Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:37:38 (29750): wrapper (7.7.26015): starting
18:37:38 (29750): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 18:37:38] Arguments: --nthreads 8
[2025-06-03 18:37:38] Threads: 8
[2025-06-03 18:37:38] Checking for CVMFS
[2025-06-03 18:37:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 18:37:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 18:39:13] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 18:39:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 18:39:18] 2.11.2.0 16344 32019 88524 146749 2 211 16434340 25165825 4275 130560 0 16406612 99.784 19268567 2052 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 18:39:18] CVMFS is ok
[2025-06-03 18:39:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 18:39:18] Checking for apptainer binary...
[2025-06-03 18:39:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 18:39:18] Running /usr/bin/apptainer --version
[2025-06-03 18:39:18] apptainer version 1.3.2-1.el7
[2025-06-03 18:39:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 18:40:54] cg-vwn432.simple-grid.lan
[2025-06-03 18:40:54] apptainer works
[2025-06-03 18:40:54] Set ATHENA_PROC_NUMBER=8
[2025-06-03 18:40:54] Set ATHENA_CORE_NUMBER=8
[2025-06-03 18:40:54] Starting ATLAS job with PandaID=6677495393
[2025-06-03 18:40:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 22:27:33]  *** The last 200 lines of the pilot log: ***
[2025-06-03 22:27:33] 2025-06-03 20:25:52,126 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6677495393/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 22:27:33] 2025-06-03 20:25:52,127 | INFO     | extracted standard info from prmon json
[2025-06-03 22:27:33] 2025-06-03 20:25:52,127 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 22:27:33] 2025-06-03 20:25:52,127 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 22:27:33] 2025-06-03 20:25:52,127 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 22:27:33] 2025-06-03 20:25:52,127 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 22:27:33] 2025-06-03 20:25:52,132 | INFO     | fitting pss+swap vs Time
[2025-06-03 22:27:33] 2025-06-03 20:25:52,133 | INFO     | sum of square deviations: 3168461268.0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,143 | INFO     | sum of deviations: -48438009286.0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,143 | INFO     | mean x: 1748975626.0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,144 | INFO     | mean y: 2522036.124423963
[2025-06-03 22:27:33] 2025-06-03 20:25:52,144 | INFO     | -- intersect: 26740073941.45378
[2025-06-03 22:27:33] 2025-06-03 20:25:52,144 | INFO     | intersect: 26740073941.45378
[2025-06-03 22:27:33] 2025-06-03 20:25:52,144 | INFO     | chi2: 2.5515087861323544
[2025-06-03 22:27:33] 2025-06-03 20:25:52,145 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,147 | INFO     | sum of deviations: -32585399008.999996
[2025-06-03 22:27:33] 2025-06-03 20:25:52,147 | INFO     | mean x: 1748975473.5
[2025-06-03 22:27:33] 2025-06-03 20:25:52,147 | INFO     | mean y: 2533141.9716981133
[2025-06-03 22:27:33] 2025-06-03 20:25:52,147 | INFO     | -- intersect: 19292452804.65604
[2025-06-03 22:27:33] 2025-06-03 20:25:52,147 | INFO     | intersect: 19292452804.65604
[2025-06-03 22:27:33] 2025-06-03 20:25:52,148 | INFO     | chi2: 1.7831355502828599
[2025-06-03 22:27:33] 2025-06-03 20:25:52,148 | INFO     | current chi2=1.7831355502828599 (change=30.114465606611347 %)
[2025-06-03 22:27:33] 2025-06-03 20:25:52,148 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,150 | INFO     | sum of deviations: -31222035284.0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,150 | INFO     | mean x: 1748975321.0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,150 | INFO     | mean y: 2534160.879227053
[2025-06-03 22:27:33] 2025-06-03 20:25:52,150 | INFO     | -- intersect: 19857336451.15142
[2025-06-03 22:27:33] 2025-06-03 20:25:52,151 | INFO     | intersect: 19857336451.15142
[2025-06-03 22:27:33] 2025-06-03 20:25:52,151 | INFO     | chi2: 1.780769826790757
[2025-06-03 22:27:33] 2025-06-03 20:25:52,151 | INFO     | current chi2=1.780769826790757 (change=0.13267210626402287 %)
[2025-06-03 22:27:33] 2025-06-03 20:25:52,157 | INFO     | right removable region: 206
[2025-06-03 22:27:33] 2025-06-03 20:25:52,158 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,160 | INFO     | sum of deviations: -82910326784.99998
[2025-06-03 22:27:33] 2025-06-03 20:25:52,160 | INFO     | mean x: 1748975778.5
[2025-06-03 22:27:33] 2025-06-03 20:25:52,160 | INFO     | mean y: 2546358.320754717
[2025-06-03 22:27:33] 2025-06-03 20:25:52,160 | INFO     | -- intersect: 49083848734.028824
[2025-06-03 22:27:33] 2025-06-03 20:25:52,161 | INFO     | intersect: 49083848734.028824
[2025-06-03 22:27:33] 2025-06-03 20:25:52,161 | INFO     | chi2: 1.020062593046517
[2025-06-03 22:27:33] 2025-06-03 20:25:52,161 | INFO     | current chi2=1.020062593046517 (change=60.021200060503986 %)
[2025-06-03 22:27:33] 2025-06-03 20:25:52,162 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,163 | INFO     | sum of deviations: -80323898237.0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,164 | INFO     | mean x: 1748975931.0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,164 | INFO     | mean y: 2544395.033816425
[2025-06-03 22:27:33] 2025-06-03 20:25:52,164 | INFO     | -- intersect: 51082355829.669235
[2025-06-03 22:27:33] 2025-06-03 20:25:52,164 | INFO     | intersect: 51082355829.669235
[2025-06-03 22:27:33] 2025-06-03 20:25:52,164 | INFO     | chi2: 1.0077835601737675
[2025-06-03 22:27:33] 2025-06-03 20:25:52,164 | INFO     | current chi2=1.0077835601737675 (change=1.2037528830536788 %)
[2025-06-03 22:27:33] 2025-06-03 20:25:52,165 | INFO     | left removable region: 20
[2025-06-03 22:27:33] 2025-06-03 20:25:52,165 | INFO     | sum of square deviations: 1995283922.5
[2025-06-03 22:27:33] 2025-06-03 20:25:52,166 | INFO     | sum of deviations: -51421430622.5
[2025-06-03 22:27:33] 2025-06-03 20:25:52,167 | INFO     | mean x: 1748975900.5
[2025-06-03 22:27:33] 2025-06-03 20:25:52,167 | INFO     | mean y: 2549036.8440860217
[2025-06-03 22:27:33] 2025-06-03 20:25:52,167 | INFO     | -- intersect: 45076256048.57651
[2025-06-03 22:27:33] 2025-06-03 20:25:52,167 | INFO     | intersect: 45076256048.57651
[2025-06-03 22:27:33] 2025-06-03 20:25:52,167 | INFO     | chi2: 0.20312377590751665
[2025-06-03 22:27:33] 2025-06-03 20:25:52,168 | INFO     | -- intersect: 45076256048.57651
[2025-06-03 22:27:33] 2025-06-03 20:25:52,168 | INFO     | current memory leak: -25.77 B/s (using 186 data points, chi2=0.20)
[2025-06-03 22:27:33] 2025-06-03 20:25:52,169 | INFO     | ..............................
[2025-06-03 22:27:33] 2025-06-03 20:25:52,169 | INFO     | . Timing measurements:
[2025-06-03 22:27:33] 2025-06-03 20:25:52,169 | INFO     | . get job = 0 s
[2025-06-03 22:27:33] 2025-06-03 20:25:52,169 | INFO     | . initial setup = 2 s
[2025-06-03 22:27:33] 2025-06-03 20:25:52,169 | INFO     | . payload setup = 35 s
[2025-06-03 22:27:33] 2025-06-03 20:25:52,169 | INFO     | . stage-in = 0 s
[2025-06-03 22:27:33] 2025-06-03 20:25:52,169 | INFO     | . payload execution = 13237 s
[2025-06-03 22:27:33] 2025-06-03 20:25:52,169 | INFO     | . stage-out = 4 s
[2025-06-03 22:27:33] 2025-06-03 20:25:52,170 | INFO     | . log creation = 1 s
[2025-06-03 22:27:33] 2025-06-03 20:25:52,170 | INFO     | ..............................
[2025-06-03 22:27:33] 2025-06-03 20:25:52,564 | INFO     | 
[2025-06-03 22:27:33] 2025-06-03 20:25:52,565 | INFO     | job summary report
[2025-06-03 22:27:33] 2025-06-03 20:25:52,565 | INFO     | --------------------------------------------------
[2025-06-03 22:27:33] 2025-06-03 20:25:52,565 | INFO     | PanDA job id: 6677495393
[2025-06-03 22:27:33] 2025-06-03 20:25:52,565 | INFO     | task id: 45006595
[2025-06-03 22:27:33] 2025-06-03 20:25:52,565 | INFO     | errors: (none)
[2025-06-03 22:27:33] 2025-06-03 20:25:52,565 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 22:27:33] 2025-06-03 20:25:52,565 | INFO     | pilot state: finished 
[2025-06-03 22:27:33] 2025-06-03 20:25:52,565 | INFO     | transexitcode: 0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,565 | INFO     | exeerrorcode: 0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,565 | INFO     | exeerrordiag: 
[2025-06-03 22:27:33] 2025-06-03 20:25:52,565 | INFO     | exitcode: 0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,566 | INFO     | exitmsg: OK
[2025-06-03 22:27:33] 2025-06-03 20:25:52,566 | INFO     | cpuconsumptiontime: 50413 s
[2025-06-03 22:27:33] 2025-06-03 20:25:52,566 | INFO     | nevents: 400
[2025-06-03 22:27:33] 2025-06-03 20:25:52,566 | INFO     | neventsw: 0
[2025-06-03 22:27:33] 2025-06-03 20:25:52,566 | INFO     | pid: 13647
[2025-06-03 22:27:33] 2025-06-03 20:25:52,566 | INFO     | pgrp: 13647
[2025-06-03 22:27:33] 2025-06-03 20:25:52,566 | INFO     | corecount: 8
[2025-06-03 22:27:33] 2025-06-03 20:25:52,566 | INFO     | event service: False
[2025-06-03 22:27:33] 2025-06-03 20:25:52,566 | INFO     | sizes: {0: 2405011, 1: 2405210, 12: 2405210, 16: 2405444, 22: 2405472, 13277: 2435178, 13282: 2444119, 13284: 2444175, 13376: 2444345}
[2025-06-03 22:27:33] 2025-06-03 20:25:52,566 | INFO     | --------------------------------------------------
[2025-06-03 22:27:33] 2025-06-03 20:25:52,566 | INFO     | 
[2025-06-03 22:27:33] 2025-06-03 20:25:52,567 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-03 22:27:33] 2025-06-03 20:25:52,947 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,947 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,947 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,948 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,948 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,948 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,948 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,948 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,948 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,948 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,948 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,948 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,949 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,949 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,949 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,949 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,949 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 22:27:33] 2025-06-03 20:25:52,949 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,949 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 22:27:33] 2025-06-03 20:25:52,949 | INFO     | job 6677495393 has completed (purged errors)
[2025-06-03 22:27:33] 2025-06-03 20:25:52,949 | INFO     | overall cleanup function is called
[2025-06-03 22:27:33] 2025-06-03 20:25:53,958 | INFO     | --- collectZombieJob: --- 10, [13647]
[2025-06-03 22:27:33] 2025-06-03 20:25:53,959 | INFO     | zombie collector waiting for pid 13647
[2025-06-03 22:27:33] 2025-06-03 20:25:53,959 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 22:27:33] 2025-06-03 20:25:53,959 | INFO     | collected zombie processes
[2025-06-03 22:27:33] 2025-06-03 20:25:53,959 | INFO     | will attempt to kill all subprocesses of pid=13647
[2025-06-03 22:27:33] 2025-06-03 20:25:54,084 | INFO     | process IDs to be killed: [13647] (in reverse order)
[2025-06-03 22:27:33] 2025-06-03 20:25:54,957 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 22:27:33] 2025-06-03 20:25:54,957 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 22:27:33] 2025-06-03 20:25:54,961 | INFO     | did not find any defunct processes belonging to 13647
[2025-06-03 22:27:33] 2025-06-03 20:25:54,965 | INFO     | did not find any defunct processes belonging to 13647
[2025-06-03 22:27:33] 2025-06-03 20:25:54,965 | INFO     | ready for new job
[2025-06-03 22:27:33] 2025-06-03 20:25:54,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 22:27:33] 2025-06-03 20:25:54,967 | INFO     | **************************************
[2025-06-03 22:27:33] 2025-06-03 20:25:54,967 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 22:27:33] 2025-06-03 20:25:54,967 | INFO     | **************************************
[2025-06-03 22:27:33] 2025-06-03 20:25:54,968 | INFO     | 
[2025-06-03 22:27:33] 2025-06-03 20:25:54,968 | INFO     | pilot is running in a VM
[2025-06-03 22:27:33] 2025-06-03 20:25:54,968 | INFO     | architecture information:
[2025-06-03 22:27:33] 2025-06-03 20:25:54,970 | INFO     | executing command: cat /etc/os-release
[2025-06-03 22:27:33] 2025-06-03 20:25:55,216 | INFO     | cat /etc/os-release:
[2025-06-03 22:27:33] NAME="CentOS Linux"
[2025-06-03 22:27:33] VERSION="7 (Core)"
[2025-06-03 22:27:33] ID="centos"
[2025-06-03 22:27:33] ID_LIKE="rhel fedora"
[2025-06-03 22:27:33] VERSION_ID="7"
[2025-06-03 22:27:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 22:27:33] ANSI_COLOR="0;31"
[2025-06-03 22:27:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 22:27:33] HOME_URL="https://www.centos.org/"
[2025-06-03 22:27:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 22:27:33] 
[2025-06-03 22:27:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 22:27:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 22:27:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 22:27:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 22:27:33] 
[2025-06-03 22:27:33] 2025-06-03 20:25:55,217 | INFO     | **************************************
[2025-06-03 22:27:33] 2025-06-03 20:25:55,721 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-03 22:27:33] 2025-06-03 20:25:55,940 | INFO     | sufficient remaining disk space (496816357376 B)
[2025-06-03 22:27:33] 2025-06-03 20:25:55,940 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 22:27:33] 2025-06-03 20:25:55,941 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 22:27:33] 2025-06-03 20:25:55,941 | INFO     | update_server=False
[2025-06-03 22:27:33] 2025-06-03 20:25:55,941 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 22:27:33] 2025-06-03 20:25:55,941 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 22:27:33] 2025-06-03 20:25:55,942 | INFO     | aborting loop
[2025-06-03 22:27:33] 2025-06-03 20:25:56,166 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 22:27:33] 2025-06-03 20:25:56,166 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 22:27:33] 2025-06-03 20:25:56,166 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 22:27:33] 2025-06-03 20:25:56,217 | INFO     | all job control threads have been joined
[2025-06-03 22:27:33] 2025-06-03 20:25:56,690 | INFO     | all data control threads have been joined
[2025-06-03 22:27:33] 2025-06-03 20:25:56,874 | INFO     | all payload control threads have been joined
[2025-06-03 22:27:33] 2025-06-03 20:25:56,947 | INFO     | [job] retrieve thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:56,948 | INFO     | [job] job monitor thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:57,051 | INFO     | [payload] failed_post thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:57,224 | INFO     | [job] control thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:57,230 | INFO     | [payload] validate_post thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:57,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 22:27:33] 2025-06-03 20:25:57,336 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 22:27:33] 2025-06-03 20:25:57,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 22:27:33] 2025-06-03 20:25:57,599 | INFO     | [job] validate thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:57,696 | INFO     | [data] control thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:57,779 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:57,825 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:57,880 | INFO     | [payload] control thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:57,882 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:58,039 | INFO     | [data] copytool_in thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:58,159 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:58,374 | INFO     | [job] queue monitor thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:25:59,343 | INFO     | [data] copytool_out thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:26:01,342 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 22:27:33] 2025-06-03 20:26:01,817 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140339229669184)>', '<ExcThread(monitor, started 140338660374272)>']
[2025-06-03 22:27:33] 2025-06-03 20:26:02,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 22:27:33] 2025-06-03 20:26:02,201 | INFO     | [monitor] control thread has ended
[2025-06-03 22:27:33] 2025-06-03 20:26:06,842 | INFO     | all workflow threads have been joined
[2025-06-03 22:27:33] 2025-06-03 20:26:06,843 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 22:27:33] 2025-06-03 20:26:06,843 | INFO     | traces error code: 0
[2025-06-03 22:27:33] 2025-06-03 20:26:06,843 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 22:27:33] 2025-06-03 20:26:07,292 [wrapper] ==== pilot stdout END ====
[2025-06-03 22:27:33] 2025-06-03 20:26:07,357 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 22:27:33] 2025-06-03 20:26:07,407 [wrapper] pilotpid: 1098
[2025-06-03 22:27:33] 2025-06-03 20:26:07,468 [wrapper] Pilot exit status: 0
[2025-06-03 22:27:33] 2025-06-03 20:26:07,927 [wrapper] pandaids: 6677495393
[2025-06-03 22:27:33] 2025-06-03 20:26:08,971 [wrapper] cleanup supervisor_pilot  2864 1099
[2025-06-03 22:27:33] 2025-06-03 20:26:09,025 [wrapper] Test setup, not cleaning
[2025-06-03 22:27:33] 2025-06-03 20:26:09,156 [wrapper] apfmon messages muted
[2025-06-03 22:27:33] 2025-06-03 20:26:09,254 [wrapper] ==== wrapper stdout END ====
[2025-06-03 22:27:33] 2025-06-03 20:26:09,322 [wrapper] ==== wrapper stderr END ====
[2025-06-03 22:27:33]  *** Error codes and diagnostics ***
[2025-06-03 22:27:33]     "exeErrorCode": 0,
[2025-06-03 22:27:33]     "exeErrorDiag": "",
[2025-06-03 22:27:33]     "pilotErrorCode": 0,
[2025-06-03 22:27:33]     "pilotErrorDiag": "",
[2025-06-03 22:27:33]  *** Listing of results directory ***
[2025-06-03 22:27:33] total 391012
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc    495897 Jun  3 08:33 pilot3.tar.gz
[2025-06-03 22:27:33] -rwx------. 1 boinc boinc     37140 Jun  3 08:42 runpilot2-wrapper.sh
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc      5111 Jun  3 08:42 queuedata.json
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc       100 Jun  3 18:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 22:27:33] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 18:37 run_atlas
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc       105 Jun  3 18:37 job.xml
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc      6391 Jun  3 18:37 init_data.xml
[2025-06-03 22:27:33] -rw-r--r--. 2 boinc boinc 216348906 Jun  3 18:37 EVNT.45006593._000906.pool.root.1
[2025-06-03 22:27:33] -rw-r--r--. 2 boinc boinc     15093 Jun  3 18:37 start_atlas.sh
[2025-06-03 22:27:33] drwxrwx--x. 2 boinc boinc        68 Jun  3 18:37 shared
[2025-06-03 22:27:33] -rw-r--r--. 2 boinc boinc    508877 Jun  3 18:37 input.tar.gz
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc         0 Jun  3 18:37 boinc_lockfile
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc      2524 Jun  3 18:40 pandaJob.out
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc    983734 Jun  3 18:41 agis_schedconf.cvmfs.json
[2025-06-03 22:27:33] drwx------. 4 boinc boinc      4096 Jun  3 18:41 pilot3
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc 177118802 Jun  3 22:23 HITS.45006595._022656.pool.root.1
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc       530 Jun  3 22:23 boinc_task_state.xml
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc      1014 Jun  3 22:24 memory_monitor_summary.json
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc   1603667 Jun  3 22:24 agis_ddmendpoints.agis.ALL.json
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc    392348 Jun  3 22:24 log.45006595._022656.job.log.tgz.1
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc        95 Jun  3 22:25 pilot_heartbeat.json
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc      7689 Jun  3 22:25 heartbeat.json
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc      4416 Jun  3 22:26 pilotlog.txt
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc   1160334 Jun  3 22:26 log.45006595._022656.job.log.1
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc       357 Jun  3 22:26 output.list
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc       620 Jun  3 22:26 runtime_log
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc   1576960 Jun  3 22:26 result.tar.gz
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc      8659 Jun  3 22:26 runtime_log.err
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc       656 Jun  3 22:26 CT9NDmRXag7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIUiKDmy61uUn.diag
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc      8192 Jun  3 22:27 boinc_mmap_file
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc        28 Jun  3 22:27 wrapper_checkpoint.txt
[2025-06-03 22:27:33] -rw-r--r--. 1 boinc boinc     20489 Jun  3 22:27 stderr.txt
[2025-06-03 22:27:33] HITS file was successfully produced:
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc 177118802 Jun  3 22:23 shared/HITS.pool.root.1
[2025-06-03 22:27:33]  *** Contents of shared directory: ***
[2025-06-03 22:27:33] total 386304
[2025-06-03 22:27:33] -rw-r--r--. 2 boinc boinc 216348906 Jun  3 18:37 ATLAS.root_0
[2025-06-03 22:27:33] -rw-r--r--. 2 boinc boinc     15093 Jun  3 18:37 start_atlas.sh
[2025-06-03 22:27:33] -rw-r--r--. 2 boinc boinc    508877 Jun  3 18:37 input.tar.gz
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc 177118802 Jun  3 22:23 HITS.pool.root.1
[2025-06-03 22:27:33] -rw-------. 1 boinc boinc   1576960 Jun  3 22:26 result.tar.gz
22:27:35 (29750): run_atlas exited; CPU time 50600.882927
22:27:35 (29750): called boinc_finish(0)

</stderr_txt>
]]>

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