025-06-03 19:34:27,467 | INFO     | [monitor] control thread has ended
[2025-06-04 00:59:21] 2025-06-03 19:34:31,779 | INFO     | all workflow threads have been joined
[2025-06-04 00:59:21] 2025-06-03 19:34:31,779 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 00:59:21] 2025-06-03 19:34:31,779 | INFO     | traces error code: 0
[2025-06-04 00:59:21] 2025-06-03 19:34:31,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 00:59:21] 2025-06-03 19:34:32,117 [wrapper] ==== pilot stdout END ====
[2025-06-04 00:59:21] 2025-06-03 19:34:32,154 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 00:59:21] 2025-06-03 19:34:32,190 [wrapper] pilotpid: 22989
[2025-06-04 00:59:21] 2025-06-03 19:34:32,293 [wrapper] Pilot exit status: 0
[2025-06-04 00:59:21] 2025-06-03 19:34:32,715 [wrapper] pandaids: 6677495844
[2025-06-04 00:59:21] 2025-06-03 19:34:32,937 [wrapper] cleanup supervisor_pilot  6395 22990
[2025-06-04 00:59:21] 2025-06-03 19:34:33,002 [wrapper] Test setup, not cleaning
[2025-06-04 00:59:21] 2025-06-03 19:34:33,100 [wrapper] apfmon messages muted
[2025-06-04 00:59:21] 2025-06-03 19:34:33,172 [wrapper] ==== wrapper stdout END ====
[2025-06-04 00:59:21] 2025-06-03 19:34:33,262 [wrapper] ==== wrapper stderr END ====
[2025-06-04 00:59:21]  *** Error codes and diagnostics ***
[2025-06-04 00:59:21]     "exeErrorCode": 0,
[2025-06-04 00:59:21]     "exeErrorDiag": "",
[2025-06-04 00:59:21]     "pilotErrorCode": 0,
[2025-06-04 00:59:21]     "pilotErrorDiag": "",
[2025-06-04 00:59:21]  *** Listing of results directory ***
[2025-06-04 00:59:21] total 392388
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc    495897 Jun  3 08:46 pilot3.tar.gz
[2025-06-04 00:59:21] -rwx------. 1 boinc boinc     37140 Jun  3 08:53 runpilot2-wrapper.sh
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc      5111 Jun  3 08:53 queuedata.json
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc       100 Jun  3 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 00:59:21] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 17:39 run_atlas
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc       105 Jun  3 17:39 job.xml
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc      6392 Jun  3 17:39 init_data.xml
[2025-06-04 00:59:21] -rw-r--r--. 2 boinc boinc 215476462 Jun  3 17:39 EVNT.45006593._000920.pool.root.1
[2025-06-04 00:59:21] -rw-r--r--. 2 boinc boinc     15093 Jun  3 17:39 start_atlas.sh
[2025-06-04 00:59:21] drwxrwx--x. 2 boinc boinc        68 Jun  3 17:39 shared
[2025-06-04 00:59:21] -rw-r--r--. 2 boinc boinc    508878 Jun  3 17:39 input.tar.gz
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc         0 Jun  3 17:39 boinc_lockfile
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc      2524 Jun  3 17:41 pandaJob.out
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc    982716 Jun  3 17:44 agis_schedconf.cvmfs.json
[2025-06-04 00:59:21] drwx------. 4 boinc boinc      4096 Jun  3 17:44 pilot3
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc 179394619 Jun  3 21:31 HITS.45006595._022989.pool.root.1
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc       531 Jun  3 21:31 boinc_task_state.xml
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc      1016 Jun  3 21:32 memory_monitor_summary.json
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc   1603667 Jun  3 21:32 agis_ddmendpoints.agis.ALL.json
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc    375096 Jun  3 21:32 log.45006595._022989.job.log.tgz.1
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc        95 Jun  3 21:33 pilot_heartbeat.json
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc      7691 Jun  3 21:34 heartbeat.json
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc      4539 Jun  3 21:34 pilotlog.txt
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc   1184331 Jun  3 21:34 log.45006595._022989.job.log.1
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc       357 Jun  3 21:34 output.list
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc       620 Jun  3 21:34 runtime_log
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc   1576960 Jun  3 21:34 result.tar.gz
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc      8659 Jun  3 21:34 runtime_log.err
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc       656 Jun  3 21:34 4rGODmCiag7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtYiKDmlHwU7m.diag
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc      8192 Jun  4 00:59 boinc_mmap_file
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc        28 Jun  4 00:59 wrapper_checkpoint.txt
[2025-06-04 00:59:21] -rw-r--r--. 1 boinc boinc     20510 Jun  4 00:59 stderr.txt
[2025-06-04 00:59:21] HITS file was successfully produced:
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc 179394619 Jun  3 21:31 shared/HITS.pool.root.1
[2025-06-04 00:59:21]  *** Contents of shared directory: ***
[2025-06-04 00:59:21] total 387676
[2025-06-04 00:59:21] -rw-r--r--. 2 boinc boinc 215476462 Jun  3 17:39 ATLAS.root_0
[2025-06-04 00:59:21] -rw-r--r--. 2 boinc boinc     15093 Jun  3 17:39 start_atlas.sh
[2025-06-04 00:59:21] -rw-r--r--. 2 boinc boinc    508878 Jun  3 17:39 input.tar.gz
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc 179394619 Jun  3 21:31 HITS.pool.root.1
[2025-06-04 00:59:21] -rw-------. 1 boinc boinc   1576960 Jun  3 21:34 result.tar.gz
00:59:23 (9364): run_atlas exited; CPU time 50455.202529
00:59:23 (9364): called boinc_finish(0)

</stderr_txt>
]]>

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