Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:39:17 (3146972): wrapper (7.7.26015): starting
05:39:17 (3146972): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 05:39:17] Arguments: --nthreads 4
[2025-06-06 05:39:17] Threads: 4
[2025-06-06 05:39:17] Checking for CVMFS
[2025-06-06 05:39:17] No cvmfs_config command found, will try listing directly
[2025-06-06 05:39:17] CVMFS is ok
[2025-06-06 05:39:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 05:39:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 05:39:17] Further information can be found at the LHC@home message board.
[2025-06-06 05:39:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 05:39:17] Checking for apptainer binary...
[2025-06-06 05:39:17] which: no apptainer in ((null))
[2025-06-06 05:39:17] apptainer is not installed, using version from CVMFS
[2025-06-06 05:39:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 05:39:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-06-06 05:39:17] apptainer works
[2025-06-06 05:39:17] Set ATHENA_PROC_NUMBER=4
[2025-06-06 05:39:17] Set ATHENA_CORE_NUMBER=4
[2025-06-06 05:39:17] Starting ATLAS job with PandaID=6677495369
[2025-06-06 05:39:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 07:09:37]  *** The last 200 lines of the pilot log: ***
[2025-06-06 07:09:37]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-06 07:09:37]  is_altstaged=None
[2025-06-06 07:09:37]  is_tar=False
[2025-06-06 07:09:37]  lfn=log.45006595._022632.job.log.tgz.1
[2025-06-06 07:09:37]  mtime=0
[2025-06-06 07:09:37]  protocol_id=None
[2025-06-06 07:09:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 07:09:37]  replicas=None
[2025-06-06 07:09:37]  scope=mc23_13p6TeV
[2025-06-06 07:09:37]  status=None
[2025-06-06 07:09:37]  status_code=0
[2025-06-06 07:09:37]  storage_token=
[2025-06-06 07:09:37]  surl=/scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6677495369/log.45006595._022632.job.log.tgz.1
[2025-06-06 07:09:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/41/log.45006595._022632.job.log.tgz.1
[2025-06-06 07:09:37]  workdir=None
[2025-06-06 07:09:37] ]
[2025-06-06 07:09:37] 2025-06-06 05:08:35,618 | INFO     | transferring file log.45006595._022632.job.log.tgz.1 from /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6677495369/log.45006595._022632.job.log.tgz.1 to /scratch/b
[2025-06-06 07:09:37] 2025-06-06 05:08:35,618 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6677495369/log.45006595._022632.job.log.tgz.1 /scratch/boinc/var/slot64/slots/0/lo
[2025-06-06 07:09:37] 2025-06-06 05:08:35,639 | INFO     | adding to output.list: log.45006595._022632.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/41/log.45006595._022632.job.log.tg
[2025-06-06 07:09:37] 2025-06-06 05:08:35,640 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 07:09:37] 2025-06-06 05:08:35,640 | INFO     | summary of transferred files:
[2025-06-06 07:09:37] 2025-06-06 05:08:35,640 | INFO     |  -- lfn=log.45006595._022632.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 07:09:37] 2025-06-06 05:08:35,640 | INFO     | stage-out finished correctly
[2025-06-06 07:09:37] 2025-06-06 05:08:35,702 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 07:09:37] 2025-06-06 05:08:36,375 | INFO     | monitor loop #387: job 0:6677495369 is in state 'finished'
[2025-06-06 07:09:37] 2025-06-06 05:08:36,375 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 07:09:37] 2025-06-06 05:08:37,533 | INFO     | job 6677495369 has state=finished
[2025-06-06 07:09:37] 2025-06-06 05:08:37,533 | INFO     | preparing for final server update for job 6677495369 in state='finished'
[2025-06-06 07:09:37] 2025-06-06 05:08:37,534 | INFO     | this job has now completed (state=finished)
[2025-06-06 07:09:37] 2025-06-06 05:08:37,534 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 07:09:37] 2025-06-06 05:08:37,534 | INFO     | log transfer has been attempted: DONE
[2025-06-06 07:09:37] 2025-06-06 05:08:37,534 | INFO     | job 6677495369 has finished - writing final server update
[2025-06-06 07:09:37] 2025-06-06 05:08:37,534 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_6551/.job.ad'
[2025-06-06 07:09:37] 2025-06-06 05:08:37,534 | INFO     | total number of processed events: 400 (read)
[2025-06-06 07:09:37] 2025-06-06 05:08:37,542 | INFO     | executing command: lscpu
[2025-06-06 07:09:37] 2025-06-06 05:08:37,626 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 07:09:37] 2025-06-06 05:08:38,878 | INFO     | monitor loop #388: job 0:6677495369 is in state 'finished'
[2025-06-06 07:09:37] 2025-06-06 05:08:38,878 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 07:09:37] 2025-06-06 05:08:41,381 | INFO     | monitor loop #389: job 0:6677495369 is in state 'finished'
[2025-06-06 07:09:37] 2025-06-06 05:08:41,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 07:09:37] 2025-06-06 05:08:41,852 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 07:09:37] 2025-06-06 05:08:41,853 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6677495369/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 07:09:37] 2025-06-06 05:08:41,854 | INFO     | extracted standard info from prmon json
[2025-06-06 07:09:37] 2025-06-06 05:08:41,854 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 07:09:37] 2025-06-06 05:08:41,854 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 07:09:37] 2025-06-06 05:08:41,854 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 07:09:37] 2025-06-06 05:08:41,855 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 07:09:37] 2025-06-06 05:08:41,857 | INFO     | fitting pss+swap vs Time
[2025-06-06 07:09:37] 2025-06-06 05:08:41,857 | INFO     | sum of square deviations: 164765880.0
[2025-06-06 07:09:37] 2025-06-06 05:08:41,857 | INFO     | sum of deviations: -10108703450.000006
[2025-06-06 07:09:37] 2025-06-06 05:08:41,857 | INFO     | mean x: 1749183941.0
[2025-06-06 07:09:37] 2025-06-06 05:08:41,857 | INFO     | mean y: 2402726.641975309
[2025-06-06 07:09:37] 2025-06-06 05:08:41,858 | INFO     | -- intersect: 107318199778.01756
[2025-06-06 07:09:37] 2025-06-06 05:08:41,858 | INFO     | intersect: 107318199778.01756
[2025-06-06 07:09:37] 2025-06-06 05:08:41,858 | INFO     | chi2: 0.047593225264515475
[2025-06-06 07:09:37] 2025-06-06 05:08:41,858 | INFO     | -- intersect: 107318199778.01756
[2025-06-06 07:09:37] 2025-06-06 05:08:41,858 | INFO     | current memory leak: -61.35 B/s (using 81 data points, chi2=0.05)
[2025-06-06 07:09:37] 2025-06-06 05:08:41,858 | INFO     | ..............................
[2025-06-06 07:09:37] 2025-06-06 05:08:41,858 | INFO     | . Timing measurements:
[2025-06-06 07:09:37] 2025-06-06 05:08:41,859 | INFO     | . get job = 0 s
[2025-06-06 07:09:37] 2025-06-06 05:08:41,859 | INFO     | . initial setup = 1 s
[2025-06-06 07:09:37] 2025-06-06 05:08:41,859 | INFO     | . payload setup = 7 s
[2025-06-06 07:09:37] 2025-06-06 05:08:41,859 | INFO     | . stage-in = 0 s
[2025-06-06 07:09:37] 2025-06-06 05:08:41,859 | INFO     | . payload execution = 5321 s
[2025-06-06 07:09:37] 2025-06-06 05:08:41,859 | INFO     | . stage-out = 0 s
[2025-06-06 07:09:37] 2025-06-06 05:08:41,859 | INFO     | . log creation = 0 s
[2025-06-06 07:09:37] 2025-06-06 05:08:41,859 | INFO     | ..............................
[2025-06-06 07:09:37] 2025-06-06 05:08:41,947 | INFO     | 
[2025-06-06 07:09:37] 2025-06-06 05:08:41,947 | INFO     | job summary report
[2025-06-06 07:09:37] 2025-06-06 05:08:41,947 | INFO     | --------------------------------------------------
[2025-06-06 07:09:37] 2025-06-06 05:08:41,947 | INFO     | PanDA job id: 6677495369
[2025-06-06 07:09:37] 2025-06-06 05:08:41,947 | INFO     | task id: 45006595
[2025-06-06 07:09:37] 2025-06-06 05:08:41,947 | INFO     | errors: (none)
[2025-06-06 07:09:37] 2025-06-06 05:08:41,947 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 07:09:37] 2025-06-06 05:08:41,947 | INFO     | pilot state: finished 
[2025-06-06 07:09:37] 2025-06-06 05:08:41,947 | INFO     | transexitcode: 0
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | exeerrorcode: 0
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | exeerrordiag: 
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | exitcode: 0
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | exitmsg: OK
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | cpuconsumptiontime: 19988 s
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | nevents: 400
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | neventsw: 0
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | pid: 3158659
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | pgrp: 3158659
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | corecount: 4
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | event service: False
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | sizes: {0: 2397351, 5: 2397557, 11: 2397613, 5331: 2423826, 5332: 2432845, 5338: 2432959}
[2025-06-06 07:09:37] 2025-06-06 05:08:41,948 | INFO     | --------------------------------------------------
[2025-06-06 07:09:37] 2025-06-06 05:08:41,949 | INFO     | 
[2025-06-06 07:09:37] 2025-06-06 05:08:41,949 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-06-06 07:09:37] 2025-06-06 05:08:41,971 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,971 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,971 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,971 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,971 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,971 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,972 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 07:09:37] 2025-06-06 05:08:41,973 | INFO     | job 6677495369 has completed (purged errors)
[2025-06-06 07:09:37] 2025-06-06 05:08:41,973 | INFO     | overall cleanup function is called
[2025-06-06 07:09:37] 2025-06-06 05:08:42,981 | INFO     | --- collectZombieJob: --- 10, [3158659]
[2025-06-06 07:09:37] 2025-06-06 05:08:42,981 | INFO     | zombie collector waiting for pid 3158659
[2025-06-06 07:09:37] 2025-06-06 05:08:42,981 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 07:09:37] 2025-06-06 05:08:42,981 | INFO     | collected zombie processes
[2025-06-06 07:09:37] 2025-06-06 05:08:42,982 | INFO     | will attempt to kill all subprocesses of pid=3158659
[2025-06-06 07:09:37] 2025-06-06 05:08:43,357 | INFO     | process IDs to be killed: [3158659] (in reverse order)
[2025-06-06 07:09:37] 2025-06-06 05:08:43,482 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 07:09:37] 2025-06-06 05:08:43,483 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 07:09:37] 2025-06-06 05:08:43,499 | INFO     | did not find any defunct processes belonging to 3158659
[2025-06-06 07:09:37] 2025-06-06 05:08:43,510 | INFO     | did not find any defunct processes belonging to 3158659
[2025-06-06 07:09:37] 2025-06-06 05:08:43,510 | INFO     | ready for new job
[2025-06-06 07:09:37] 2025-06-06 05:08:43,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 07:09:37] 2025-06-06 05:08:43,512 | INFO     | **************************************
[2025-06-06 07:09:37] 2025-06-06 05:08:43,512 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 07:09:37] 2025-06-06 05:08:43,512 | INFO     | **************************************
[2025-06-06 07:09:37] 2025-06-06 05:08:43,512 | INFO     | 
[2025-06-06 07:09:37] 2025-06-06 05:08:43,517 | INFO     | architecture information:
[2025-06-06 07:09:37] 2025-06-06 05:08:43,518 | INFO     | executing command: cat /etc/os-release
[2025-06-06 07:09:37] 2025-06-06 05:08:43,531 | INFO     | cat /etc/os-release:
[2025-06-06 07:09:37] NAME="CentOS Linux"
[2025-06-06 07:09:37] VERSION="7 (Core)"
[2025-06-06 07:09:37] ID="centos"
[2025-06-06 07:09:37] ID_LIKE="rhel fedora"
[2025-06-06 07:09:37] VERSION_ID="7"
[2025-06-06 07:09:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 07:09:37] ANSI_COLOR="0;31"
[2025-06-06 07:09:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 07:09:37] HOME_URL="https://www.centos.org/"
[2025-06-06 07:09:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 07:09:37] 
[2025-06-06 07:09:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 07:09:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 07:09:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 07:09:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 07:09:37] 
[2025-06-06 07:09:37] 2025-06-06 05:08:43,531 | INFO     | **************************************
[2025-06-06 07:09:37] 2025-06-06 05:08:44,034 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-06-06 07:09:37] 2025-06-06 05:08:44,051 | INFO     | sufficient remaining disk space (3305369501696 B)
[2025-06-06 07:09:37] 2025-06-06 05:08:44,051 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 07:09:37] 2025-06-06 05:08:44,052 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 07:09:37] 2025-06-06 05:08:44,052 | INFO     | update_server=False
[2025-06-06 07:09:37] 2025-06-06 05:08:44,052 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 07:09:37] 2025-06-06 05:08:44,052 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 07:09:37] 2025-06-06 05:08:44,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 07:09:37] 2025-06-06 05:08:44,053 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 07:09:37] 2025-06-06 05:08:44,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 07:09:37] 2025-06-06 05:08:44,054 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 07:09:37] 2025-06-06 05:08:44,070 | INFO     | all job control threads have been joined
[2025-06-06 07:09:37] 2025-06-06 05:08:44,171 | INFO     | all data control threads have been joined
[2025-06-06 07:09:37] 2025-06-06 05:08:44,891 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 07:09:37] 2025-06-06 05:08:44,891 | INFO     | aborting loop
[2025-06-06 07:09:37] 2025-06-06 05:08:45,057 | INFO     | [job] retrieve thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:45,076 | INFO     | [job] control thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:45,176 | INFO     | [data] control thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:45,252 | INFO     | [data] copytool_in thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:45,280 | INFO     | all payload control threads have been joined
[2025-06-06 07:09:37] 2025-06-06 05:08:45,435 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:45,654 | INFO     | [payload] validate_post thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:45,782 | INFO     | [job] validate thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:45,851 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:45,897 | INFO     | [job] job monitor thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:45,946 | INFO     | [payload] failed_post thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:46,059 | INFO     | [data] copytool_out thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:46,270 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:46,285 | INFO     | [payload] control thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:46,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 07:09:37] 2025-06-06 05:08:46,425 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:46,956 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 07:09:37] 2025-06-06 05:08:47,961 | INFO     | [job] queue monitor thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:50,310 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 07:09:37] 2025-06-06 05:08:51,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23271833032512)>', '<ExcThread(monitor, started 23271594489600)>']
[2025-06-06 07:09:37] 2025-06-06 05:08:52,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 07:09:37] 2025-06-06 05:08:52,090 | INFO     | [monitor] control thread has ended
[2025-06-06 07:09:37] 2025-06-06 05:08:56,254 | INFO     | all workflow threads have been joined
[2025-06-06 07:09:37] 2025-06-06 05:08:56,255 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 07:09:37] 2025-06-06 05:08:56,255 | INFO     | traces error code: 0
[2025-06-06 07:09:37] 2025-06-06 05:08:56,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 07:09:37] 2025-06-06 05:08:56,350 [wrapper] ==== pilot stdout END ====
[2025-06-06 07:09:37] 2025-06-06 05:08:56,354 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 07:09:37] 2025-06-06 05:08:56,356 [wrapper] pilotpid: 3150920
[2025-06-06 07:09:37] 2025-06-06 05:08:56,359 [wrapper] Pilot exit status: 0
[2025-06-06 07:09:37] 2025-06-06 05:08:56,370 [wrapper] pandaids: 6677495369
[2025-06-06 07:09:37] 2025-06-06 05:08:56,463 [wrapper] cleanup supervisor_pilot 3357813 3150921
[2025-06-06 07:09:37] 2025-06-06 05:08:56,466 [wrapper] Test setup, not cleaning
[2025-06-06 07:09:37] 2025-06-06 05:08:56,469 [wrapper] apfmon messages muted
[2025-06-06 07:09:37] 2025-06-06 05:08:56,472 [wrapper] ==== wrapper stdout END ====
[2025-06-06 07:09:37] 2025-06-06 05:08:56,474 [wrapper] ==== wrapper stderr END ====
[2025-06-06 07:09:37]  *** Error codes and diagnostics ***
[2025-06-06 07:09:37]     "exeErrorCode": 0,
[2025-06-06 07:09:37]     "exeErrorDiag": "",
[2025-06-06 07:09:37]     "pilotErrorCode": 0,
[2025-06-06 07:09:37]     "pilotErrorDiag": "",
[2025-06-06 07:09:37]  *** Listing of results directory ***
[2025-06-06 07:09:37] total 388564
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc    495897 Jun  3 08:33 pilot3.tar.gz
[2025-06-06 07:09:37] -rwx------ 1 boinc boinc     37140 Jun  3 08:39 runpilot2-wrapper.sh
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc      5111 Jun  3 08:39 queuedata.json
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc       100 Jun  6 05:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 07:09:37] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 05:39 run_atlas
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc       105 Jun  6 05:39 job.xml
[2025-06-06 07:09:37] -rw-r--r-- 2 boinc boinc 218240037 Jun  6 05:39 EVNT.45006593._000905.pool.root.1
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc      6683 Jun  6 05:39 init_data.xml
[2025-06-06 07:09:37] -rw-r--r-- 2 boinc boinc     15093 Jun  6 05:39 start_atlas.sh
[2025-06-06 07:09:37] drwxrwx--x 2 boinc boinc      4096 Jun  6 05:39 shared
[2025-06-06 07:09:37] -rw-r--r-- 2 boinc boinc    508885 Jun  6 05:39 input.tar.gz
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc         0 Jun  6 05:39 boinc_lockfile
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc      2524 Jun  6 05:39 pandaJob.out
[2025-06-06 07:09:37] -rw------- 1 boinc boinc    987721 Jun  6 05:39 agis_schedconf.cvmfs.json
[2025-06-06 07:09:37] -rw------- 1 boinc boinc   1598969 Jun  6 05:39 agis_ddmendpoints.agis.ALL.json
[2025-06-06 07:09:37] drwx------ 4 boinc boinc      4096 Jun  6 05:39 pilot3
[2025-06-06 07:09:37] -rw------- 1 boinc boinc        95 Jun  6 07:08 pilot_heartbeat.json
[2025-06-06 07:09:37] -rw------- 1 boinc boinc 174254894 Jun  6 07:08 HITS.45006595._022632.pool.root.1
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc       528 Jun  6 07:08 boinc_task_state.xml
[2025-06-06 07:09:37] -rw------- 1 boinc boinc      1028 Jun  6 07:08 memory_monitor_summary.json
[2025-06-06 07:09:37] -rw------- 1 boinc boinc    264981 Jun  6 07:08 log.45006595._022632.job.log.tgz.1
[2025-06-06 07:09:37] -rw------- 1 boinc boinc      7699 Jun  6 07:08 heartbeat.json
[2025-06-06 07:09:37] -rw------- 1 boinc boinc      4487 Jun  6 07:08 pilotlog.txt
[2025-06-06 07:09:37] -rw------- 1 boinc boinc    515690 Jun  6 07:08 log.45006595._022632.job.log.1
[2025-06-06 07:09:37] -rw------- 1 boinc boinc       357 Jun  6 07:08 output.list
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc       620 Jun  6 07:08 runtime_log
[2025-06-06 07:09:37] -rw------- 1 boinc boinc    798720 Jun  6 07:08 result.tar.gz
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc      9025 Jun  6 07:08 runtime_log.err
[2025-06-06 07:09:37] -rw------- 1 boinc boinc       662 Jun  6 07:08 Q1EODmVUag7n9Rq4apOajLDm4fhM0noT9bVof3QYDmpfXKDmS9mYum.diag
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc        26 Jun  6 07:09 wrapper_checkpoint.txt
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc      8192 Jun  6 07:09 boinc_mmap_file
[2025-06-06 07:09:37] -rw-r--r-- 1 boinc boinc     21230 Jun  6 07:09 stderr.txt
[2025-06-06 07:09:37] HITS file was successfully produced:
[2025-06-06 07:09:37] -rw------- 1 boinc boinc 174254894 Jun  6 07:08 shared/HITS.pool.root.1
[2025-06-06 07:09:37]  *** Contents of shared directory: ***
[2025-06-06 07:09:37] total 384604
[2025-06-06 07:09:37] -rw-r--r-- 2 boinc boinc 218240037 Jun  6 05:39 ATLAS.root_0
[2025-06-06 07:09:37] -rw-r--r-- 2 boinc boinc     15093 Jun  6 05:39 start_atlas.sh
[2025-06-06 07:09:37] -rw-r--r-- 2 boinc boinc    508885 Jun  6 05:39 input.tar.gz
[2025-06-06 07:09:37] -rw------- 1 boinc boinc 174254894 Jun  6 07:08 HITS.pool.root.1
[2025-06-06 07:09:37] -rw------- 1 boinc boinc    798720 Jun  6 07:08 result.tar.gz
07:09:39 (3146972): run_atlas exited; CPU time 20208.326214
07:09:39 (3146972): called boinc_finish(0)

</stderr_txt>
]]>

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