Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-03 05:42:31 (2924): Detected: vboxwrapper 26206
2025-06-03 05:42:31 (2924): Detected: BOINC client v8.0.2
2025-06-03 05:42:32 (2924): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-03 05:42:32 (2924): Successfully copied 'init_data.xml' to the shared directory.
2025-06-03 05:42:33 (2924): Create VM. (boinc_55c732173c095dec, slot#0)
2025-06-03 05:42:33 (2924): Setting Memory Size for VM. (4400MB)
2025-06-03 05:42:34 (2924): Setting CPU Count for VM. (4)
2025-06-03 05:42:34 (2924): Setting Chipset Options for VM.
2025-06-03 05:42:34 (2924): Setting Graphics Controller Options for VM.
2025-06-03 05:42:34 (2924): Setting Boot Options for VM.
2025-06-03 05:42:35 (2924): Setting Network Configuration for NAT.
2025-06-03 05:42:35 (2924): Enabling VM Network Access.
2025-06-03 05:42:35 (2924): Disabling USB Support for VM.
2025-06-03 05:42:35 (2924): Disabling COM Port Support for VM.
2025-06-03 05:42:36 (2924): Disabling LPT Port Support for VM.
2025-06-03 05:42:36 (2924): Disabling Audio Support for VM.
2025-06-03 05:42:36 (2924): Disabling Clipboard Support for VM.
2025-06-03 05:42:37 (2924): Disabling Drag and Drop Support for VM.
2025-06-03 05:42:37 (2924): Adding storage controller(s) to VM.
2025-06-03 05:42:37 (2924): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-03 05:42:40 (2924): Adding VirtualBox Guest Additions to VM.
2025-06-03 05:42:40 (2924): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-03 05:42:41 (2924): forwarding host port 51528 to guest port 80
2025-06-03 05:42:41 (2924): Enabling remote desktop for VM.
2025-06-03 05:42:41 (2924): Required extension pack not installed, remote desktop not enabled.
2025-06-03 05:42:41 (2924): Enabling shared directory for VM.
2025-06-03 05:42:42 (2924): Starting VM using VBoxManage interface. (boinc_55c732173c095dec, slot#0)
2025-06-03 05:42:47 (2924): Successfully started VM. (PID = '4056')
2025-06-03 05:42:47 (2924): Reporting VM Process ID to BOINC.
2025-06-03 05:42:47 (2924): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-03 05:42:47 (2924): Guest Log: CPUID EDX: 0x178bfbff
2025-06-03 05:42:47 (2924): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-03 05:42:47 (2924): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-03 05:42:47 (2924): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-03 05:42:47 (2924): Detected: Web Application Enabled (http://localhost:51528)
2025-06-03 05:42:47 (2924): Preference change detected
2025-06-03 05:42:47 (2924): Setting CPU throttle for VM. (100%)
2025-06-03 05:42:47 (2924): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-03 05:42:49 (2924): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-03 05:42:49 (2924): Guest Log: BIOS: Booting from Hard Disk...
2025-06-03 05:42:52 (2924): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-03 05:42:52 (2924): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-03 05:42:52 (2924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-03 05:42:56 (2924): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-03 05:42:56 (2924): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-03 05:43:00 (2924): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-03 05:43:00 (2924): Guest Log: 00:00:00.000108 main     Log opened 2025-06-03T05:42:58.497180000Z
2025-06-03 05:43:00 (2924): Guest Log: 00:00:00.000190 main     OS Product: Linux
2025-06-03 05:43:00 (2924): Guest Log: 00:00:00.000216 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-03 05:43:00 (2924): Guest Log: 00:00:00.000238 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-03 05:43:00 (2924): Guest Log: 00:00:00.000259 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-03 05:43:00 (2924): Guest Log: 00:00:00.000260 main     Process ID: 1311
2025-06-03 05:43:00 (2924): Guest Log: 00:00:00.000261 main     Package type: LINUX_64BITS_GENERIC
2025-06-03 05:43:00 (2924): Guest Log: 00:00:00.000847 main     5.2.32 r132073 started. Verbose level = 0
2025-06-03 05:43:00 (2924): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-03 05:43:00 (2924): Guest Log: [INFO] Mounting shared directory
2025-06-03 05:43:00 (2924): Guest Log: [INFO] Checking for init_data.xml
2025-06-03 05:43:10 (2924): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-03 05:43:10 (2924): Guest Log: [INFO] Detected branch: prod
2025-06-03 05:43:10 (2924): Guest Log: 00:00:10.002470 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 305 348 000ns (GuestNow=1 748 947 389 804 428 000 ns GuestLast=1 748 929 378 499 080 000 ns fSetTimeLastLoop=true )
2025-06-03 05:43:10 (2924): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-03 05:43:10 (2924): Guest Log: Copying input files
2025-06-03 05:43:11 (2924): Guest Log: Copied input files into RunAtlas.
2025-06-03 05:43:11 (2924): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-03 05:43:11 (2924): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-03 05:43:11 (2924): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-03 05:43:11 (2924): Guest Log: Further information can be found at the LHC@home message board.
2025-06-03 05:43:23 (2924): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-03 05:43:24 (2924): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-03 05:43:24 (2924): Guest Log: 2.6.3.0 1613 0 32228 146739 4 1 3117617 4096000 0 65024 0 0 n/a 1 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-03 05:43:24 (2924): Guest Log: copied the webapp to /var/www
2025-06-03 05:43:24 (2924): Guest Log: ATHENA_PROC_NUMBER=4
2025-06-03 05:43:24 (2924): Guest Log: ATHENA_CORE_NUMBER=4
2025-06-03 05:43:25 (2924): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-03 05:43:25 (2924): Guest Log:  *** Starting ATLAS job. (PandaID=6677469960 taskID=45006595) ***
2025-06-03 07:13:30 (2924): Guest Log:  *** Job finished ***
2025-06-03 07:13:30 (2924): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:16,724 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:17,147 | INFO     | [data] copytool_out thread has finished
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:20,735 | INFO     | [data] queue_monitor thread has finished
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:22,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140410573162304)>', '<ExcThread(monitor, started 140409317615360)>']
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:23,056 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:23,057 | INFO     | [monitor] control thread has ended
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,203 | INFO     | all workflow threads have been joined
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,204 | INFO     | end of generic workflow (traces error code: 0)
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,204 | INFO     | traces error code: 0
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,204 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,267 [wrapper] ==== pilot stdout END ====
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,271 [wrapper] ==== wrapper stdout RESUME ====
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,275 [wrapper] pilotpid: 5993
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,278 [wrapper] Pilot exit status: 0
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,714 [wrapper] pandaids: 6677469960
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,736 [wrapper] cleanup supervisor_pilot  1813 5994
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,739 [wrapper] Test setup, not cleaning
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,742 [wrapper] apfmon messages muted
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,746 [wrapper] ==== wrapper stdout END ====
2025-06-03 07:13:30 (2924): Guest Log: 2025-06-03 12:13:27,749 [wrapper] ==== wrapper stderr END ====
2025-06-03 07:13:30 (2924): Guest Log:  *** Error codes and diagnostics ***
2025-06-03 07:13:30 (2924): Guest Log:     "exeErrorCode": 0,
2025-06-03 07:13:30 (2924): Guest Log:     "exeErrorDiag": "",
2025-06-03 07:13:30 (2924): Guest Log:     "pilotErrorCode": 0,
2025-06-03 07:13:30 (2924): Guest Log:     "pilotErrorDiag": "",
2025-06-03 07:13:30 (2924): Guest Log:  *** Listing of results directory ***
2025-06-03 07:13:30 (2924): Guest Log: total 178244
2025-06-03 07:13:30 (2924): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 04:53 pilot3.tar.gz
2025-06-03 07:13:30 (2924): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 05:05 queuedata.json
2025-06-03 07:13:30 (2924): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 05:06 runpilot2-wrapper.sh
2025-06-03 07:13:30 (2924): Guest Log: -rwxr-xr-x. 1 atlas atlas      9166 Jun  3 10:43 init_data.xml
2025-06-03 07:13:30 (2924): Guest Log: -rwxr-xr-x. 1 atlas atlas    508884 Jun  3 10:43 input.tar.gz
2025-06-03 07:13:30 (2924): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  3 10:43 start_atlas.sh
2025-06-03 07:13:30 (2924): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  3 10:43 EVNT.45006593._000811.pool.root.1 -> /data/./ATLAS.root_0
2025-06-03 07:13:30 (2924): Guest Log: -rw-r--r--. 1 atlas atlas      2524 Jun  3 10:43 pandaJob.out
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas    984355 Jun  3 10:48 agis_schedconf.cvmfs.json
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  3 10:48 agis_ddmendpoints.agis.ALL.json
2025-06-03 07:13:30 (2924): Guest Log: drwx------. 4 atlas atlas      4096 Jun  3 10:48 pilot3
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas        95 Jun  3 12:12 pilot_heartbeat.json
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas 177320390 Jun  3 12:12 HITS.45006595._020279.pool.root.1
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas      1034 Jun  3 12:12 memory_monitor_summary.json
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas    256811 Jun  3 12:12 log.45006595._020279.job.log.tgz.1
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas      7697 Jun  3 12:13 heartbeat.json
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  3 12:13 pilotlog.txt
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas    461322 Jun  3 12:13 log.45006595._020279.job.log.1
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas       357 Jun  3 12:13 output.list
2025-06-03 07:13:30 (2924): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  3 12:13 runtime_log
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas    737280 Jun  3 12:13 result.tar.gz
2025-06-03 07:13:30 (2924): Guest Log: -rw-r--r--. 1 atlas atlas      8591 Jun  3 12:13 runtime_log.err
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas       655 Jun  3 12:13 7SZKDmM2Yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDml5hKDmIwat3n.diag
2025-06-03 07:13:30 (2924): Guest Log: Looking for outputfile HITS.45006595._020279.pool.root.1
2025-06-03 07:13:30 (2924): Guest Log: HITS file was successfully produced
2025-06-03 07:13:30 (2924): Guest Log: -rw-------. 1 atlas atlas 177320390 Jun  3 12:12 /home/atlas/RunAtlas/HITS.45006595._020279.pool.root.1
2025-06-03 07:13:31 (2924): Guest Log: Successfully finished the ATLAS job!
2025-06-03 07:13:31 (2924): Guest Log: Copying the results back to the shared directory!
2025-06-03 07:13:31 (2924): Guest Log:  *** Contents of shared directory: ***
2025-06-03 07:13:31 (2924): Guest Log: total 386588
2025-06-03 07:13:31 (2924): Guest Log: -rwxrwxrwx. 1 root root 217262916 Jun  3 10:42 ATLAS.root_0
2025-06-03 07:13:31 (2924): Guest Log: -rwxrwxrwx. 1 root root 177320390 Jun  3  2025 HITS.pool.root.1
2025-06-03 07:13:31 (2924): Guest Log: -rwxrwxrwx. 1 root root      9166 Jun  3 10:42 init_data.xml
2025-06-03 07:13:31 (2924): Guest Log: -rwxrwxrwx. 1 root root    508884 Jun  3 09:15 input.tar.gz
2025-06-03 07:13:31 (2924): Guest Log: -rwxrwxrwx. 1 root root    737280 Jun  3  2025 result.tar.gz
2025-06-03 07:13:31 (2924): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 09:15 start_atlas.sh
2025-06-03 07:13:31 (2924): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-03 07:13:31 (2924): VM Completion File Detected.
2025-06-03 07:13:31 (2924): Powering off VM.
2025-06-03 07:13:31 (2924): Successfully stopped VM.
2025-06-03 07:13:31 (2924): Deregistering VM. (boinc_55c732173c095dec, slot#0)
2025-06-03 07:13:31 (2924): Removing network bandwidth throttle group from VM.
2025-06-03 07:13:32 (2924): Removing VM from VirtualBox.
07:13:37 (2924): called boinc_finish(0)

</stderr_txt>
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