Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:31:23 (18597): wrapper (7.7.26015): starting
20:31:23 (18597): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 20:31:23] Arguments: --nthreads 8
[2025-06-03 20:31:23] Threads: 8
[2025-06-03 20:31:23] Checking for CVMFS
[2025-06-03 20:31:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:31:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:31:24] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:31:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:31:24] 2.11.2.0 14372 32119 101104 146750 3 262 24231109 25165824 2852 130560 0 16458537 99.825 18898157 2181 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 20:31:24] CVMFS is ok
[2025-06-03 20:31:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:31:24] Checking for apptainer binary...
[2025-06-03 20:31:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:31:24] Running /usr/bin/apptainer --version
[2025-06-03 20:31:25] apptainer version 1.3.2-1.el7
[2025-06-03 20:31:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:31:27] cg-vwn440.simple-grid.lan
[2025-06-03 20:31:27] apptainer works
[2025-06-03 20:31:27] Set ATHENA_PROC_NUMBER=8
[2025-06-03 20:31:27] Set ATHENA_CORE_NUMBER=8
[2025-06-03 20:31:27] Starting ATLAS job with PandaID=6677473671
[2025-06-03 20:31:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/31 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 00:53:23]  *** The last 200 lines of the pilot log: ***
[2025-06-04 00:53:23] 2025-06-03 22:30:05,592 | INFO     | using path: /var/lib/boinc/slots/31/PanDA_Pilot-6677473671/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 00:53:23] 2025-06-03 22:30:05,592 | INFO     | extracted standard info from prmon json
[2025-06-04 00:53:23] 2025-06-03 22:30:05,592 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 00:53:23] 2025-06-03 22:30:05,593 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 00:53:23] 2025-06-03 22:30:05,593 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 00:53:23] 2025-06-03 22:30:05,593 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 00:53:23] 2025-06-03 22:30:05,598 | INFO     | fitting pss+swap vs Time
[2025-06-04 00:53:23] 2025-06-03 22:30:05,599 | INFO     | sum of square deviations: 3822136780.0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,601 | INFO     | sum of deviations: -25513225295.0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,601 | INFO     | mean x: 1748982640.0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,601 | INFO     | mean y: 2507417.1385281384
[2025-06-04 00:53:23] 2025-06-03 22:30:05,601 | INFO     | -- intersect: 11677178079.072266
[2025-06-04 00:53:23] 2025-06-03 22:30:05,601 | INFO     | intersect: 11677178079.072266
[2025-06-04 00:53:23] 2025-06-03 22:30:05,602 | INFO     | chi2: 2.7386471184427057
[2025-06-04 00:53:23] 2025-06-03 22:30:05,602 | INFO     | sum of square deviations: 3579276412.5
[2025-06-04 00:53:23] 2025-06-03 22:30:05,604 | INFO     | sum of deviations: -8854481169.000008
[2025-06-04 00:53:23] 2025-06-03 22:30:05,604 | INFO     | mean x: 1748982487.5
[2025-06-04 00:53:23] 2025-06-03 22:30:05,604 | INFO     | mean y: 2517703.0707964604
[2025-06-04 00:53:23] 2025-06-03 22:30:05,604 | INFO     | -- intersect: 4329183407.456246
[2025-06-04 00:53:23] 2025-06-03 22:30:05,604 | INFO     | intersect: 4329183407.456246
[2025-06-04 00:53:23] 2025-06-03 22:30:05,605 | INFO     | chi2: 1.90933376113419
[2025-06-04 00:53:23] 2025-06-03 22:30:05,605 | INFO     | current chi2=1.90933376113419 (change=30.281862592800685 %)
[2025-06-04 00:53:23] 2025-06-03 22:30:05,605 | INFO     | sum of square deviations: 3346927870.0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,607 | INFO     | sum of deviations: -8330457557.999993
[2025-06-04 00:53:23] 2025-06-03 22:30:05,607 | INFO     | mean x: 1748982335.0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,607 | INFO     | mean y: 2518047.0904977378
[2025-06-04 00:53:23] 2025-06-03 22:30:05,608 | INFO     | -- intersect: 4355711087.790604
[2025-06-04 00:53:23] 2025-06-03 22:30:05,608 | INFO     | intersect: 4355711087.790604
[2025-06-04 00:53:23] 2025-06-03 22:30:05,608 | INFO     | chi2: 1.9092358766486721
[2025-06-04 00:53:23] 2025-06-03 22:30:05,608 | INFO     | current chi2=1.9092358766486721 (change=0.005126630425253988 %)
[2025-06-04 00:53:23] 2025-06-03 22:30:05,608 | INFO     | right removable region: 220
[2025-06-04 00:53:23] 2025-06-03 22:30:05,609 | INFO     | sum of square deviations: 3579276412.5
[2025-06-04 00:53:23] 2025-06-03 22:30:05,610 | INFO     | sum of deviations: -65752298970.5
[2025-06-04 00:53:23] 2025-06-03 22:30:05,611 | INFO     | mean x: 1748982792.5
[2025-06-04 00:53:23] 2025-06-03 22:30:05,611 | INFO     | mean y: 2532476.278761062
[2025-06-04 00:53:23] 2025-06-03 22:30:05,611 | INFO     | -- intersect: 32131830751.512196
[2025-06-04 00:53:23] 2025-06-03 22:30:05,611 | INFO     | intersect: 32131830751.512196
[2025-06-04 00:53:23] 2025-06-03 22:30:05,611 | INFO     | chi2: 1.0877764406224737
[2025-06-04 00:53:23] 2025-06-03 22:30:05,612 | INFO     | current chi2=1.0877764406224737 (change=60.28051831515179 %)
[2025-06-04 00:53:23] 2025-06-03 22:30:05,612 | INFO     | sum of square deviations: 3346927870.0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,614 | INFO     | sum of deviations: -67898231177.000015
[2025-06-04 00:53:23] 2025-06-03 22:30:05,614 | INFO     | mean x: 1748982945.0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,614 | INFO     | mean y: 2533862.787330317
[2025-06-04 00:53:23] 2025-06-03 22:30:05,614 | INFO     | -- intersect: 35483683423.456024
[2025-06-04 00:53:23] 2025-06-03 22:30:05,614 | INFO     | intersect: 35483683423.456024
[2025-06-04 00:53:23] 2025-06-03 22:30:05,615 | INFO     | chi2: 1.057920021358692
[2025-06-04 00:53:23] 2025-06-03 22:30:05,615 | INFO     | current chi2=1.057920021358692 (change=2.7447201602101843 %)
[2025-06-04 00:53:23] 2025-06-03 22:30:05,615 | INFO     | left removable region: 20
[2025-06-04 00:53:23] 2025-06-03 22:30:05,615 | INFO     | sum of square deviations: 2480604650.0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,617 | INFO     | sum of deviations: -37332421052.49999
[2025-06-04 00:53:23] 2025-06-03 22:30:05,617 | INFO     | mean x: 1748982914.5
[2025-06-04 00:53:23] 2025-06-03 22:30:05,617 | INFO     | mean y: 2537043.675
[2025-06-04 00:53:23] 2025-06-03 22:30:05,617 | INFO     | -- intersect: 26324251218.37938
[2025-06-04 00:53:23] 2025-06-03 22:30:05,617 | INFO     | intersect: 26324251218.37938
[2025-06-04 00:53:23] 2025-06-03 22:30:05,618 | INFO     | chi2: 0.18389933689643892
[2025-06-04 00:53:23] 2025-06-03 22:30:05,618 | INFO     | -- intersect: 26324251218.37938
[2025-06-04 00:53:23] 2025-06-03 22:30:05,618 | INFO     | current memory leak: -15.05 B/s (using 200 data points, chi2=0.18)
[2025-06-04 00:53:23] 2025-06-03 22:30:05,619 | INFO     | ..............................
[2025-06-04 00:53:23] 2025-06-03 22:30:05,619 | INFO     | . Timing measurements:
[2025-06-04 00:53:23] 2025-06-03 22:30:05,619 | INFO     | . get job = 0 s
[2025-06-04 00:53:23] 2025-06-03 22:30:05,619 | INFO     | . initial setup = 2 s
[2025-06-04 00:53:23] 2025-06-03 22:30:05,619 | INFO     | . payload setup = 21 s
[2025-06-04 00:53:23] 2025-06-03 22:30:05,619 | INFO     | . stage-in = 0 s
[2025-06-04 00:53:23] 2025-06-03 22:30:05,619 | INFO     | . payload execution = 14122 s
[2025-06-04 00:53:23] 2025-06-03 22:30:05,619 | INFO     | . stage-out = 3 s
[2025-06-04 00:53:23] 2025-06-03 22:30:05,619 | INFO     | . log creation = 1 s
[2025-06-04 00:53:23] 2025-06-03 22:30:05,620 | INFO     | ..............................
[2025-06-04 00:53:23] 2025-06-03 22:30:05,767 | INFO     | 
[2025-06-04 00:53:23] 2025-06-03 22:30:05,768 | INFO     | job summary report
[2025-06-04 00:53:23] 2025-06-03 22:30:05,768 | INFO     | --------------------------------------------------
[2025-06-04 00:53:23] 2025-06-03 22:30:05,768 | INFO     | PanDA job id: 6677473671
[2025-06-04 00:53:23] 2025-06-03 22:30:05,768 | INFO     | task id: 45006595
[2025-06-04 00:53:23] 2025-06-03 22:30:05,768 | INFO     | errors: (none)
[2025-06-04 00:53:23] 2025-06-03 22:30:05,768 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 00:53:23] 2025-06-03 22:30:05,768 | INFO     | pilot state: finished 
[2025-06-04 00:53:23] 2025-06-03 22:30:05,768 | INFO     | transexitcode: 0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,768 | INFO     | exeerrorcode: 0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,768 | INFO     | exeerrordiag: 
[2025-06-04 00:53:23] 2025-06-03 22:30:05,768 | INFO     | exitcode: 0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,769 | INFO     | exitmsg: OK
[2025-06-04 00:53:23] 2025-06-03 22:30:05,769 | INFO     | cpuconsumptiontime: 52639 s
[2025-06-04 00:53:23] 2025-06-03 22:30:05,769 | INFO     | nevents: 400
[2025-06-04 00:53:23] 2025-06-03 22:30:05,769 | INFO     | neventsw: 0
[2025-06-04 00:53:23] 2025-06-03 22:30:05,769 | INFO     | pid: 28869
[2025-06-04 00:53:23] 2025-06-03 22:30:05,769 | INFO     | pgrp: 28869
[2025-06-04 00:53:23] 2025-06-03 22:30:05,769 | INFO     | corecount: 8
[2025-06-04 00:53:23] 2025-06-03 22:30:05,769 | INFO     | event service: False
[2025-06-04 00:53:23] 2025-06-03 22:30:05,769 | INFO     | sizes: {0: 2405012, 1: 2405211, 12: 2405211, 18: 2405445, 23: 2405473, 14147: 2435297, 14148: 2435424, 14153: 2444479, 14255: 2444593}
[2025-06-04 00:53:23] 2025-06-03 22:30:05,769 | INFO     | --------------------------------------------------
[2025-06-04 00:53:23] 2025-06-03 22:30:05,769 | INFO     | 
[2025-06-04 00:53:23] 2025-06-03 22:30:05,770 | INFO     | executing command: ls -lF /var/lib/boinc/slots/31
[2025-06-04 00:53:23] 2025-06-03 22:30:06,258 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,258 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,258 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,258 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,258 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,258 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,258 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,259 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,259 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,259 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,259 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,259 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,259 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,259 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,259 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,259 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,259 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,259 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 00:53:23] 2025-06-03 22:30:06,260 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,260 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 00:53:23] 2025-06-03 22:30:06,260 | INFO     | job 6677473671 has completed (purged errors)
[2025-06-04 00:53:23] 2025-06-03 22:30:06,260 | INFO     | overall cleanup function is called
[2025-06-04 00:53:23] 2025-06-03 22:30:07,269 | INFO     | --- collectZombieJob: --- 10, [28869]
[2025-06-04 00:53:23] 2025-06-03 22:30:07,269 | INFO     | zombie collector waiting for pid 28869
[2025-06-04 00:53:23] 2025-06-03 22:30:07,270 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 00:53:23] 2025-06-03 22:30:07,270 | INFO     | collected zombie processes
[2025-06-04 00:53:23] 2025-06-03 22:30:07,270 | INFO     | will attempt to kill all subprocesses of pid=28869
[2025-06-04 00:53:23] 2025-06-03 22:30:07,384 | INFO     | process IDs to be killed: [28869] (in reverse order)
[2025-06-04 00:53:23] 2025-06-03 22:30:08,309 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 00:53:23] 2025-06-03 22:30:08,309 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 00:53:23] 2025-06-03 22:30:08,312 | INFO     | did not find any defunct processes belonging to 28869
[2025-06-04 00:53:23] 2025-06-03 22:30:08,315 | INFO     | did not find any defunct processes belonging to 28869
[2025-06-04 00:53:23] 2025-06-03 22:30:08,316 | INFO     | ready for new job
[2025-06-04 00:53:23] 2025-06-03 22:30:08,316 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 00:53:23] 2025-06-03 22:30:08,321 | INFO     | **************************************
[2025-06-04 00:53:23] 2025-06-03 22:30:08,321 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 00:53:23] 2025-06-03 22:30:08,321 | INFO     | **************************************
[2025-06-04 00:53:23] 2025-06-03 22:30:08,321 | INFO     | 
[2025-06-04 00:53:23] 2025-06-03 22:30:08,322 | INFO     | pilot is running in a VM
[2025-06-04 00:53:23] 2025-06-03 22:30:08,322 | INFO     | architecture information:
[2025-06-04 00:53:23] 2025-06-03 22:30:08,338 | INFO     | executing command: cat /etc/os-release
[2025-06-04 00:53:23] 2025-06-03 22:30:08,750 | INFO     | cat /etc/os-release:
[2025-06-04 00:53:23] NAME="CentOS Linux"
[2025-06-04 00:53:23] VERSION="7 (Core)"
[2025-06-04 00:53:23] ID="centos"
[2025-06-04 00:53:23] ID_LIKE="rhel fedora"
[2025-06-04 00:53:23] VERSION_ID="7"
[2025-06-04 00:53:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 00:53:23] ANSI_COLOR="0;31"
[2025-06-04 00:53:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 00:53:23] HOME_URL="https://www.centos.org/"
[2025-06-04 00:53:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 00:53:23] 
[2025-06-04 00:53:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 00:53:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 00:53:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 00:53:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 00:53:23] 
[2025-06-04 00:53:23] 2025-06-03 22:30:08,750 | INFO     | **************************************
[2025-06-04 00:53:23] 2025-06-03 22:30:09,252 | INFO     | executing command: df -mP /var/lib/boinc/slots/31
[2025-06-04 00:53:23] 2025-06-03 22:30:09,574 | INFO     | sufficient remaining disk space (496800628736 B)
[2025-06-04 00:53:23] 2025-06-03 22:30:09,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 00:53:23] 2025-06-03 22:30:09,574 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 00:53:23] 2025-06-03 22:30:09,575 | INFO     | update_server=False
[2025-06-04 00:53:23] 2025-06-03 22:30:09,575 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 00:53:23] 2025-06-03 22:30:09,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 00:53:23] 2025-06-03 22:30:09,577 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:53:23] 2025-06-03 22:30:09,578 | INFO     | aborting loop
[2025-06-04 00:53:23] 2025-06-03 22:30:09,729 | INFO     | all payload control threads have been joined
[2025-06-04 00:53:23] 2025-06-03 22:30:09,761 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 00:53:23] 2025-06-03 22:30:10,295 | INFO     | all data control threads have been joined
[2025-06-04 00:53:23] 2025-06-03 22:30:10,485 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 00:53:23] 2025-06-03 22:30:10,486 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 00:53:23] 2025-06-03 22:30:10,486 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 00:53:23] 2025-06-03 22:30:10,580 | INFO     | [job] retrieve thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:10,583 | INFO     | [job] job monitor thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:10,604 | INFO     | all job control threads have been joined
[2025-06-04 00:53:23] 2025-06-03 22:30:10,726 | INFO     | [data] copytool_in thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:10,735 | INFO     | [payload] control thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:10,783 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:53:23] 2025-06-03 22:30:10,953 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:11,002 | INFO     | [payload] failed_post thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:11,287 | INFO     | [payload] validate_post thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:11,302 | INFO     | [data] control thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:11,461 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:11,525 | INFO     | [job] validate thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:11,609 | INFO     | [job] control thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:11,677 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:11,768 | INFO     | [data] copytool_out thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:11,789 | INFO     | [job] queue monitor thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:12,010 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:13,584 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 00:53:23] 2025-06-03 22:30:14,357 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140617064019776)>', '<ExcThread(monitor, started 140616348460800)>']
[2025-06-04 00:53:23] 2025-06-03 22:30:14,509 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 00:53:23] 2025-06-03 22:30:14,510 | INFO     | [monitor] control thread has ended
[2025-06-04 00:53:23] 2025-06-03 22:30:19,383 | INFO     | all workflow threads have been joined
[2025-06-04 00:53:23] 2025-06-03 22:30:19,384 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 00:53:23] 2025-06-03 22:30:19,384 | INFO     | traces error code: 0
[2025-06-04 00:53:23] 2025-06-03 22:30:19,384 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 00:53:23] 2025-06-03 22:30:19,739 [wrapper] ==== pilot stdout END ====
[2025-06-04 00:53:23] 2025-06-03 22:30:19,830 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 00:53:23] 2025-06-03 22:30:19,887 [wrapper] pilotpid: 22307
[2025-06-04 00:53:23] 2025-06-03 22:30:19,953 [wrapper] Pilot exit status: 0
[2025-06-04 00:53:23] 2025-06-03 22:30:20,430 [wrapper] pandaids: 6677473671
[2025-06-04 00:53:23] 2025-06-03 22:30:20,797 [wrapper] cleanup supervisor_pilot  5590 22308
[2025-06-04 00:53:23] 2025-06-03 22:30:20,900 [wrapper] Test setup, not cleaning
[2025-06-04 00:53:23] 2025-06-03 22:30:21,015 [wrapper] apfmon messages muted
[2025-06-04 00:53:23] 2025-06-03 22:30:21,126 [wrapper] ==== wrapper stdout END ====
[2025-06-04 00:53:23] 2025-06-03 22:30:21,223 [wrapper] ==== wrapper stderr END ====
[2025-06-04 00:53:23]  *** Error codes and diagnostics ***
[2025-06-04 00:53:23]     "exeErrorCode": 0,
[2025-06-04 00:53:23]     "exeErrorDiag": "",
[2025-06-04 00:53:23]     "pilotErrorCode": 0,
[2025-06-04 00:53:23]     "pilotErrorDiag": "",
[2025-06-04 00:53:23]  *** Listing of results directory ***
[2025-06-04 00:53:23] total 394836
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc    495897 Jun  3 08:25 pilot3.tar.gz
[2025-06-04 00:53:23] -rwx------. 1 boinc boinc     37140 Jun  3 08:29 runpilot2-wrapper.sh
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc      5111 Jun  3 08:29 queuedata.json
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc       100 Jun  3 20:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 00:53:23] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 20:31 run_atlas
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc       105 Jun  3 20:31 job.xml
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc      6393 Jun  3 20:31 init_data.xml
[2025-06-04 00:53:23] -rw-r--r--. 2 boinc boinc 213980195 Jun  3 20:31 EVNT.45006593._000889.pool.root.1
[2025-06-04 00:53:23] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:31 start_atlas.sh
[2025-06-04 00:53:23] drwxrwx--x. 2 boinc boinc        68 Jun  3 20:31 shared
[2025-06-04 00:53:23] -rw-r--r--. 2 boinc boinc    508872 Jun  3 20:31 input.tar.gz
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc         0 Jun  3 20:31 boinc_lockfile
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc      2524 Jun  3 20:31 pandaJob.out
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc    985078 Jun  3 20:31 agis_schedconf.cvmfs.json
[2025-06-04 00:53:23] drwx------. 4 boinc boinc      4096 Jun  3 20:31 pilot3
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc 183248650 Jun  4 00:27 HITS.45006595._022227.pool.root.1
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc       531 Jun  4 00:27 boinc_task_state.xml
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc      1015 Jun  4 00:28 memory_monitor_summary.json
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc   1603667 Jun  4 00:28 agis_ddmendpoints.agis.ALL.json
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc    397872 Jun  4 00:28 log.45006595._022227.job.log.tgz.1
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc        95 Jun  4 00:29 pilot_heartbeat.json
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc      7692 Jun  4 00:30 heartbeat.json
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc      4417 Jun  4 00:30 pilotlog.txt
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc   1228175 Jun  4 00:30 log.45006595._022227.job.log.1
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc       357 Jun  4 00:30 output.list
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc       620 Jun  4 00:30 runtime_log
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc   1648640 Jun  4 00:30 result.tar.gz
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc       656 Jun  4 00:30 SZ5LDmOKag7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWRiKDm9IvTln.diag
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc      8673 Jun  4 00:30 runtime_log.err
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc      8192 Jun  4 00:53 boinc_mmap_file
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc        28 Jun  4 00:53 wrapper_checkpoint.txt
[2025-06-04 00:53:23] -rw-r--r--. 1 boinc boinc     20499 Jun  4 00:53 stderr.txt
[2025-06-04 00:53:23] HITS file was successfully produced:
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc 183248650 Jun  4 00:27 shared/HITS.pool.root.1
[2025-06-04 00:53:23]  *** Contents of shared directory: ***
[2025-06-04 00:53:23] total 390052
[2025-06-04 00:53:23] -rw-r--r--. 2 boinc boinc 213980195 Jun  3 20:31 ATLAS.root_0
[2025-06-04 00:53:23] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:31 start_atlas.sh
[2025-06-04 00:53:23] -rw-r--r--. 2 boinc boinc    508872 Jun  3 20:31 input.tar.gz
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc 183248650 Jun  4 00:27 HITS.pool.root.1
[2025-06-04 00:53:23] -rw-------. 1 boinc boinc   1648640 Jun  4 00:30 result.tar.gz
00:53:25 (18597): run_atlas exited; CPU time 52826.526624
00:53:25 (18597): called boinc_finish(0)

</stderr_txt>
]]>

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