Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:05:42 (1854): wrapper (7.7.26015): starting
20:05:42 (1854): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 20:05:42] Arguments: --nthreads 8
[2025-06-03 20:05:42] Threads: 8
[2025-06-03 20:05:42] Checking for CVMFS
[2025-06-03 20:05:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:05:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:05:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:05:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:05:44] 2.11.2.0 555 32217 98456 146750 0 114 13862089 25165824 4371 130560 0 17011298 99.810 20191068 2715 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 20:05:44] CVMFS is ok
[2025-06-03 20:05:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:05:44] Checking for apptainer binary...
[2025-06-03 20:05:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:05:44] Running /usr/bin/apptainer --version
[2025-06-03 20:05:44] apptainer version 1.3.2-1.el7
[2025-06-03 20:05:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:05:45] cg-vwn340.simple-grid.lan
[2025-06-03 20:05:45] apptainer works
[2025-06-03 20:05:45] Set ATHENA_PROC_NUMBER=8
[2025-06-03 20:05:45] Set ATHENA_CORE_NUMBER=8
[2025-06-03 20:05:45] Starting ATLAS job with PandaID=6677469018
[2025-06-03 20:05:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 01:06:44]  *** The last 200 lines of the pilot log: ***
[2025-06-04 01:06:44] 2025-06-03 21:45:03,541 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6677469018/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 01:06:44] 2025-06-03 21:45:03,542 | INFO     | extracted standard info from prmon json
[2025-06-04 01:06:44] 2025-06-03 21:45:03,542 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 01:06:44] 2025-06-03 21:45:03,542 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 01:06:44] 2025-06-03 21:45:03,543 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 01:06:44] 2025-06-03 21:45:03,543 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 01:06:44] 2025-06-03 21:45:03,548 | INFO     | fitting pss+swap vs Time
[2025-06-04 01:06:44] 2025-06-03 21:45:03,549 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,550 | INFO     | sum of deviations: -53671208924.0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,565 | INFO     | mean x: 1748980493.0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,565 | INFO     | mean y: 2539487.96713615
[2025-06-04 01:06:44] 2025-06-03 21:45:03,565 | INFO     | -- intersect: 31329530443.447327
[2025-06-04 01:06:44] 2025-06-03 21:45:03,566 | INFO     | intersect: 31329530443.447327
[2025-06-04 01:06:44] 2025-06-03 21:45:03,566 | INFO     | chi2: 2.695473569045
[2025-06-04 01:06:44] 2025-06-03 21:45:03,566 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,568 | INFO     | sum of deviations: -37085961746.0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,568 | INFO     | mean x: 1748980340.5
[2025-06-04 01:06:44] 2025-06-03 21:45:03,569 | INFO     | mean y: 2551556.480769231
[2025-06-04 01:06:44] 2025-06-03 21:45:03,569 | INFO     | -- intersect: 23247901216.775078
[2025-06-04 01:06:44] 2025-06-03 21:45:03,569 | INFO     | intersect: 23247901216.775078
[2025-06-04 01:06:44] 2025-06-03 21:45:03,569 | INFO     | chi2: 1.877630183410957
[2025-06-04 01:06:44] 2025-06-03 21:45:03,569 | INFO     | current chi2=1.877630183410957 (change=30.34136171937323 %)
[2025-06-04 01:06:44] 2025-06-03 21:45:03,570 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,571 | INFO     | sum of deviations: -35147979424.0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,572 | INFO     | mean x: 1748980188.0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,572 | INFO     | mean y: 2553061.5714285714
[2025-06-04 01:06:44] 2025-06-03 21:45:03,572 | INFO     | -- intersect: 23701511245.24905
[2025-06-04 01:06:44] 2025-06-03 21:45:03,572 | INFO     | intersect: 23701511245.24905
[2025-06-04 01:06:44] 2025-06-03 21:45:03,572 | INFO     | chi2: 1.8758390550531876
[2025-06-04 01:06:44] 2025-06-03 21:45:03,573 | INFO     | current chi2=1.8758390550531876 (change=0.09539303179050866 %)
[2025-06-04 01:06:44] 2025-06-03 21:45:03,573 | INFO     | right removable region: 202
[2025-06-04 01:06:44] 2025-06-03 21:45:03,573 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,575 | INFO     | sum of deviations: -90367420838.5
[2025-06-04 01:06:44] 2025-06-03 21:45:03,575 | INFO     | mean x: 1748980645.5
[2025-06-04 01:06:44] 2025-06-03 21:45:03,575 | INFO     | mean y: 2566396.081730769
[2025-06-04 01:06:44] 2025-06-03 21:45:03,575 | INFO     | -- intersect: 56644556052.40677
[2025-06-04 01:06:44] 2025-06-03 21:45:03,575 | INFO     | intersect: 56644556052.40677
[2025-06-04 01:06:44] 2025-06-03 21:45:03,575 | INFO     | chi2: 1.0575638814764385
[2025-06-04 01:06:44] 2025-06-03 21:45:03,575 | INFO     | current chi2=1.0575638814764385 (change=60.76519192688167 %)
[2025-06-04 01:06:44] 2025-06-03 21:45:03,576 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,577 | INFO     | sum of deviations: -88320806086.99998
[2025-06-04 01:06:44] 2025-06-03 21:45:03,578 | INFO     | mean x: 1748980798.0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,578 | INFO     | mean y: 2564777.369458128
[2025-06-04 01:06:44] 2025-06-03 21:45:03,578 | INFO     | -- intersect: 59553977249.160736
[2025-06-04 01:06:44] 2025-06-03 21:45:03,578 | INFO     | intersect: 59553977249.160736
[2025-06-04 01:06:44] 2025-06-03 21:45:03,578 | INFO     | chi2: 1.0411604660616893
[2025-06-04 01:06:44] 2025-06-03 21:45:03,578 | INFO     | current chi2=1.0411604660616893 (change=1.551056697572615 %)
[2025-06-04 01:06:44] 2025-06-03 21:45:03,578 | INFO     | left removable region: 20
[2025-06-04 01:06:44] 2025-06-03 21:45:03,579 | INFO     | sum of square deviations: 1869302025.5
[2025-06-04 01:06:44] 2025-06-03 21:45:03,580 | INFO     | sum of deviations: -59634379549.49999
[2025-06-04 01:06:44] 2025-06-03 21:45:03,580 | INFO     | mean x: 1748980767.5
[2025-06-04 01:06:44] 2025-06-03 21:45:03,580 | INFO     | mean y: 2572465.1483516484
[2025-06-04 01:06:44] 2025-06-03 21:45:03,580 | INFO     | -- intersect: 55798469271.05528
[2025-06-04 01:06:44] 2025-06-03 21:45:03,580 | INFO     | intersect: 55798469271.05528
[2025-06-04 01:06:44] 2025-06-03 21:45:03,581 | INFO     | chi2: 0.18324289852883066
[2025-06-04 01:06:44] 2025-06-03 21:45:03,581 | INFO     | -- intersect: 55798469271.05528
[2025-06-04 01:06:44] 2025-06-03 21:45:03,581 | INFO     | current memory leak: -31.90 B/s (using 182 data points, chi2=0.18)
[2025-06-04 01:06:44] 2025-06-03 21:45:03,589 | INFO     | ..............................
[2025-06-04 01:06:44] 2025-06-03 21:45:03,589 | INFO     | . Timing measurements:
[2025-06-04 01:06:44] 2025-06-03 21:45:03,590 | INFO     | . get job = 0 s
[2025-06-04 01:06:44] 2025-06-03 21:45:03,590 | INFO     | . initial setup = 2 s
[2025-06-04 01:06:44] 2025-06-03 21:45:03,590 | INFO     | . payload setup = 13 s
[2025-06-04 01:06:44] 2025-06-03 21:45:03,590 | INFO     | . stage-in = 0 s
[2025-06-04 01:06:44] 2025-06-03 21:45:03,590 | INFO     | . payload execution = 12988 s
[2025-06-04 01:06:44] 2025-06-03 21:45:03,590 | INFO     | . stage-out = 6 s
[2025-06-04 01:06:44] 2025-06-03 21:45:03,590 | INFO     | . log creation = 1 s
[2025-06-04 01:06:44] 2025-06-03 21:45:03,590 | INFO     | ..............................
[2025-06-04 01:06:44] 2025-06-03 21:45:03,795 | INFO     | 
[2025-06-04 01:06:44] 2025-06-03 21:45:03,795 | INFO     | job summary report
[2025-06-04 01:06:44] 2025-06-03 21:45:03,795 | INFO     | --------------------------------------------------
[2025-06-04 01:06:44] 2025-06-03 21:45:03,795 | INFO     | PanDA job id: 6677469018
[2025-06-04 01:06:44] 2025-06-03 21:45:03,795 | INFO     | task id: 45006595
[2025-06-04 01:06:44] 2025-06-03 21:45:03,796 | INFO     | errors: (none)
[2025-06-04 01:06:44] 2025-06-03 21:45:03,796 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 01:06:44] 2025-06-03 21:45:03,796 | INFO     | pilot state: finished 
[2025-06-04 01:06:44] 2025-06-03 21:45:03,796 | INFO     | transexitcode: 0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,796 | INFO     | exeerrorcode: 0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,796 | INFO     | exeerrordiag: 
[2025-06-04 01:06:44] 2025-06-03 21:45:03,796 | INFO     | exitcode: 0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,796 | INFO     | exitmsg: OK
[2025-06-04 01:06:44] 2025-06-03 21:45:03,796 | INFO     | cpuconsumptiontime: 49439 s
[2025-06-04 01:06:44] 2025-06-03 21:45:03,796 | INFO     | nevents: 400
[2025-06-04 01:06:44] 2025-06-03 21:45:03,797 | INFO     | neventsw: 0
[2025-06-04 01:06:44] 2025-06-03 21:45:03,797 | INFO     | pid: 14398
[2025-06-04 01:06:44] 2025-06-03 21:45:03,797 | INFO     | pgrp: 14398
[2025-06-04 01:06:44] 2025-06-03 21:45:03,797 | INFO     | corecount: 8
[2025-06-04 01:06:44] 2025-06-03 21:45:03,797 | INFO     | event service: False
[2025-06-04 01:06:44] 2025-06-03 21:45:03,797 | INFO     | sizes: {0: 2405183, 1: 2405211, 9: 2405417, 12: 2405445, 13006: 2434713, 13007: 2434712, 13015: 2443839, 13017: 2443895, 13117: 2444065}
[2025-06-04 01:06:44] 2025-06-03 21:45:03,797 | INFO     | --------------------------------------------------
[2025-06-04 01:06:44] 2025-06-03 21:45:03,797 | INFO     | 
[2025-06-04 01:06:44] 2025-06-03 21:45:03,797 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 01:06:44] 2025-06-03 21:45:04,117 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,118 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,118 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,118 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,118 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,118 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,118 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,119 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,119 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,119 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,119 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,119 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,119 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,119 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,119 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,119 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,120 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,120 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 01:06:44] 2025-06-03 21:45:04,120 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,120 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 01:06:44] 2025-06-03 21:45:04,120 | INFO     | job 6677469018 has completed (purged errors)
[2025-06-04 01:06:44] 2025-06-03 21:45:04,120 | INFO     | overall cleanup function is called
[2025-06-04 01:06:44] 2025-06-03 21:45:05,130 | INFO     | --- collectZombieJob: --- 10, [14398]
[2025-06-04 01:06:44] 2025-06-03 21:45:05,130 | INFO     | zombie collector waiting for pid 14398
[2025-06-04 01:06:44] 2025-06-03 21:45:05,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 01:06:44] 2025-06-03 21:45:05,130 | INFO     | collected zombie processes
[2025-06-04 01:06:44] 2025-06-03 21:45:05,131 | INFO     | will attempt to kill all subprocesses of pid=14398
[2025-06-04 01:06:44] 2025-06-03 21:45:05,265 | INFO     | process IDs to be killed: [14398] (in reverse order)
[2025-06-04 01:06:44] 2025-06-03 21:45:06,093 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 01:06:44] 2025-06-03 21:45:06,093 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 01:06:44] 2025-06-03 21:45:06,096 | INFO     | did not find any defunct processes belonging to 14398
[2025-06-04 01:06:44] 2025-06-03 21:45:06,106 | INFO     | did not find any defunct processes belonging to 14398
[2025-06-04 01:06:44] 2025-06-03 21:45:06,107 | INFO     | ready for new job
[2025-06-04 01:06:44] 2025-06-03 21:45:06,107 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 01:06:44] 2025-06-03 21:45:06,109 | INFO     | **************************************
[2025-06-04 01:06:44] 2025-06-03 21:45:06,109 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 01:06:44] 2025-06-03 21:45:06,109 | INFO     | **************************************
[2025-06-04 01:06:44] 2025-06-03 21:45:06,109 | INFO     | 
[2025-06-04 01:06:44] 2025-06-03 21:45:06,110 | INFO     | pilot is running in a VM
[2025-06-04 01:06:44] 2025-06-03 21:45:06,110 | INFO     | architecture information:
[2025-06-04 01:06:44] 2025-06-03 21:45:06,124 | INFO     | executing command: cat /etc/os-release
[2025-06-04 01:06:44] 2025-06-03 21:45:06,357 | INFO     | cat /etc/os-release:
[2025-06-04 01:06:44] NAME="CentOS Linux"
[2025-06-04 01:06:44] VERSION="7 (Core)"
[2025-06-04 01:06:44] ID="centos"
[2025-06-04 01:06:44] ID_LIKE="rhel fedora"
[2025-06-04 01:06:44] VERSION_ID="7"
[2025-06-04 01:06:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 01:06:44] ANSI_COLOR="0;31"
[2025-06-04 01:06:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 01:06:44] HOME_URL="https://www.centos.org/"
[2025-06-04 01:06:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 01:06:44] 
[2025-06-04 01:06:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 01:06:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 01:06:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 01:06:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 01:06:44] 
[2025-06-04 01:06:44] 2025-06-03 21:45:06,357 | INFO     | **************************************
[2025-06-04 01:06:44] 2025-06-03 21:45:06,861 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 01:06:44] 2025-06-03 21:45:06,955 | INFO     | sufficient remaining disk space (496684236800 B)
[2025-06-04 01:06:44] 2025-06-03 21:45:06,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 01:06:44] 2025-06-03 21:45:06,955 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 01:06:44] 2025-06-03 21:45:06,955 | INFO     | update_server=False
[2025-06-04 01:06:44] 2025-06-03 21:45:06,955 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 01:06:44] 2025-06-03 21:45:07,145 | INFO     | all data control threads have been joined
[2025-06-04 01:06:44] 2025-06-03 21:45:07,170 | INFO     | all job control threads have been joined
[2025-06-04 01:06:44] 2025-06-03 21:45:07,256 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 01:06:44] 2025-06-03 21:45:07,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 01:06:44] 2025-06-03 21:45:07,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 01:06:44] 2025-06-03 21:45:07,383 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 01:06:44] 2025-06-03 21:45:07,383 | INFO     | aborting loop
[2025-06-04 01:06:44] 2025-06-03 21:45:07,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 01:06:44] 2025-06-03 21:45:07,961 | INFO     | [job] retrieve thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:08,151 | INFO     | [data] control thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:08,176 | INFO     | [job] control thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:08,186 | INFO     | [job] validate thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:08,264 | INFO     | all payload control threads have been joined
[2025-06-04 01:06:44] 2025-06-03 21:45:08,389 | INFO     | [job] job monitor thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:08,699 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:08,727 | INFO     | [payload] failed_post thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:08,781 | INFO     | [data] copytool_in thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:08,808 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 01:06:44] 2025-06-03 21:45:08,890 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:08,993 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:09,110 | INFO     | [payload] validate_post thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:09,189 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:09,270 | INFO     | [payload] control thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:09,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 01:06:44] 2025-06-03 21:45:09,814 | INFO     | [job] queue monitor thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:09,969 | INFO     | [data] copytool_out thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:13,731 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 01:06:44] 2025-06-03 21:45:15,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139903515301696)>', '<ExcThread(monitor, started 139902838626048)>']
[2025-06-04 01:06:44] 2025-06-03 21:45:16,309 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 01:06:44] 2025-06-03 21:45:16,309 | INFO     | [monitor] control thread has ended
[2025-06-04 01:06:44] 2025-06-03 21:45:20,359 | INFO     | all workflow threads have been joined
[2025-06-04 01:06:44] 2025-06-03 21:45:20,359 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 01:06:44] 2025-06-03 21:45:20,359 | INFO     | traces error code: 0
[2025-06-04 01:06:44] 2025-06-03 21:45:20,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 01:06:44] 2025-06-03 21:45:20,736 [wrapper] ==== pilot stdout END ====
[2025-06-04 01:06:44] 2025-06-03 21:45:20,834 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 01:06:44] 2025-06-03 21:45:20,934 [wrapper] pilotpid: 5834
[2025-06-04 01:06:44] 2025-06-03 21:45:21,028 [wrapper] Pilot exit status: 0
[2025-06-04 01:06:44] 2025-06-03 21:45:21,364 [wrapper] pandaids: 6677469018
[2025-06-04 01:06:44] 2025-06-03 21:45:22,106 [wrapper] cleanup supervisor_pilot  5554 5835
[2025-06-04 01:06:44] 2025-06-03 21:45:22,186 [wrapper] Test setup, not cleaning
[2025-06-04 01:06:44] 2025-06-03 21:45:22,223 [wrapper] apfmon messages muted
[2025-06-04 01:06:44] 2025-06-03 21:45:22,227 [wrapper] ==== wrapper stdout END ====
[2025-06-04 01:06:44] 2025-06-03 21:45:22,232 [wrapper] ==== wrapper stderr END ====
[2025-06-04 01:06:44]  *** Error codes and diagnostics ***
[2025-06-04 01:06:44]     "exeErrorCode": 0,
[2025-06-04 01:06:44]     "exeErrorDiag": "",
[2025-06-04 01:06:44]     "pilotErrorCode": 0,
[2025-06-04 01:06:44]     "pilotErrorDiag": "",
[2025-06-04 01:06:44]  *** Listing of results directory ***
[2025-06-04 01:06:44] total 387924
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc    495897 Jun  3 06:37 pilot3.tar.gz
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc      5111 Jun  3 06:49 queuedata.json
[2025-06-04 01:06:44] -rwx------. 1 boinc boinc     37140 Jun  3 06:51 runpilot2-wrapper.sh
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc       100 Jun  3 20:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 01:06:44] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 20:05 run_atlas
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc       105 Jun  3 20:05 job.xml
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc      6391 Jun  3 20:05 init_data.xml
[2025-06-04 01:06:44] -rw-r--r--. 2 boinc boinc 213362898 Jun  3 20:05 EVNT.45006593._000793.pool.root.1
[2025-06-04 01:06:44] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:05 start_atlas.sh
[2025-06-04 01:06:44] drwxrwx--x. 2 boinc boinc        68 Jun  3 20:05 shared
[2025-06-04 01:06:44] -rw-r--r--. 2 boinc boinc    508881 Jun  3 20:05 input.tar.gz
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc         0 Jun  3 20:05 boinc_lockfile
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc      2524 Jun  3 20:05 pandaJob.out
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc    985078 Jun  3 20:06 agis_schedconf.cvmfs.json
[2025-06-04 01:06:44] drwx------. 4 boinc boinc      4096 Jun  3 20:06 pilot3
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc 177037164 Jun  3 23:42 HITS.45006595._019810.pool.root.1
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc       531 Jun  3 23:42 boinc_task_state.xml
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc      1018 Jun  3 23:43 memory_monitor_summary.json
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc   1603667 Jun  3 23:43 agis_ddmendpoints.agis.ALL.json
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc    368614 Jun  3 23:43 log.45006595._019810.job.log.tgz.1
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc        95 Jun  3 23:44 pilot_heartbeat.json
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc      7693 Jun  3 23:45 heartbeat.json
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc      4417 Jun  3 23:45 pilotlog.txt
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc   1140175 Jun  3 23:45 log.45006595._019810.job.log.1
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc       357 Jun  3 23:45 output.list
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc       620 Jun  3 23:45 runtime_log
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc   1525760 Jun  3 23:45 result.tar.gz
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc       656 Jun  3 23:45 UerNDmMnYg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDml1hKDmHGtbbn.diag
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc      8673 Jun  3 23:45 runtime_log.err
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc      8192 Jun  4 01:06 boinc_mmap_file
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc        28 Jun  4 01:06 wrapper_checkpoint.txt
[2025-06-04 01:06:44] -rw-r--r--. 1 boinc boinc     20486 Jun  4 01:06 stderr.txt
[2025-06-04 01:06:44] HITS file was successfully produced:
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc 177037164 Jun  3 23:42 shared/HITS.pool.root.1
[2025-06-04 01:06:44]  *** Contents of shared directory: ***
[2025-06-04 01:06:44] total 383260
[2025-06-04 01:06:44] -rw-r--r--. 2 boinc boinc 213362898 Jun  3 20:05 ATLAS.root_0
[2025-06-04 01:06:44] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:05 start_atlas.sh
[2025-06-04 01:06:44] -rw-r--r--. 2 boinc boinc    508881 Jun  3 20:05 input.tar.gz
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc 177037164 Jun  3 23:42 HITS.pool.root.1
[2025-06-04 01:06:44] -rw-------. 1 boinc boinc   1525760 Jun  3 23:45 result.tar.gz
01:06:46 (1854): run_atlas exited; CPU time 49602.587735
01:06:46 (1854): called boinc_finish(0)

</stderr_txt>
]]>

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