Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:40:19 (3558388): wrapper (7.7.26015): starting
04:40:19 (3558388): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 04:40:19] Arguments: --nthreads 8
[2025-06-03 04:40:19] Threads: 8
[2025-06-03 04:40:19] Checking for CVMFS
[2025-06-03 04:40:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 04:40:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 04:40:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 04:40:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 04:40:20] 2.12.6.0 34999 36980 335832 146735 3 195 20275448 32935937 9770 16776704 1 277073343 99.596 289442327 22188 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 04:40:20] CVMFS is ok
[2025-06-03 04:40:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 04:40:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 04:40:20] Further information can be found at the LHC@home message board.
[2025-06-03 04:40:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 04:40:20] Checking for apptainer binary...
[2025-06-03 04:40:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 04:40:20] Running /usr/bin/apptainer --version
[2025-06-03 04:40:20] apptainer version 1.4.1-1.el9
[2025-06-03 04:40:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 04:40:20] c7-2-16.aglt2.org
[2025-06-03 04:40:20] apptainer works
[2025-06-03 04:40:20] Set ATHENA_PROC_NUMBER=8
[2025-06-03 04:40:20] Set ATHENA_CORE_NUMBER=8
[2025-06-03 04:40:20] Starting ATLAS job with PandaID=6677441238
[2025-06-03 04:40:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 05:46:14]  *** The last 200 lines of the pilot log: ***
[2025-06-03 05:46:14]  filetype=log
[2025-06-03 05:46:14]  guid=ddd4813e-b343-4049-a41c-efd0c6f1aab7
[2025-06-03 05:46:14]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 05:46:14]  is_altstaged=None
[2025-06-03 05:46:14]  is_tar=False
[2025-06-03 05:46:14]  lfn=log.45006595._015660.job.log.tgz.1
[2025-06-03 05:46:14]  mtime=0
[2025-06-03 05:46:14]  protocol_id=None
[2025-06-03 05:46:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 05:46:14]  replicas=None
[2025-06-03 05:46:14]  scope=mc23_13p6TeV
[2025-06-03 05:46:14]  status=None
[2025-06-03 05:46:14]  status_code=0
[2025-06-03 05:46:14]  storage_token=
[2025-06-03 05:46:14]  surl=/tmp/boinchome/slots/8/PanDA_Pilot-6677441238/log.45006595._015660.job.log.tgz.1
[2025-06-03 05:46:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/47/log.45006595._015660.job.log.tgz.1
[2025-06-03 05:46:14]  workdir=None
[2025-06-03 05:46:14] ]
[2025-06-03 05:46:14] 2025-06-03 09:45:56,078 | INFO     | transferring file log.45006595._015660.job.log.tgz.1 from /tmp/boinchome/slots/8/PanDA_Pilot-6677441238/log.45006595._015660.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 05:46:14] 2025-06-03 09:45:56,078 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/8/PanDA_Pilot-6677441238/log.45006595._015660.job.log.tgz.1 /tmp/boinchome/slots/8/log.45006595._015660.job
[2025-06-03 05:46:14] 2025-06-03 09:45:56,100 | INFO     | adding to output.list: log.45006595._015660.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/47/log.45006595._015660.job.log.tg
[2025-06-03 05:46:14] 2025-06-03 09:45:56,101 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 05:46:14] 2025-06-03 09:45:56,101 | INFO     | summary of transferred files:
[2025-06-03 05:46:14] 2025-06-03 09:45:56,101 | INFO     |  -- lfn=log.45006595._015660.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 05:46:14] 2025-06-03 09:45:56,101 | INFO     | stage-out finished correctly
[2025-06-03 05:46:14] 2025-06-03 09:45:56,829 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 05:46:14] 2025-06-03 09:45:56,911 | INFO     | job 6677441238 has state=finished
[2025-06-03 05:46:14] 2025-06-03 09:45:56,912 | INFO     | preparing for final server update for job 6677441238 in state='finished'
[2025-06-03 05:46:14] 2025-06-03 09:45:56,913 | INFO     | this job has now completed (state=finished)
[2025-06-03 05:46:14] 2025-06-03 09:45:56,913 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 05:46:14] 2025-06-03 09:45:56,914 | INFO     | log transfer has been attempted: DONE
[2025-06-03 05:46:14] 2025-06-03 09:45:56,914 | INFO     | job 6677441238 has finished - writing final server update
[2025-06-03 05:46:14] 2025-06-03 09:45:56,914 | INFO     | total number of processed events: 400 (read)
[2025-06-03 05:46:14] 2025-06-03 09:45:56,935 | INFO     | executing command: lscpu
[2025-06-03 05:46:14] 2025-06-03 09:45:57,038 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 05:46:14] 2025-06-03 09:45:57,083 | WARNING  | process 3580764 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 05:46:14] 2025-06-03 09:45:57,084 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6677441238/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 05:46:14] 2025-06-03 09:45:57,537 | INFO     | number of running child processes to parent process 3580764: 1
[2025-06-03 05:46:14] 2025-06-03 09:45:57,537 | INFO     | maximum number of monitored processes: 6
[2025-06-03 05:46:14] 2025-06-03 09:46:00,041 | INFO     | monitor loop #286: job 0:6677441238 is in state 'finished'
[2025-06-03 05:46:14] 2025-06-03 09:46:00,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:46:14] 2025-06-03 09:46:01,252 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 05:46:14] 2025-06-03 09:46:01,252 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6677441238/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 05:46:14] 2025-06-03 09:46:01,253 | INFO     | extracted standard info from prmon json
[2025-06-03 05:46:14] 2025-06-03 09:46:01,253 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 05:46:14] 2025-06-03 09:46:01,253 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 05:46:14] 2025-06-03 09:46:01,254 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 05:46:14] 2025-06-03 09:46:01,254 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 05:46:14] 2025-06-03 09:46:01,255 | INFO     | fitting pss+swap vs Time
[2025-06-03 05:46:14] 2025-06-03 09:46:01,256 | INFO     | sum of square deviations: 57407588.0
[2025-06-03 05:46:14] 2025-06-03 09:46:01,256 | INFO     | sum of deviations: 8014616577.0
[2025-06-03 05:46:14] 2025-06-03 09:46:01,256 | INFO     | mean x: 1748942072.0
[2025-06-03 05:46:14] 2025-06-03 09:46:01,256 | INFO     | mean y: 2097696.210526316
[2025-06-03 05:46:14] 2025-06-03 09:46:01,256 | INFO     | -- intersect: -244165975041.211
[2025-06-03 05:46:14] 2025-06-03 09:46:01,256 | INFO     | intersect: -244165975041.211
[2025-06-03 05:46:14] 2025-06-03 09:46:01,257 | INFO     | chi2: 0.8966953353175156
[2025-06-03 05:46:14] 2025-06-03 09:46:01,257 | INFO     | -- intersect: -244165975041.211
[2025-06-03 05:46:14] 2025-06-03 09:46:01,257 | INFO     | current memory leak: 139.61 B/s (using 57 data points, chi2=0.90)
[2025-06-03 05:46:14] 2025-06-03 09:46:01,257 | INFO     | ..............................
[2025-06-03 05:46:14] 2025-06-03 09:46:01,257 | INFO     | . Timing measurements:
[2025-06-03 05:46:14] 2025-06-03 09:46:01,257 | INFO     | . get job = 0 s
[2025-06-03 05:46:14] 2025-06-03 09:46:01,257 | INFO     | . initial setup = 2 s
[2025-06-03 05:46:14] 2025-06-03 09:46:01,257 | INFO     | . payload setup = 7 s
[2025-06-03 05:46:14] 2025-06-03 09:46:01,258 | INFO     | . stage-in = 0 s
[2025-06-03 05:46:14] 2025-06-03 09:46:01,258 | INFO     | . payload execution = 3897 s
[2025-06-03 05:46:14] 2025-06-03 09:46:01,258 | INFO     | . stage-out = 0 s
[2025-06-03 05:46:14] 2025-06-03 09:46:01,258 | INFO     | . log creation = 0 s
[2025-06-03 05:46:14] 2025-06-03 09:46:01,258 | INFO     | ..............................
[2025-06-03 05:46:14] 2025-06-03 09:46:01,343 | INFO     | 
[2025-06-03 05:46:14] 2025-06-03 09:46:01,343 | INFO     | job summary report
[2025-06-03 05:46:14] 2025-06-03 09:46:01,343 | INFO     | --------------------------------------------------
[2025-06-03 05:46:14] 2025-06-03 09:46:01,343 | INFO     | PanDA job id: 6677441238
[2025-06-03 05:46:14] 2025-06-03 09:46:01,343 | INFO     | task id: 45006595
[2025-06-03 05:46:14] 2025-06-03 09:46:01,343 | INFO     | errors: (none)
[2025-06-03 05:46:14] 2025-06-03 09:46:01,343 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 05:46:14] 2025-06-03 09:46:01,343 | INFO     | pilot state: finished 
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | transexitcode: 0
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | exeerrorcode: 0
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | exeerrordiag: 
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | exitcode: 0
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | exitmsg: OK
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | cpuconsumptiontime: 25582 s
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | nevents: 400
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | neventsw: 0
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | pid: 3580764
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | pgrp: 3580764
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | corecount: 8
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | event service: False
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | sizes: {0: 2405011, 1: 2405210, 5: 2405416, 11: 2405472, 3908: 2431189, 3909: 2440130, 3910: 2440314, 3914: 2440484}
[2025-06-03 05:46:14] 2025-06-03 09:46:01,344 | INFO     | --------------------------------------------------
[2025-06-03 05:46:14] 2025-06-03 09:46:01,345 | INFO     | 
[2025-06-03 05:46:14] 2025-06-03 09:46:01,345 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-06-03 05:46:14] 2025-06-03 09:46:01,368 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,370 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,370 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,370 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,370 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,370 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,370 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,370 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,370 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,370 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,371 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,371 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,371 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,371 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,371 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,371 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,371 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,371 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 05:46:14] 2025-06-03 09:46:01,371 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,371 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 05:46:14] 2025-06-03 09:46:01,371 | INFO     | job 6677441238 has completed (purged errors)
[2025-06-03 05:46:14] 2025-06-03 09:46:01,372 | INFO     | overall cleanup function is called
[2025-06-03 05:46:14] 2025-06-03 09:46:02,381 | INFO     | --- collectZombieJob: --- 10, [3580764]
[2025-06-03 05:46:14] 2025-06-03 09:46:02,383 | INFO     | zombie collector waiting for pid 3580764
[2025-06-03 05:46:14] 2025-06-03 09:46:02,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 05:46:14] 2025-06-03 09:46:02,383 | INFO     | collected zombie processes
[2025-06-03 05:46:14] 2025-06-03 09:46:02,383 | INFO     | will attempt to kill all subprocesses of pid=3580764
[2025-06-03 05:46:14] 2025-06-03 09:46:02,852 | INFO     | process IDs to be killed: [3580764] (in reverse order)
[2025-06-03 05:46:14] 2025-06-03 09:46:03,011 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 05:46:14] 2025-06-03 09:46:03,012 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 05:46:14] 2025-06-03 09:46:03,031 | INFO     | did not find any defunct processes belonging to 3580764
[2025-06-03 05:46:14] 2025-06-03 09:46:03,046 | INFO     | did not find any defunct processes belonging to 3580764
[2025-06-03 05:46:14] 2025-06-03 09:46:03,047 | INFO     | ready for new job
[2025-06-03 05:46:14] 2025-06-03 09:46:03,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 05:46:14] 2025-06-03 09:46:03,051 | INFO     | **************************************
[2025-06-03 05:46:14] 2025-06-03 09:46:03,051 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 05:46:14] 2025-06-03 09:46:03,051 | INFO     | **************************************
[2025-06-03 05:46:14] 2025-06-03 09:46:03,051 | INFO     | 
[2025-06-03 05:46:14] 2025-06-03 09:46:03,068 | INFO     | architecture information:
[2025-06-03 05:46:14] 2025-06-03 09:46:03,068 | INFO     | executing command: cat /etc/os-release
[2025-06-03 05:46:14] 2025-06-03 09:46:03,089 | INFO     | cat /etc/os-release:
[2025-06-03 05:46:14] NAME="CentOS Linux"
[2025-06-03 05:46:14] VERSION="7 (Core)"
[2025-06-03 05:46:14] ID="centos"
[2025-06-03 05:46:14] ID_LIKE="rhel fedora"
[2025-06-03 05:46:14] VERSION_ID="7"
[2025-06-03 05:46:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 05:46:14] ANSI_COLOR="0;31"
[2025-06-03 05:46:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 05:46:14] HOME_URL="https://www.centos.org/"
[2025-06-03 05:46:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 05:46:14] 
[2025-06-03 05:46:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 05:46:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 05:46:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 05:46:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 05:46:14] 
[2025-06-03 05:46:14] 2025-06-03 09:46:03,089 | INFO     | **************************************
[2025-06-03 05:46:14] 2025-06-03 09:46:03,592 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-06-03 05:46:14] 2025-06-03 09:46:03,613 | INFO     | sufficient remaining disk space (70552387584 B)
[2025-06-03 05:46:14] 2025-06-03 09:46:03,613 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 05:46:14] 2025-06-03 09:46:03,613 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 05:46:14] 2025-06-03 09:46:03,613 | INFO     | update_server=False
[2025-06-03 05:46:14] 2025-06-03 09:46:03,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 05:46:14] 2025-06-03 09:46:03,614 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 05:46:14] 2025-06-03 09:46:03,614 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:46:14] 2025-06-03 09:46:03,614 | INFO     | aborting loop
[2025-06-03 05:46:14] 2025-06-03 09:46:03,881 | INFO     | all payload control threads have been joined
[2025-06-03 05:46:14] 2025-06-03 09:46:04,121 | INFO     | all job control threads have been joined
[2025-06-03 05:46:14] 2025-06-03 09:46:04,176 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 05:46:14] 2025-06-03 09:46:04,323 | INFO     | all data control threads have been joined
[2025-06-03 05:46:14] 2025-06-03 09:46:04,502 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 05:46:14] 2025-06-03 09:46:04,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 05:46:14] 2025-06-03 09:46:04,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 05:46:14] 2025-06-03 09:46:04,619 | INFO     | [job] retrieve thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:04,620 | INFO     | [job] job monitor thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:04,818 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:04,883 | INFO     | [payload] control thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:04,910 | INFO     | [job] validate thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:04,994 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:05,118 | INFO     | [payload] failed_post thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:05,128 | INFO     | [job] control thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:05,329 | INFO     | [data] control thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:05,367 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:05,594 | INFO     | [payload] validate_post thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:05,899 | INFO     | [data] copytool_in thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:06,103 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:06,182 | INFO     | [data] copytool_out thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:06,353 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:46:14] 2025-06-03 09:46:07,357 | INFO     | [job] queue monitor thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:07,620 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 05:46:14] 2025-06-03 09:46:09,248 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140155049428800)>', '<ExcThread(monitor, started 140154547189504)>']
[2025-06-03 05:46:14] 2025-06-03 09:46:09,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 05:46:14] 2025-06-03 09:46:09,524 | INFO     | [monitor] control thread has ended
[2025-06-03 05:46:14] 2025-06-03 09:46:14,275 | INFO     | all workflow threads have been joined
[2025-06-03 05:46:14] 2025-06-03 09:46:14,275 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 05:46:14] 2025-06-03 09:46:14,276 | INFO     | traces error code: 0
[2025-06-03 05:46:14] 2025-06-03 09:46:14,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 05:46:14] 2025-06-03 09:46:14,440 [wrapper] ==== pilot stdout END ====
[2025-06-03 05:46:14] 2025-06-03 09:46:14,444 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 05:46:14] 2025-06-03 09:46:14,447 [wrapper] pilotpid: 3562852
[2025-06-03 05:46:14] 2025-06-03 09:46:14,450 [wrapper] Pilot exit status: 0
[2025-06-03 05:46:14] 2025-06-03 09:46:14,460 [wrapper] pandaids: 6677441238
[2025-06-03 05:46:14] 2025-06-03 09:46:14,569 [wrapper] cleanup supervisor_pilot 4186123 3562853
[2025-06-03 05:46:14] 2025-06-03 09:46:14,571 [wrapper] Test setup, not cleaning
[2025-06-03 05:46:14] 2025-06-03 09:46:14,574 [wrapper] apfmon messages muted
[2025-06-03 05:46:14] 2025-06-03 09:46:14,577 [wrapper] ==== wrapper stdout END ====
[2025-06-03 05:46:14] 2025-06-03 09:46:14,580 [wrapper] ==== wrapper stderr END ====
[2025-06-03 05:46:14]  *** Error codes and diagnostics ***
[2025-06-03 05:46:14]     "exeErrorCode": 0,
[2025-06-03 05:46:14]     "exeErrorDiag": "",
[2025-06-03 05:46:14]     "pilotErrorCode": 0,
[2025-06-03 05:46:14]     "pilotErrorDiag": "",
[2025-06-03 05:46:14]  *** Listing of results directory ***
[2025-06-03 05:46:14] total 391740
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas    495897 Jun  2 20:46 pilot3.tar.gz
[2025-06-03 05:46:14] -rwx------. 1 boincer umatlas     37140 Jun  2 20:55 runpilot2-wrapper.sh
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas      5111 Jun  2 20:55 queuedata.json
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas       100 Jun  3 04:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 05:46:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 04:40 run_atlas
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas       105 Jun  3 04:40 job.xml
[2025-06-03 05:46:14] -rw-r--r--. 2 boincer umatlas 215127386 Jun  3 04:40 EVNT.45006593._000627.pool.root.1
[2025-06-03 05:46:14] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 04:40 start_atlas.sh
[2025-06-03 05:46:14] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 04:40 shared
[2025-06-03 05:46:14] -rw-r--r--. 2 boincer umatlas    508879 Jun  3 04:40 input.tar.gz
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas         0 Jun  3 04:40 boinc_lockfile
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas      2524 Jun  3 04:40 pandaJob.out
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas    985498 Jun  3 04:40 agis_schedconf.cvmfs.json
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas   1603667 Jun  3 04:40 agis_ddmendpoints.agis.ALL.json
[2025-06-03 05:46:14] drwx------. 4 boincer umatlas      4096 Jun  3 04:40 pilot3
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas      6935 Jun  3 05:36 init_data.xml
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas 180820344 Jun  3 05:45 HITS.45006595._015660.pool.root.1
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas       529 Jun  3 05:45 boinc_task_state.xml
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas        95 Jun  3 05:45 pilot_heartbeat.json
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas      1029 Jun  3 05:45 memory_monitor_summary.json
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas    289792 Jun  3 05:45 log.45006595._015660.job.log.tgz.1
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas      7683 Jun  3 05:46 heartbeat.json
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 05:46 boinc_mmap_file
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas        27 Jun  3 05:46 wrapper_checkpoint.txt
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas      4353 Jun  3 05:46 pilotlog.txt
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas    392534 Jun  3 05:46 log.45006595._015660.job.log.1
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas       357 Jun  3 05:46 output.list
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas       620 Jun  3 05:46 runtime_log
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas    696320 Jun  3 05:46 result.tar.gz
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas      8654 Jun  3 05:46 runtime_log.err
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas       650 Jun  3 05:46 bHQODmS7Ug7n9Rq4apOajLDm4fhM0noT9bVof3QYDmH1WKDmi2R45n.diag
[2025-06-03 05:46:14] -rw-r--r--. 1 boincer umatlas     21235 Jun  3 05:46 stderr.txt
[2025-06-03 05:46:14] HITS file was successfully produced:
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas 180820344 Jun  3 05:45 shared/HITS.pool.root.1
[2025-06-03 05:46:14]  *** Contents of shared directory: ***
[2025-06-03 05:46:14] total 387876
[2025-06-03 05:46:14] -rw-r--r--. 2 boincer umatlas 215127386 Jun  3 04:40 ATLAS.root_0
[2025-06-03 05:46:14] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 04:40 start_atlas.sh
[2025-06-03 05:46:14] -rw-r--r--. 2 boincer umatlas    508879 Jun  3 04:40 input.tar.gz
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas 180820344 Jun  3 05:45 HITS.pool.root.1
[2025-06-03 05:46:14] -rw-------. 1 boincer umatlas    696320 Jun  3 05:46 result.tar.gz
05:46:16 (3558388): run_atlas exited; CPU time 25690.145713
05:46:16 (3558388): called boinc_finish(0)

</stderr_txt>
]]>

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