Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
04:55:16 (1494026): wrapper (7.7.26015): starting
04:55:16 (1494026): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 04:55:16] Arguments: --nthreads 12
[2025-06-03 04:55:16] Threads: 12
[2025-06-03 04:55:16] Checking for CVMFS
[2025-06-03 04:55:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 04:55:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 04:55:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 04:55:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 04:55:17] 2.8.1.0 1422966 112 50208 146735 3 56 3884666 4096000 0 130560 0 139446 99.998 2667 569 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-03 04:55:17] CVMFS is ok
[2025-06-03 04:55:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 04:55:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 04:55:17] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-03 04:55:17] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-03 04:55:17] Further information can be found at the LHC@home message board.
[2025-06-03 04:55:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 04:55:17] Checking for apptainer binary...
[2025-06-03 04:55:17] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-06-03 04:55:17] apptainer is not installed, using version from CVMFS
[2025-06-03 04:55:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 04:55:18] farmville.blisteringsheep.pec
[2025-06-03 04:55:18] apptainer works
[2025-06-03 04:55:18] Set ATHENA_PROC_NUMBER=12
[2025-06-03 04:55:18] Set ATHENA_CORE_NUMBER=12
[2025-06-03 04:55:18] Starting ATLAS job with PandaID=6677472031
[2025-06-03 04:55:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/44 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 05:49:50]  *** The last 200 lines of the pilot log: ***
[2025-06-03 05:49:50]  replicas=None
[2025-06-03 05:49:50]  scope=mc23_13p6TeV
[2025-06-03 05:49:50]  status=None
[2025-06-03 05:49:50]  status_code=0
[2025-06-03 05:49:50]  storage_token=
[2025-06-03 05:49:50]  surl=/var/lib/boinc/slots/44/PanDA_Pilot-6677472031/log.45006595._021388.job.log.tgz.1
[2025-06-03 05:49:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7c/6a/log.45006595._021388.job.log.tgz.1
[2025-06-03 05:49:50]  workdir=None
[2025-06-03 05:49:50] ]
[2025-06-03 05:49:50] 2025-06-03 09:49:16,402 | INFO     | transferring file log.45006595._021388.job.log.tgz.1 from /var/lib/boinc/slots/44/PanDA_Pilot-6677472031/log.45006595._021388.job.log.tgz.1 to /var/lib/boinc/slots
[2025-06-03 05:49:50] 2025-06-03 09:49:16,403 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/44/PanDA_Pilot-6677472031/log.45006595._021388.job.log.tgz.1 /var/lib/boinc/slots/44/log.45006595._021388.j
[2025-06-03 05:49:50] 2025-06-03 09:49:16,421 | INFO     | adding to output.list: log.45006595._021388.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7c/6a/log.45006595._021388.job.log.tg
[2025-06-03 05:49:50] 2025-06-03 09:49:16,422 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 05:49:50] 2025-06-03 09:49:16,422 | INFO     | summary of transferred files:
[2025-06-03 05:49:50] 2025-06-03 09:49:16,422 | INFO     |  -- lfn=log.45006595._021388.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 05:49:50] 2025-06-03 09:49:16,422 | INFO     | stage-out finished correctly
[2025-06-03 05:49:50] 2025-06-03 09:49:19,462 | WARNING  | process 1504745 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 05:49:50] 2025-06-03 09:49:19,463 | INFO     | using path: /var/lib/boinc/slots/44/PanDA_Pilot-6677472031/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 05:49:50] 2025-06-03 09:49:19,704 | INFO     | number of running child processes to parent process 1504745: 1
[2025-06-03 05:49:50] 2025-06-03 09:49:19,705 | INFO     | maximum number of monitored processes: 6
[2025-06-03 05:49:50] 2025-06-03 09:49:19,884 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 05:49:50] 2025-06-03 09:49:20,108 | INFO     | job 6677472031 has state=finished
[2025-06-03 05:49:50] 2025-06-03 09:49:20,108 | INFO     | preparing for final server update for job 6677472031 in state='finished'
[2025-06-03 05:49:50] 2025-06-03 09:49:20,109 | INFO     | this job has now completed (state=finished)
[2025-06-03 05:49:50] 2025-06-03 09:49:20,109 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 05:49:50] 2025-06-03 09:49:20,109 | INFO     | log transfer has been attempted: DONE
[2025-06-03 05:49:50] 2025-06-03 09:49:20,109 | INFO     | job 6677472031 has finished - writing final server update
[2025-06-03 05:49:50] 2025-06-03 09:49:20,110 | INFO     | total number of processed events: 400 (read)
[2025-06-03 05:49:50] 2025-06-03 09:49:20,112 | INFO     | executing command: lscpu
[2025-06-03 05:49:50] 2025-06-03 09:49:20,153 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 05:49:50] 2025-06-03 09:49:22,208 | INFO     | monitor loop #242: job 0:6677472031 is in state 'finished'
[2025-06-03 05:49:50] 2025-06-03 09:49:22,208 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:49:50] 2025-06-03 09:49:24,710 | INFO     | monitor loop #243: job 0:6677472031 is in state 'finished'
[2025-06-03 05:49:50] 2025-06-03 09:49:24,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:49:50] 2025-06-03 09:49:27,213 | INFO     | monitor loop #244: job 0:6677472031 is in state 'finished'
[2025-06-03 05:49:50] 2025-06-03 09:49:27,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:49:50] 2025-06-03 09:49:29,717 | INFO     | monitor loop #245: job 0:6677472031 is in state 'finished'
[2025-06-03 05:49:50] 2025-06-03 09:49:29,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:49:50] 2025-06-03 09:49:30,946 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 05:49:50] 2025-06-03 09:49:30,946 | INFO     | using path: /var/lib/boinc/slots/44/PanDA_Pilot-6677472031/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 05:49:50] 2025-06-03 09:49:30,947 | INFO     | extracted standard info from prmon json
[2025-06-03 05:49:50] 2025-06-03 09:49:30,947 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 05:49:50] 2025-06-03 09:49:30,947 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 05:49:50] 2025-06-03 09:49:30,948 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 05:49:50] 2025-06-03 09:49:30,948 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 05:49:50] 2025-06-03 09:49:30,949 | INFO     | fitting pss+swap vs Time
[2025-06-03 05:49:50] 2025-06-03 09:49:30,950 | INFO     | sum of square deviations: 30168007.5
[2025-06-03 05:49:50] 2025-06-03 09:49:30,950 | INFO     | sum of deviations: -3810030476.0
[2025-06-03 05:49:50] 2025-06-03 09:49:30,950 | INFO     | mean x: 1748942631.5
[2025-06-03 05:49:50] 2025-06-03 09:49:30,950 | INFO     | mean y: 2826576.652173913
[2025-06-03 05:49:50] 2025-06-03 09:49:30,950 | INFO     | -- intersect: 220883331422.41095
[2025-06-03 05:49:50] 2025-06-03 09:49:30,950 | INFO     | intersect: 220883331422.41095
[2025-06-03 05:49:50] 2025-06-03 09:49:30,951 | INFO     | chi2: 0.027687340902717808
[2025-06-03 05:49:50] 2025-06-03 09:49:30,951 | INFO     | -- intersect: 220883331422.41095
[2025-06-03 05:49:50] 2025-06-03 09:49:30,951 | INFO     | current memory leak: -126.29 B/s (using 46 data points, chi2=0.03)
[2025-06-03 05:49:50] 2025-06-03 09:49:30,951 | INFO     | ..............................
[2025-06-03 05:49:50] 2025-06-03 09:49:30,951 | INFO     | . Timing measurements:
[2025-06-03 05:49:50] 2025-06-03 09:49:30,952 | INFO     | . get job = 0 s
[2025-06-03 05:49:50] 2025-06-03 09:49:30,952 | INFO     | . initial setup = 3 s
[2025-06-03 05:49:50] 2025-06-03 09:49:30,952 | INFO     | . payload setup = 6 s
[2025-06-03 05:49:50] 2025-06-03 09:49:30,952 | INFO     | . stage-in = 0 s
[2025-06-03 05:49:50] 2025-06-03 09:49:30,952 | INFO     | . payload execution = 3201 s
[2025-06-03 05:49:50] 2025-06-03 09:49:30,952 | INFO     | . stage-out = 0 s
[2025-06-03 05:49:50] 2025-06-03 09:49:30,952 | INFO     | . log creation = 0 s
[2025-06-03 05:49:50] 2025-06-03 09:49:30,952 | INFO     | ..............................
[2025-06-03 05:49:50] 2025-06-03 09:49:31,185 | INFO     | 
[2025-06-03 05:49:50] 2025-06-03 09:49:31,185 | INFO     | job summary report
[2025-06-03 05:49:50] 2025-06-03 09:49:31,185 | INFO     | --------------------------------------------------
[2025-06-03 05:49:50] 2025-06-03 09:49:31,185 | INFO     | PanDA job id: 6677472031
[2025-06-03 05:49:50] 2025-06-03 09:49:31,185 | INFO     | task id: 45006595
[2025-06-03 05:49:50] 2025-06-03 09:49:31,185 | INFO     | errors: (none)
[2025-06-03 05:49:50] 2025-06-03 09:49:31,186 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 05:49:50] 2025-06-03 09:49:31,186 | INFO     | pilot state: finished 
[2025-06-03 05:49:50] 2025-06-03 09:49:31,186 | INFO     | transexitcode: 0
[2025-06-03 05:49:50] 2025-06-03 09:49:31,186 | INFO     | exeerrorcode: 0
[2025-06-03 05:49:50] 2025-06-03 09:49:31,186 | INFO     | exeerrordiag: 
[2025-06-03 05:49:50] 2025-06-03 09:49:31,186 | INFO     | exitcode: 0
[2025-06-03 05:49:50] 2025-06-03 09:49:31,186 | INFO     | exitmsg: OK
[2025-06-03 05:49:50] 2025-06-03 09:49:31,186 | INFO     | cpuconsumptiontime: 34447 s
[2025-06-03 05:49:50] 2025-06-03 09:49:31,186 | INFO     | nevents: 400
[2025-06-03 05:49:50] 2025-06-03 09:49:31,186 | INFO     | neventsw: 0
[2025-06-03 05:49:50] 2025-06-03 09:49:31,187 | INFO     | pid: 1504745
[2025-06-03 05:49:50] 2025-06-03 09:49:31,187 | INFO     | pgrp: 1504745
[2025-06-03 05:49:50] 2025-06-03 09:49:31,187 | INFO     | corecount: 12
[2025-06-03 05:49:50] 2025-06-03 09:49:31,187 | INFO     | event service: False
[2025-06-03 05:49:50] 2025-06-03 09:49:31,187 | INFO     | sizes: {0: 2405011, 1: 2405210, 4: 2405416, 11: 2405444, 3211: 2430719, 3213: 2439662, 3216: 2439846, 3227: 2440016}
[2025-06-03 05:49:50] 2025-06-03 09:49:31,187 | INFO     | --------------------------------------------------
[2025-06-03 05:49:50] 2025-06-03 09:49:31,187 | INFO     | 
[2025-06-03 05:49:50] 2025-06-03 09:49:31,187 | INFO     | executing command: ls -lF /var/lib/boinc/slots/44
[2025-06-03 05:49:50] 2025-06-03 09:49:31,206 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,207 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,207 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,207 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,207 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,207 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,207 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,207 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,207 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,208 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,208 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,208 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,208 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,208 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,208 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,208 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,208 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,208 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 05:49:50] 2025-06-03 09:49:31,208 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,209 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 05:49:50] 2025-06-03 09:49:31,209 | INFO     | job 6677472031 has completed (purged errors)
[2025-06-03 05:49:50] 2025-06-03 09:49:31,209 | INFO     | overall cleanup function is called
[2025-06-03 05:49:50] 2025-06-03 09:49:32,216 | INFO     | --- collectZombieJob: --- 10, [1504745]
[2025-06-03 05:49:50] 2025-06-03 09:49:32,217 | INFO     | zombie collector waiting for pid 1504745
[2025-06-03 05:49:50] 2025-06-03 09:49:32,217 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 05:49:50] 2025-06-03 09:49:32,217 | INFO     | collected zombie processes
[2025-06-03 05:49:50] 2025-06-03 09:49:32,217 | INFO     | will attempt to kill all subprocesses of pid=1504745
[2025-06-03 05:49:50] 2025-06-03 09:49:32,445 | INFO     | process IDs to be killed: [1504745] (in reverse order)
[2025-06-03 05:49:50] 2025-06-03 09:49:32,508 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 05:49:50] 2025-06-03 09:49:32,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 05:49:50] 2025-06-03 09:49:32,527 | INFO     | did not find any defunct processes belonging to 1504745
[2025-06-03 05:49:50] 2025-06-03 09:49:32,550 | INFO     | did not find any defunct processes belonging to 1504745
[2025-06-03 05:49:50] 2025-06-03 09:49:32,551 | INFO     | ready for new job
[2025-06-03 05:49:50] 2025-06-03 09:49:32,551 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 05:49:50] 2025-06-03 09:49:32,552 | INFO     | **************************************
[2025-06-03 05:49:50] 2025-06-03 09:49:32,552 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 05:49:50] 2025-06-03 09:49:32,552 | INFO     | **************************************
[2025-06-03 05:49:50] 2025-06-03 09:49:32,552 | INFO     | 
[2025-06-03 05:49:50] 2025-06-03 09:49:32,554 | INFO     | architecture information:
[2025-06-03 05:49:50] 2025-06-03 09:49:32,555 | INFO     | executing command: cat /etc/os-release
[2025-06-03 05:49:50] 2025-06-03 09:49:32,570 | INFO     | cat /etc/os-release:
[2025-06-03 05:49:50] NAME="CentOS Linux"
[2025-06-03 05:49:50] VERSION="7 (Core)"
[2025-06-03 05:49:50] ID="centos"
[2025-06-03 05:49:50] ID_LIKE="rhel fedora"
[2025-06-03 05:49:50] VERSION_ID="7"
[2025-06-03 05:49:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 05:49:50] ANSI_COLOR="0;31"
[2025-06-03 05:49:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 05:49:50] HOME_URL="https://www.centos.org/"
[2025-06-03 05:49:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 05:49:50] 
[2025-06-03 05:49:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 05:49:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 05:49:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 05:49:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 05:49:50] 
[2025-06-03 05:49:50] 2025-06-03 09:49:32,570 | INFO     | **************************************
[2025-06-03 05:49:50] 2025-06-03 09:49:32,777 | INFO     | PID=1497842 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 05:49:50] 2025-06-03 09:49:33,073 | INFO     | executing command: df -mP /var/lib/boinc/slots/44
[2025-06-03 05:49:50] 2025-06-03 09:49:33,087 | INFO     | sufficient remaining disk space (522123739136 B)
[2025-06-03 05:49:50] 2025-06-03 09:49:33,087 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 05:49:50] 2025-06-03 09:49:33,087 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 05:49:50] 2025-06-03 09:49:33,088 | INFO     | update_server=False
[2025-06-03 05:49:50] 2025-06-03 09:49:33,088 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 05:49:50] 2025-06-03 09:49:33,088 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 05:49:50] 2025-06-03 09:49:33,088 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 05:49:50] 2025-06-03 09:49:33,088 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 05:49:50] 2025-06-03 09:49:33,088 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 05:49:50] 2025-06-03 09:49:33,116 | INFO     | all job control threads have been joined
[2025-06-03 05:49:50] 2025-06-03 09:49:33,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:49:50] 2025-06-03 09:49:33,225 | INFO     | aborting loop
[2025-06-03 05:49:50] 2025-06-03 09:49:33,522 | INFO     | all payload control threads have been joined
[2025-06-03 05:49:50] 2025-06-03 09:49:34,064 | INFO     | all data control threads have been joined
[2025-06-03 05:49:50] 2025-06-03 09:49:34,093 | INFO     | [job] retrieve thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:34,121 | INFO     | [job] control thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:34,215 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:34,229 | INFO     | [job] job monitor thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:34,363 | INFO     | [payload] failed_post thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:34,528 | INFO     | [payload] control thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:34,531 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 05:49:50] 2025-06-03 09:49:34,873 | INFO     | [data] copytool_in thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:34,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 05:49:50] 2025-06-03 09:49:34,999 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:35,010 | INFO     | [job] validate thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:35,012 | INFO     | [payload] validate_post thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:35,068 | INFO     | [data] control thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:35,069 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:36,055 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:49:50] 2025-06-03 09:49:36,536 | INFO     | [data] copytool_out thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:37,061 | INFO     | [job] queue monitor thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:38,984 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:43,618 | INFO     | job.realtimelogging is not enabled
[2025-06-03 05:49:50] 2025-06-03 09:49:44,623 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 05:49:50] 2025-06-03 09:49:45,288 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140107251730240)>', '<ExcThread(monitor, started 140106698569472)>']
[2025-06-03 05:49:50] 2025-06-03 09:49:46,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 05:49:50] 2025-06-03 09:49:46,153 | INFO     | [monitor] control thread has ended
[2025-06-03 05:49:50] 2025-06-03 09:49:50,313 | INFO     | all workflow threads have been joined
[2025-06-03 05:49:50] 2025-06-03 09:49:50,313 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 05:49:50] 2025-06-03 09:49:50,313 | INFO     | traces error code: 0
[2025-06-03 05:49:50] 2025-06-03 09:49:50,313 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 05:49:50] 2025-06-03 09:49:50,423 [wrapper] ==== pilot stdout END ====
[2025-06-03 05:49:50] 2025-06-03 09:49:50,425 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 05:49:50] 2025-06-03 09:49:50,428 [wrapper] pilotpid: 1497842
[2025-06-03 05:49:50] 2025-06-03 09:49:50,430 [wrapper] Pilot exit status: 0
[2025-06-03 05:49:50] 2025-06-03 09:49:50,441 [wrapper] pandaids: 6677472031
[2025-06-03 05:49:50] 2025-06-03 09:49:50,481 [wrapper] cleanup supervisor_pilot 1523954 1497843
[2025-06-03 05:49:50] 2025-06-03 09:49:50,483 [wrapper] Test setup, not cleaning
[2025-06-03 05:49:50] 2025-06-03 09:49:50,486 [wrapper] apfmon messages muted
[2025-06-03 05:49:50] 2025-06-03 09:49:50,488 [wrapper] ==== wrapper stdout END ====
[2025-06-03 05:49:50] 2025-06-03 09:49:50,491 [wrapper] ==== wrapper stderr END ====
[2025-06-03 05:49:50]  *** Error codes and diagnostics ***
[2025-06-03 05:49:50]     "exeErrorCode": 0,
[2025-06-03 05:49:50]     "exeErrorDiag": "",
[2025-06-03 05:49:50]     "pilotErrorCode": 0,
[2025-06-03 05:49:50]     "pilotErrorDiag": "",
[2025-06-03 05:49:50]  *** Listing of results directory ***
[2025-06-03 05:49:50] total 388508
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc    495897 Jun  3 01:38 pilot3.tar.gz
[2025-06-03 05:49:50] -rwx------ 1 boinc boinc     37140 Jun  3 01:50 runpilot2-wrapper.sh
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc      5111 Jun  3 01:50 queuedata.json
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc       100 Jun  3 04:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 05:49:50] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 04:55 run_atlas
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc       105 Jun  3 04:55 job.xml
[2025-06-03 05:49:50] -rw-r--r-- 2 boinc boinc 214852517 Jun  3 04:55 EVNT.45006593._000856.pool.root.1
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc      9666 Jun  3 04:55 init_data.xml
[2025-06-03 05:49:50] drwxrwx--x 1 boinc boinc        76 Jun  3 04:55 shared
[2025-06-03 05:49:50] -rw-r--r-- 2 boinc boinc    508878 Jun  3 04:55 input.tar.gz
[2025-06-03 05:49:50] -rw-r--r-- 2 boinc boinc     15093 Jun  3 04:55 start_atlas.sh
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc         0 Jun  3 04:55 boinc_lockfile
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc      2523 Jun  3 04:55 pandaJob.out
[2025-06-03 05:49:50] -rw------- 1 boinc boinc    985498 Jun  3 04:55 agis_schedconf.cvmfs.json
[2025-06-03 05:49:50] -rw------- 1 boinc boinc   1603667 Jun  3 04:55 agis_ddmendpoints.agis.ALL.json
[2025-06-03 05:49:50] drwx------ 1 boinc boinc       368 Jun  3 04:55 pilot3
[2025-06-03 05:49:50] -rw------- 1 boinc boinc 177817044 Jun  3 05:48 HITS.45006595._021388.pool.root.1
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc       529 Jun  3 05:49 boinc_task_state.xml
[2025-06-03 05:49:50] -rw------- 1 boinc boinc      1032 Jun  3 05:49 memory_monitor_summary.json
[2025-06-03 05:49:50] -rw------- 1 boinc boinc    344510 Jun  3 05:49 log.45006595._021388.job.log.tgz.1
[2025-06-03 05:49:50] -rw------- 1 boinc boinc        95 Jun  3 05:49 pilot_heartbeat.json
[2025-06-03 05:49:50] -rw------- 1 boinc boinc      7725 Jun  3 05:49 heartbeat.json
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc      8192 Jun  3 05:49 boinc_mmap_file
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc        27 Jun  3 05:49 wrapper_checkpoint.txt
[2025-06-03 05:49:50] -rw------- 1 boinc boinc      4869 Jun  3 05:49 pilotlog.txt
[2025-06-03 05:49:50] -rw------- 1 boinc boinc    325442 Jun  3 05:49 log.45006595._021388.job.log.1
[2025-06-03 05:49:50] -rw------- 1 boinc boinc       357 Jun  3 05:49 output.list
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc       620 Jun  3 05:49 runtime_log
[2025-06-03 05:49:50] -rw------- 1 boinc boinc    686080 Jun  3 05:49 result.tar.gz
[2025-06-03 05:49:50] -rw------- 1 boinc boinc       674 Jun  3 05:49 RX2KDmMiZg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmwWXKDm5YMZDo.diag
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc      8760 Jun  3 05:49 runtime_log.err
[2025-06-03 05:49:50] -rw-r--r-- 1 boinc boinc     22248 Jun  3 05:49 stderr.txt
[2025-06-03 05:49:50] HITS file was successfully produced:
[2025-06-03 05:49:50] -rw------- 1 boinc boinc 177817044 Jun  3 05:48 shared/HITS.pool.root.1
[2025-06-03 05:49:50]  *** Contents of shared directory: ***
[2025-06-03 05:49:50] total 384660
[2025-06-03 05:49:50] -rw-r--r-- 2 boinc boinc 214852517 Jun  3 04:55 ATLAS.root_0
[2025-06-03 05:49:50] -rw-r--r-- 2 boinc boinc    508878 Jun  3 04:55 input.tar.gz
[2025-06-03 05:49:50] -rw-r--r-- 2 boinc boinc     15093 Jun  3 04:55 start_atlas.sh
[2025-06-03 05:49:50] -rw------- 1 boinc boinc 177817044 Jun  3 05:48 HITS.pool.root.1
[2025-06-03 05:49:50] -rw------- 1 boinc boinc    686080 Jun  3 05:49 result.tar.gz
05:49:52 (1494026): run_atlas exited; CPU time 34507.754433
05:49:52 (1494026): called boinc_finish(0)

</stderr_txt>
]]>

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