Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:53:10 (5344): wrapper (7.7.26015): starting
04:53:10 (5344): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 04:53:10] Arguments: --nthreads 8
[2025-06-03 04:53:10] Threads: 8
[2025-06-03 04:53:10] Checking for CVMFS
[2025-06-03 04:53:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 04:53:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 04:53:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 04:53:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 04:53:11] 2.11.2.0 5563 27128 191672 146735 2 249 17468773 18432000 5497 130560 0 53348708 99.326 68597926 28512 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 04:53:11] CVMFS is ok
[2025-06-03 04:53:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 04:53:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 04:53:11] Further information can be found at the LHC@home message board.
[2025-06-03 04:53:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 04:53:11] Checking for apptainer binary...
[2025-06-03 04:53:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 04:53:11] Running /usr/bin/apptainer --version
[2025-06-03 04:53:11] apptainer version 1.3.2-1.el7
[2025-06-03 04:53:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 04:53:11] c-210-35-2.aglt2.org
[2025-06-03 04:53:11] apptainer works
[2025-06-03 04:53:11] Set ATHENA_PROC_NUMBER=8
[2025-06-03 04:53:11] Set ATHENA_CORE_NUMBER=8
[2025-06-03 04:53:11] Starting ATLAS job with PandaID=6677443179
[2025-06-03 04:53:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 06:14:29]  *** The last 200 lines of the pilot log: ***
[2025-06-03 06:14:29]  lfn=log.45006595._016755.job.log.tgz.1
[2025-06-03 06:14:29]  mtime=0
[2025-06-03 06:14:29]  protocol_id=None
[2025-06-03 06:14:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 06:14:29]  replicas=None
[2025-06-03 06:14:29]  scope=mc23_13p6TeV
[2025-06-03 06:14:29]  status=None
[2025-06-03 06:14:29]  status_code=0
[2025-06-03 06:14:29]  storage_token=
[2025-06-03 06:14:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677443179/log.45006595._016755.job.log.tgz.1
[2025-06-03 06:14:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/bc/log.45006595._016755.job.log.tgz.1
[2025-06-03 06:14:29]  workdir=None
[2025-06-03 06:14:29] ]
[2025-06-03 06:14:29] 2025-06-03 10:14:08,380 | INFO     | transferring file log.45006595._016755.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677443179/log.45006595._016755.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 06:14:29] 2025-06-03 10:14:08,380 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677443179/log.45006595._016755.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._016755.job
[2025-06-03 06:14:29] 2025-06-03 10:14:08,400 | INFO     | adding to output.list: log.45006595._016755.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/bc/log.45006595._016755.job.log.tg
[2025-06-03 06:14:29] 2025-06-03 10:14:08,401 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 06:14:29] 2025-06-03 10:14:08,401 | INFO     | summary of transferred files:
[2025-06-03 06:14:29] 2025-06-03 10:14:08,401 | INFO     |  -- lfn=log.45006595._016755.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 06:14:29] 2025-06-03 10:14:08,401 | INFO     | stage-out finished correctly
[2025-06-03 06:14:29] 2025-06-03 10:14:09,117 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 06:14:29] 2025-06-03 10:14:11,081 | INFO     | job 6677443179 has state=finished
[2025-06-03 06:14:29] 2025-06-03 10:14:11,081 | INFO     | preparing for final server update for job 6677443179 in state='finished'
[2025-06-03 06:14:29] 2025-06-03 10:14:11,082 | INFO     | this job has now completed (state=finished)
[2025-06-03 06:14:29] 2025-06-03 10:14:11,082 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 06:14:29] 2025-06-03 10:14:11,082 | INFO     | log transfer has been attempted: DONE
[2025-06-03 06:14:29] 2025-06-03 10:14:11,082 | INFO     | job 6677443179 has finished - writing final server update
[2025-06-03 06:14:29] 2025-06-03 10:14:11,082 | INFO     | total number of processed events: 400 (read)
[2025-06-03 06:14:29] 2025-06-03 10:14:11,090 | INFO     | executing command: lscpu
[2025-06-03 06:14:29] 2025-06-03 10:14:11,150 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 06:14:29] 2025-06-03 10:14:11,985 | WARNING  | process 15636 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 06:14:29] 2025-06-03 10:14:11,985 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677443179/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 06:14:29] 2025-06-03 10:14:12,127 | INFO     | number of running child processes to parent process 15636: 1
[2025-06-03 06:14:29] 2025-06-03 10:14:12,127 | INFO     | maximum number of monitored processes: 6
[2025-06-03 06:14:29] 2025-06-03 10:14:13,774 | INFO     | PID=8939 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-03 06:14:29] 2025-06-03 10:14:13,774 | INFO     | .. there are 7 such processes running
[2025-06-03 06:14:29] 2025-06-03 10:14:14,630 | INFO     | monitor loop #362: job 0:6677443179 is in state 'finished'
[2025-06-03 06:14:29] 2025-06-03 10:14:14,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 06:14:29] 2025-06-03 10:14:14,791 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 06:14:29] 2025-06-03 10:14:14,792 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677443179/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 06:14:29] 2025-06-03 10:14:14,793 | INFO     | extracted standard info from prmon json
[2025-06-03 06:14:29] 2025-06-03 10:14:14,793 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 06:14:29] 2025-06-03 10:14:14,793 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 06:14:29] 2025-06-03 10:14:14,793 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 06:14:29] 2025-06-03 10:14:14,794 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 06:14:29] 2025-06-03 10:14:14,796 | INFO     | fitting pss+swap vs Time
[2025-06-03 06:14:29] 2025-06-03 10:14:14,797 | INFO     | sum of square deviations: 115715658.0
[2025-06-03 06:14:29] 2025-06-03 10:14:14,797 | INFO     | sum of deviations: -446640627.5
[2025-06-03 06:14:29] 2025-06-03 10:14:14,798 | INFO     | mean x: 1748943300.5
[2025-06-03 06:14:29] 2025-06-03 10:14:14,798 | INFO     | mean y: 2486086.8194444445
[2025-06-03 06:14:29] 2025-06-03 10:14:14,798 | INFO     | -- intersect: 6753077551.2627535
[2025-06-03 06:14:29] 2025-06-03 10:14:14,798 | INFO     | intersect: 6753077551.2627535
[2025-06-03 06:14:29] 2025-06-03 10:14:14,798 | INFO     | chi2: 0.001273785095925916
[2025-06-03 06:14:29] 2025-06-03 10:14:14,798 | INFO     | -- intersect: 6753077551.2627535
[2025-06-03 06:14:29] 2025-06-03 10:14:14,799 | INFO     | current memory leak: -3.86 B/s (using 72 data points, chi2=0.00)
[2025-06-03 06:14:29] 2025-06-03 10:14:14,799 | INFO     | ..............................
[2025-06-03 06:14:29] 2025-06-03 10:14:14,799 | INFO     | . Timing measurements:
[2025-06-03 06:14:29] 2025-06-03 10:14:14,800 | INFO     | . get job = 0 s
[2025-06-03 06:14:29] 2025-06-03 10:14:14,800 | INFO     | . initial setup = 2 s
[2025-06-03 06:14:29] 2025-06-03 10:14:14,800 | INFO     | . payload setup = 6 s
[2025-06-03 06:14:29] 2025-06-03 10:14:14,800 | INFO     | . stage-in = 0 s
[2025-06-03 06:14:29] 2025-06-03 10:14:14,800 | INFO     | . payload execution = 4820 s
[2025-06-03 06:14:29] 2025-06-03 10:14:14,800 | INFO     | . stage-out = 0 s
[2025-06-03 06:14:29] 2025-06-03 10:14:14,800 | INFO     | . log creation = 0 s
[2025-06-03 06:14:29] 2025-06-03 10:14:14,800 | INFO     | ..............................
[2025-06-03 06:14:29] 2025-06-03 10:14:14,871 | INFO     | 
[2025-06-03 06:14:29] 2025-06-03 10:14:14,871 | INFO     | job summary report
[2025-06-03 06:14:29] 2025-06-03 10:14:14,871 | INFO     | --------------------------------------------------
[2025-06-03 06:14:29] 2025-06-03 10:14:14,871 | INFO     | PanDA job id: 6677443179
[2025-06-03 06:14:29] 2025-06-03 10:14:14,871 | INFO     | task id: 45006595
[2025-06-03 06:14:29] 2025-06-03 10:14:14,871 | INFO     | errors: (none)
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | pilot state: finished 
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | transexitcode: 0
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | exeerrorcode: 0
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | exeerrordiag: 
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | exitcode: 0
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | exitmsg: OK
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | cpuconsumptiontime: 32360 s
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | nevents: 400
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | neventsw: 0
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | pid: 15636
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | pgrp: 15636
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | corecount: 8
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | event service: False
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | sizes: {0: 2404953, 1: 2405208, 5: 2405414, 11: 2405470, 4830: 2431694, 4831: 2431693, 4832: 2440874, 4838: 2440988}
[2025-06-03 06:14:29] 2025-06-03 10:14:14,872 | INFO     | --------------------------------------------------
[2025-06-03 06:14:29] 2025-06-03 10:14:14,873 | INFO     | 
[2025-06-03 06:14:29] 2025-06-03 10:14:14,873 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 06:14:29] 2025-06-03 10:14:14,907 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,907 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,907 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,907 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,907 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,907 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,907 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 06:14:29] 2025-06-03 10:14:14,908 | INFO     | job 6677443179 has completed (purged errors)
[2025-06-03 06:14:29] 2025-06-03 10:14:14,909 | INFO     | overall cleanup function is called
[2025-06-03 06:14:29] 2025-06-03 10:14:15,917 | INFO     | --- collectZombieJob: --- 10, [15636]
[2025-06-03 06:14:29] 2025-06-03 10:14:15,917 | INFO     | zombie collector waiting for pid 15636
[2025-06-03 06:14:29] 2025-06-03 10:14:15,917 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 06:14:29] 2025-06-03 10:14:15,917 | INFO     | collected zombie processes
[2025-06-03 06:14:29] 2025-06-03 10:14:15,917 | INFO     | will attempt to kill all subprocesses of pid=15636
[2025-06-03 06:14:29] 2025-06-03 10:14:16,053 | INFO     | process IDs to be killed: [15636] (in reverse order)
[2025-06-03 06:14:29] 2025-06-03 10:14:16,130 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 06:14:29] 2025-06-03 10:14:16,130 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 06:14:29] 2025-06-03 10:14:16,135 | INFO     | did not find any defunct processes belonging to 15636
[2025-06-03 06:14:29] 2025-06-03 10:14:16,140 | INFO     | did not find any defunct processes belonging to 15636
[2025-06-03 06:14:29] 2025-06-03 10:14:16,140 | INFO     | ready for new job
[2025-06-03 06:14:29] 2025-06-03 10:14:16,140 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 06:14:29] 2025-06-03 10:14:16,142 | INFO     | **************************************
[2025-06-03 06:14:29] 2025-06-03 10:14:16,142 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 06:14:29] 2025-06-03 10:14:16,142 | INFO     | **************************************
[2025-06-03 06:14:29] 2025-06-03 10:14:16,142 | INFO     | 
[2025-06-03 06:14:29] 2025-06-03 10:14:16,145 | INFO     | architecture information:
[2025-06-03 06:14:29] 2025-06-03 10:14:16,145 | INFO     | executing command: cat /etc/os-release
[2025-06-03 06:14:29] 2025-06-03 10:14:16,161 | INFO     | cat /etc/os-release:
[2025-06-03 06:14:29] NAME="CentOS Linux"
[2025-06-03 06:14:29] VERSION="7 (Core)"
[2025-06-03 06:14:29] ID="centos"
[2025-06-03 06:14:29] ID_LIKE="rhel fedora"
[2025-06-03 06:14:29] VERSION_ID="7"
[2025-06-03 06:14:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 06:14:29] ANSI_COLOR="0;31"
[2025-06-03 06:14:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 06:14:29] HOME_URL="https://www.centos.org/"
[2025-06-03 06:14:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 06:14:29] 
[2025-06-03 06:14:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 06:14:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 06:14:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 06:14:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 06:14:29] 
[2025-06-03 06:14:29] 2025-06-03 10:14:16,161 | INFO     | **************************************
[2025-06-03 06:14:29] 2025-06-03 10:14:16,665 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 06:14:29] 2025-06-03 10:14:16,683 | INFO     | sufficient remaining disk space (54628712448 B)
[2025-06-03 06:14:29] 2025-06-03 10:14:16,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 06:14:29] 2025-06-03 10:14:16,684 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 06:14:29] 2025-06-03 10:14:16,684 | INFO     | update_server=False
[2025-06-03 06:14:29] 2025-06-03 10:14:16,684 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 06:14:29] 2025-06-03 10:14:16,684 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 06:14:29] 2025-06-03 10:14:16,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 06:14:29] 2025-06-03 10:14:16,685 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 06:14:29] 2025-06-03 10:14:16,685 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 06:14:29] 2025-06-03 10:14:16,685 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 06:14:29] 2025-06-03 10:14:16,685 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 06:14:29] 2025-06-03 10:14:17,133 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 06:14:29] 2025-06-03 10:14:17,133 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 06:14:29] 2025-06-03 10:14:17,133 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 06:14:29] 2025-06-03 10:14:17,133 | INFO     | will abort loop
[2025-06-03 06:14:29] 2025-06-03 10:14:17,227 | INFO     | all data control threads have been joined
[2025-06-03 06:14:29] 2025-06-03 10:14:17,329 | INFO     | all payload control threads have been joined
[2025-06-03 06:14:29] 2025-06-03 10:14:17,689 | INFO     | [job] retrieve thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:17,691 | INFO     | [job] queue monitor thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,043 | INFO     | [data] copytool_in thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,074 | INFO     | [job] validate thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,090 | INFO     | [payload] validate_post thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,138 | INFO     | [payload] failed_post thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,139 | INFO     | [job] job monitor thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,232 | INFO     | [data] control thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,236 | INFO     | all job control threads have been joined
[2025-06-03 06:14:29] 2025-06-03 10:14:18,334 | INFO     | [payload] control thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,386 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,416 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,424 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,691 | INFO     | [data] copytool_out thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:18,895 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:19,242 | INFO     | [job] control thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:19,709 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 06:14:29] 2025-06-03 10:14:23,719 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 06:14:29] 2025-06-03 10:14:24,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140374405482304)>', '<ExcThread(monitor, started 140373749917440)>']
[2025-06-03 06:14:29] 2025-06-03 10:14:24,727 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 06:14:29] 2025-06-03 10:14:24,727 | INFO     | [monitor] control thread has ended
[2025-06-03 06:14:29] 2025-06-03 10:14:29,475 | INFO     | all workflow threads have been joined
[2025-06-03 06:14:29] 2025-06-03 10:14:29,475 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 06:14:29] 2025-06-03 10:14:29,476 | INFO     | traces error code: 0
[2025-06-03 06:14:29] 2025-06-03 10:14:29,476 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 06:14:29] 2025-06-03 10:14:29,587 [wrapper] ==== pilot stdout END ====
[2025-06-03 06:14:29] 2025-06-03 10:14:29,591 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 06:14:29] 2025-06-03 10:14:29,594 [wrapper] pilotpid: 8939
[2025-06-03 06:14:29] 2025-06-03 10:14:29,597 [wrapper] Pilot exit status: 0
[2025-06-03 06:14:29] 2025-06-03 10:14:29,608 [wrapper] pandaids: 6677443179
[2025-06-03 06:14:29] 2025-06-03 10:14:29,661 [wrapper] cleanup supervisor_pilot 181854 8940
[2025-06-03 06:14:29] 2025-06-03 10:14:29,664 [wrapper] Test setup, not cleaning
[2025-06-03 06:14:29] 2025-06-03 10:14:29,667 [wrapper] apfmon messages muted
[2025-06-03 06:14:29] 2025-06-03 10:14:29,670 [wrapper] ==== wrapper stdout END ====
[2025-06-03 06:14:29] 2025-06-03 10:14:29,673 [wrapper] ==== wrapper stderr END ====
[2025-06-03 06:14:29]  *** Error codes and diagnostics ***
[2025-06-03 06:14:29]     "exeErrorCode": 0,
[2025-06-03 06:14:29]     "exeErrorDiag": "",
[2025-06-03 06:14:29]     "pilotErrorCode": 0,
[2025-06-03 06:14:29]     "pilotErrorDiag": "",
[2025-06-03 06:14:29]  *** Listing of results directory ***
[2025-06-03 06:14:29] total 390676
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas    495897 Jun  2 21:51 pilot3.tar.gz
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas      5111 Jun  2 22:00 queuedata.json
[2025-06-03 06:14:29] -rwx------ 1 boincer umatlas     37140 Jun  2 22:01 runpilot2-wrapper.sh
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas       100 Jun  3 04:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 06:14:29] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 04:53 run_atlas
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas       105 Jun  3 04:53 job.xml
[2025-06-03 06:14:29] -rw-r--r-- 2 boincer umatlas 214423084 Jun  3 04:53 EVNT.45006593._000671.pool.root.1
[2025-06-03 06:14:29] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 04:53 start_atlas.sh
[2025-06-03 06:14:29] drwxrwx--x 2 boincer umatlas      4096 Jun  3 04:53 shared
[2025-06-03 06:14:29] -rw-r--r-- 2 boincer umatlas    508872 Jun  3 04:53 input.tar.gz
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas         0 Jun  3 04:53 boinc_lockfile
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas      2523 Jun  3 04:53 pandaJob.out
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas    985498 Jun  3 04:53 agis_schedconf.cvmfs.json
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas   1603667 Jun  3 04:53 agis_ddmendpoints.agis.ALL.json
[2025-06-03 06:14:29] drwx------ 4 boincer umatlas      4096 Jun  3 04:53 pilot3
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas      6267 Jun  3 06:11 init_data.xml
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas 180256160 Jun  3 06:13 HITS.45006595._016755.pool.root.1
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas        95 Jun  3 06:13 pilot_heartbeat.json
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas       530 Jun  3 06:13 boinc_task_state.xml
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas      1046 Jun  3 06:14 memory_monitor_summary.json
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas    293774 Jun  3 06:14 log.45006595._016755.job.log.tgz.1
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas      7734 Jun  3 06:14 heartbeat.json
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 06:14 boinc_mmap_file
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas        27 Jun  3 06:14 wrapper_checkpoint.txt
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas      4662 Jun  3 06:14 pilotlog.txt
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas    475620 Jun  3 06:14 log.45006595._016755.job.log.1
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas       357 Jun  3 06:14 output.list
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas       620 Jun  3 06:14 runtime_log
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas    788480 Jun  3 06:14 result.tar.gz
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas      8669 Jun  3 06:14 runtime_log.err
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas       659 Jun  3 06:14 n2SNDmi8Vg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHThKDmNArqNm.diag
[2025-06-03 06:14:29] -rw-r--r-- 1 boincer umatlas     21647 Jun  3 06:14 stderr.txt
[2025-06-03 06:14:29] HITS file was successfully produced:
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas 180256160 Jun  3 06:13 shared/HITS.pool.root.1
[2025-06-03 06:14:29]  *** Contents of shared directory: ***
[2025-06-03 06:14:29] total 386724
[2025-06-03 06:14:29] -rw-r--r-- 2 boincer umatlas 214423084 Jun  3 04:53 ATLAS.root_0
[2025-06-03 06:14:29] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 04:53 start_atlas.sh
[2025-06-03 06:14:29] -rw-r--r-- 2 boincer umatlas    508872 Jun  3 04:53 input.tar.gz
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas 180256160 Jun  3 06:13 HITS.pool.root.1
[2025-06-03 06:14:29] -rw------- 1 boincer umatlas    788480 Jun  3 06:14 result.tar.gz
06:14:31 (5344): run_atlas exited; CPU time 32121.610787
06:14:31 (5344): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN