Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:28:56 (16371): wrapper (7.7.26015): starting
18:28:56 (16371): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 18:28:56] Arguments: --nthreads 8
[2025-06-03 18:28:56] Threads: 8
[2025-06-03 18:28:56] Checking for CVMFS
[2025-06-03 18:28:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 18:28:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 18:28:56] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 18:28:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 18:28:56] 2.11.2.0 17834 32027 90088 146746 0 272 19147095 25165825 2960 130560 0 17518554 99.795 19896050 2118 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 18:28:56] CVMFS is ok
[2025-06-03 18:28:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 18:28:56] Checking for apptainer binary...
[2025-06-03 18:28:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 18:28:56] Running /usr/bin/apptainer --version
[2025-06-03 18:28:56] apptainer version 1.3.2-1.el7
[2025-06-03 18:28:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 18:28:58] cg-vwn466.simple-grid.lan
[2025-06-03 18:28:58] apptainer works
[2025-06-03 18:28:58] Set ATHENA_PROC_NUMBER=8
[2025-06-03 18:28:58] Set ATHENA_CORE_NUMBER=8
[2025-06-03 18:28:58] Starting ATLAS job with PandaID=6677471997
[2025-06-03 18:28:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:10:00]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:10:00] 2025-06-03 19:56:35,751 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:10:00] 2025-06-03 19:56:35,751 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:10:00] 2025-06-03 19:56:35,751 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:10:00] 2025-06-03 19:56:35,755 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:10:00] 2025-06-03 19:56:35,756 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 23:10:00] 2025-06-03 19:56:35,757 | INFO     | sum of deviations: 16211712214.000006
[2025-06-03 23:10:00] 2025-06-03 19:56:35,757 | INFO     | mean x: 1748974364.0
[2025-06-03 23:10:00] 2025-06-03 19:56:35,758 | INFO     | mean y: 2477059.850746269
[2025-06-03 23:10:00] 2025-06-03 19:56:35,758 | INFO     | -- intersect: -11257992033.280043
[2025-06-03 23:10:00] 2025-06-03 19:56:35,758 | INFO     | intersect: -11257992033.280043
[2025-06-03 23:10:00] 2025-06-03 19:56:35,758 | INFO     | chi2: 2.455725225333321
[2025-06-03 23:10:00] 2025-06-03 19:56:35,758 | INFO     | sum of square deviations: 2334722845.0
[2025-06-03 23:10:00] 2025-06-03 19:56:35,760 | INFO     | sum of deviations: 29228515664.500027
[2025-06-03 23:10:00] 2025-06-03 19:56:35,760 | INFO     | mean x: 1748974211.5
[2025-06-03 23:10:00] 2025-06-03 19:56:35,760 | INFO     | mean y: 2487668.5561224488
[2025-06-03 23:10:00] 2025-06-03 19:56:35,760 | INFO     | -- intersect: -21893010654.558258
[2025-06-03 23:10:00] 2025-06-03 19:56:35,760 | INFO     | intersect: -21893010654.558258
[2025-06-03 23:10:00] 2025-06-03 19:56:35,761 | INFO     | chi2: 1.6858297747485531
[2025-06-03 23:10:00] 2025-06-03 19:56:35,761 | INFO     | current chi2=1.6858297747485531 (change=31.351042154167242 %)
[2025-06-03 23:10:00] 2025-06-03 19:56:35,761 | INFO     | sum of square deviations: 2160561440.0
[2025-06-03 23:10:00] 2025-06-03 19:56:35,767 | INFO     | sum of deviations: 28687215603.0
[2025-06-03 23:10:00] 2025-06-03 19:56:35,768 | INFO     | mean x: 1748974059.0
[2025-06-03 23:10:00] 2025-06-03 19:56:35,768 | INFO     | mean y: 2487194.4869109946
[2025-06-03 23:10:00] 2025-06-03 19:56:35,768 | INFO     | -- intersect: -23219808170.82658
[2025-06-03 23:10:00] 2025-06-03 19:56:35,768 | INFO     | intersect: -23219808170.82658
[2025-06-03 23:10:00] 2025-06-03 19:56:35,768 | INFO     | chi2: 1.6867072936428626
[2025-06-03 23:10:00] 2025-06-03 19:56:35,768 | INFO     | current chi2=1.6867072936428626 (change=-0.05205263944519082 %)
[2025-06-03 23:10:00] 2025-06-03 19:56:35,769 | INFO     | right removable region: 190
[2025-06-03 23:10:00] 2025-06-03 19:56:35,769 | INFO     | sum of square deviations: 2334722845.0
[2025-06-03 23:10:00] 2025-06-03 19:56:35,770 | INFO     | sum of deviations: -20546881442.0
[2025-06-03 23:10:00] 2025-06-03 19:56:35,770 | INFO     | mean x: 1748974516.5
[2025-06-03 23:10:00] 2025-06-03 19:56:35,770 | INFO     | mean y: 2507422.8673469387
[2025-06-03 23:10:00] 2025-06-03 19:56:35,771 | INFO     | -- intersect: 15394472303.223316
[2025-06-03 23:10:00] 2025-06-03 19:56:35,771 | INFO     | intersect: 15394472303.223316
[2025-06-03 23:10:00] 2025-06-03 19:56:35,771 | INFO     | chi2: 0.8441276748667841
[2025-06-03 23:10:00] 2025-06-03 19:56:35,771 | INFO     | current chi2=0.8441276748667841 (change=65.62613495358754 %)
[2025-06-03 23:10:00] 2025-06-03 19:56:35,771 | INFO     | sum of square deviations: 2160561440.0
[2025-06-03 23:10:00] 2025-06-03 19:56:35,773 | INFO     | sum of deviations: -24771618039.000004
[2025-06-03 23:10:00] 2025-06-03 19:56:35,773 | INFO     | mean x: 1748974669.0
[2025-06-03 23:10:00] 2025-06-03 19:56:35,773 | INFO     | mean y: 2511073.2146596857
[2025-06-03 23:10:00] 2025-06-03 19:56:35,773 | INFO     | -- intersect: 20055137977.615242
[2025-06-03 23:10:00] 2025-06-03 19:56:35,773 | INFO     | intersect: 20055137977.615242
[2025-06-03 23:10:00] 2025-06-03 19:56:35,773 | INFO     | chi2: 0.8029164503878945
[2025-06-03 23:10:00] 2025-06-03 19:56:35,773 | INFO     | current chi2=0.8029164503878945 (change=4.882107968488692 %)
[2025-06-03 23:10:00] 2025-06-03 19:56:35,773 | INFO     | left removable region: 20
[2025-06-03 23:10:00] 2025-06-03 19:56:35,774 | INFO     | sum of square deviations: 1523386702.5
[2025-06-03 23:10:00] 2025-06-03 19:56:35,775 | INFO     | sum of deviations: -10282612223.500002
[2025-06-03 23:10:00] 2025-06-03 19:56:35,775 | INFO     | mean x: 1748974638.5
[2025-06-03 23:10:00] 2025-06-03 19:56:35,775 | INFO     | mean y: 2523165.629411765
[2025-06-03 23:10:00] 2025-06-03 19:56:35,775 | INFO     | -- intersect: 11807817229.781582
[2025-06-03 23:10:00] 2025-06-03 19:56:35,775 | INFO     | intersect: 11807817229.781582
[2025-06-03 23:10:00] 2025-06-03 19:56:35,775 | INFO     | chi2: 0.010022818694881705
[2025-06-03 23:10:00] 2025-06-03 19:56:35,776 | INFO     | -- intersect: 11807817229.781582
[2025-06-03 23:10:00] 2025-06-03 19:56:35,776 | INFO     | current memory leak: -6.75 B/s (using 170 data points, chi2=0.01)
[2025-06-03 23:10:00] 2025-06-03 19:56:35,776 | INFO     | ..............................
[2025-06-03 23:10:00] 2025-06-03 19:56:35,776 | INFO     | . Timing measurements:
[2025-06-03 23:10:00] 2025-06-03 19:56:35,777 | INFO     | . get job = 0 s
[2025-06-03 23:10:00] 2025-06-03 19:56:35,777 | INFO     | . initial setup = 3 s
[2025-06-03 23:10:00] 2025-06-03 19:56:35,777 | INFO     | . payload setup = 27 s
[2025-06-03 23:10:00] 2025-06-03 19:56:35,777 | INFO     | . stage-in = 0 s
[2025-06-03 23:10:00] 2025-06-03 19:56:35,777 | INFO     | . payload execution = 12276 s
[2025-06-03 23:10:00] 2025-06-03 19:56:35,777 | INFO     | . stage-out = 3 s
[2025-06-03 23:10:00] 2025-06-03 19:56:35,777 | INFO     | . log creation = 1 s
[2025-06-03 23:10:00] 2025-06-03 19:56:35,777 | INFO     | ..............................
[2025-06-03 23:10:00] 2025-06-03 19:56:36,077 | INFO     | 
[2025-06-03 23:10:00] 2025-06-03 19:56:36,078 | INFO     | job summary report
[2025-06-03 23:10:00] 2025-06-03 19:56:36,078 | INFO     | --------------------------------------------------
[2025-06-03 23:10:00] 2025-06-03 19:56:36,078 | INFO     | PanDA job id: 6677471997
[2025-06-03 23:10:00] 2025-06-03 19:56:36,078 | INFO     | task id: 45006595
[2025-06-03 23:10:00] 2025-06-03 19:56:36,078 | INFO     | errors: (none)
[2025-06-03 23:10:00] 2025-06-03 19:56:36,078 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:10:00] 2025-06-03 19:56:36,078 | INFO     | pilot state: finished 
[2025-06-03 23:10:00] 2025-06-03 19:56:36,078 | INFO     | transexitcode: 0
[2025-06-03 23:10:00] 2025-06-03 19:56:36,078 | INFO     | exeerrorcode: 0
[2025-06-03 23:10:00] 2025-06-03 19:56:36,079 | INFO     | exeerrordiag: 
[2025-06-03 23:10:00] 2025-06-03 19:56:36,079 | INFO     | exitcode: 0
[2025-06-03 23:10:00] 2025-06-03 19:56:36,079 | INFO     | exitmsg: OK
[2025-06-03 23:10:00] 2025-06-03 19:56:36,079 | INFO     | cpuconsumptiontime: 46896 s
[2025-06-03 23:10:00] 2025-06-03 19:56:36,079 | INFO     | nevents: 400
[2025-06-03 23:10:00] 2025-06-03 19:56:36,079 | INFO     | neventsw: 0
[2025-06-03 23:10:00] 2025-06-03 19:56:36,079 | INFO     | pid: 3005
[2025-06-03 23:10:00] 2025-06-03 19:56:36,079 | INFO     | pgrp: 3005
[2025-06-03 23:10:00] 2025-06-03 19:56:36,079 | INFO     | corecount: 8
[2025-06-03 23:10:00] 2025-06-03 19:56:36,079 | INFO     | event service: False
[2025-06-03 23:10:00] 2025-06-03 19:56:36,079 | INFO     | sizes: {0: 2404955, 1: 2405210, 12: 2405210, 18: 2405444, 23: 2405472, 12307: 2434581, 12311: 2443522, 12313: 2443578, 12398: 2443748}
[2025-06-03 23:10:00] 2025-06-03 19:56:36,080 | INFO     | --------------------------------------------------
[2025-06-03 23:10:00] 2025-06-03 19:56:36,080 | INFO     | 
[2025-06-03 23:10:00] 2025-06-03 19:56:36,080 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-03 23:10:00] 2025-06-03 19:56:36,493 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,493 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,493 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,493 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,493 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,493 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,493 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:10:00] 2025-06-03 19:56:36,494 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,495 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:10:00] 2025-06-03 19:56:36,495 | INFO     | job 6677471997 has completed (purged errors)
[2025-06-03 23:10:00] 2025-06-03 19:56:36,495 | INFO     | overall cleanup function is called
[2025-06-03 23:10:00] 2025-06-03 19:56:37,503 | INFO     | --- collectZombieJob: --- 10, [3005]
[2025-06-03 23:10:00] 2025-06-03 19:56:37,504 | INFO     | zombie collector waiting for pid 3005
[2025-06-03 23:10:00] 2025-06-03 19:56:37,504 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:10:00] 2025-06-03 19:56:37,504 | INFO     | collected zombie processes
[2025-06-03 23:10:00] 2025-06-03 19:56:37,504 | INFO     | will attempt to kill all subprocesses of pid=3005
[2025-06-03 23:10:00] 2025-06-03 19:56:37,612 | INFO     | process IDs to be killed: [3005] (in reverse order)
[2025-06-03 23:10:00] 2025-06-03 19:56:38,342 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:10:00] 2025-06-03 19:56:38,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:10:00] 2025-06-03 19:56:38,345 | INFO     | did not find any defunct processes belonging to 3005
[2025-06-03 23:10:00] 2025-06-03 19:56:38,348 | INFO     | did not find any defunct processes belonging to 3005
[2025-06-03 23:10:00] 2025-06-03 19:56:38,349 | INFO     | ready for new job
[2025-06-03 23:10:00] 2025-06-03 19:56:38,349 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:10:00] 2025-06-03 19:56:38,351 | INFO     | **************************************
[2025-06-03 23:10:00] 2025-06-03 19:56:38,351 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:10:00] 2025-06-03 19:56:38,351 | INFO     | **************************************
[2025-06-03 23:10:00] 2025-06-03 19:56:38,351 | INFO     | 
[2025-06-03 23:10:00] 2025-06-03 19:56:38,352 | INFO     | pilot is running in a VM
[2025-06-03 23:10:00] 2025-06-03 19:56:38,352 | INFO     | architecture information:
[2025-06-03 23:10:00] 2025-06-03 19:56:38,359 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:10:00] 2025-06-03 19:56:38,488 | INFO     | cat /etc/os-release:
[2025-06-03 23:10:00] NAME="CentOS Linux"
[2025-06-03 23:10:00] VERSION="7 (Core)"
[2025-06-03 23:10:00] ID="centos"
[2025-06-03 23:10:00] ID_LIKE="rhel fedora"
[2025-06-03 23:10:00] VERSION_ID="7"
[2025-06-03 23:10:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:10:00] ANSI_COLOR="0;31"
[2025-06-03 23:10:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:10:00] HOME_URL="https://www.centos.org/"
[2025-06-03 23:10:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:10:00] 
[2025-06-03 23:10:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:10:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:10:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:10:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:10:00] 
[2025-06-03 23:10:00] 2025-06-03 19:56:38,488 | INFO     | **************************************
[2025-06-03 23:10:00] 2025-06-03 19:56:38,992 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-03 23:10:00] 2025-06-03 19:56:39,261 | INFO     | sufficient remaining disk space (497185456128 B)
[2025-06-03 23:10:00] 2025-06-03 19:56:39,262 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:10:00] 2025-06-03 19:56:39,262 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:10:00] 2025-06-03 19:56:39,262 | INFO     | update_server=False
[2025-06-03 23:10:00] 2025-06-03 19:56:39,262 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:10:00] 2025-06-03 19:56:39,263 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:10:00] 2025-06-03 19:56:39,264 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:10:00] 2025-06-03 19:56:39,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:10:00] 2025-06-03 19:56:39,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:10:00] 2025-06-03 19:56:39,267 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:10:00] 2025-06-03 19:56:39,404 | INFO     | all job control threads have been joined
[2025-06-03 23:10:00] 2025-06-03 19:56:39,427 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 23:10:00] 2025-06-03 19:56:39,428 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 23:10:00] 2025-06-03 19:56:39,428 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:10:00] 2025-06-03 19:56:39,428 | INFO     | will abort loop
[2025-06-03 23:10:00] 2025-06-03 19:56:39,815 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:10:00] 2025-06-03 19:56:39,953 | INFO     | all data control threads have been joined
[2025-06-03 23:10:00] 2025-06-03 19:56:40,247 | INFO     | all payload control threads have been joined
[2025-06-03 23:10:00] 2025-06-03 19:56:40,271 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:40,313 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:40,409 | INFO     | [job] control thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:40,433 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:40,470 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:40,554 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:40,605 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:40,958 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:10:00] 2025-06-03 19:56:40,959 | INFO     | [data] control thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:41,067 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:41,169 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:41,174 | INFO     | [job] validate thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:41,253 | INFO     | [payload] control thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:41,487 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:41,823 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:41,963 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:43,275 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:10:00] 2025-06-03 19:56:43,702 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538603607872)>', '<ExcThread(monitor, started 140538385102592)>']
[2025-06-03 23:10:00] 2025-06-03 19:56:44,293 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:10:00] 2025-06-03 19:56:44,294 | INFO     | [monitor] control thread has ended
[2025-06-03 23:10:00] 2025-06-03 19:56:48,728 | INFO     | all workflow threads have been joined
[2025-06-03 23:10:00] 2025-06-03 19:56:48,729 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:10:00] 2025-06-03 19:56:48,729 | INFO     | traces error code: 0
[2025-06-03 23:10:00] 2025-06-03 19:56:48,729 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:10:00] 2025-06-03 19:56:49,081 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:10:00] 2025-06-03 19:56:49,123 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:10:00] 2025-06-03 19:56:49,165 [wrapper] pilotpid: 20241
[2025-06-03 23:10:00] 2025-06-03 19:56:49,207 [wrapper] Pilot exit status: 0
[2025-06-03 23:10:00] 2025-06-03 19:56:49,684 [wrapper] pandaids: 6677471997
[2025-06-03 23:10:00] 2025-06-03 19:56:50,528 [wrapper] cleanup supervisor_pilot  6816 20242
[2025-06-03 23:10:00] 2025-06-03 19:56:50,655 [wrapper] Test setup, not cleaning
[2025-06-03 23:10:00] 2025-06-03 19:56:50,721 [wrapper] apfmon messages muted
[2025-06-03 23:10:00] 2025-06-03 19:56:50,815 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:10:00] 2025-06-03 19:56:50,898 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:10:00]  *** Error codes and diagnostics ***
[2025-06-03 23:10:00]     "exeErrorCode": 0,
[2025-06-03 23:10:00]     "exeErrorDiag": "",
[2025-06-03 23:10:00]     "pilotErrorCode": 0,
[2025-06-03 23:10:00]     "pilotErrorDiag": "",
[2025-06-03 23:10:00]  *** Listing of results directory ***
[2025-06-03 23:10:00] total 401280
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc    495897 Jun  3 07:38 pilot3.tar.gz
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc      5111 Jun  3 07:44 queuedata.json
[2025-06-03 23:10:00] -rwx------. 1 boinc boinc     37140 Jun  3 07:48 runpilot2-wrapper.sh
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc       100 Jun  3 18:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:10:00] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 18:28 run_atlas
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc       105 Jun  3 18:28 job.xml
[2025-06-03 23:10:00] -rw-r--r--. 2 boinc boinc 219039932 Jun  3 18:28 EVNT.45006593._000854.pool.root.1
[2025-06-03 23:10:00] drwxrwx--x. 2 boinc boinc        68 Jun  3 18:28 shared
[2025-06-03 23:10:00] -rw-r--r--. 2 boinc boinc    508881 Jun  3 18:28 input.tar.gz
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc      6392 Jun  3 18:28 init_data.xml
[2025-06-03 23:10:00] -rw-r--r--. 2 boinc boinc     15093 Jun  3 18:28 start_atlas.sh
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc         0 Jun  3 18:28 boinc_lockfile
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc      2524 Jun  3 18:28 pandaJob.out
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc    982716 Jun  3 18:29 agis_schedconf.cvmfs.json
[2025-06-03 23:10:00] drwx------. 4 boinc boinc      4096 Jun  3 18:29 pilot3
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc 185120344 Jun  3 21:53 HITS.45006595._021354.pool.root.1
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc       531 Jun  3 21:53 boinc_task_state.xml
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc      1018 Jun  3 21:55 memory_monitor_summary.json
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc   1603667 Jun  3 21:55 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc    385940 Jun  3 21:55 log.45006595._021354.job.log.tgz.1
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc        95 Jun  3 21:56 pilot_heartbeat.json
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc      7691 Jun  3 21:56 heartbeat.json
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc      4725 Jun  3 21:56 pilotlog.txt
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc   1078738 Jun  3 21:56 log.45006595._021354.job.log.1
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc       357 Jun  3 21:56 output.list
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc       620 Jun  3 21:56 runtime_log
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc   1484800 Jun  3 21:56 result.tar.gz
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc       656 Jun  3 21:56 sdQLDmOgZg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYIiKDm4eM5Gm.diag
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc      8659 Jun  3 21:56 runtime_log.err
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc      8192 Jun  3 23:10 boinc_mmap_file
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc        28 Jun  3 23:10 wrapper_checkpoint.txt
[2025-06-03 23:10:00] -rw-r--r--. 1 boinc boinc     20514 Jun  3 23:10 stderr.txt
[2025-06-03 23:10:00] HITS file was successfully produced:
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc 185120344 Jun  3 21:53 shared/HITS.pool.root.1
[2025-06-03 23:10:00]  *** Contents of shared directory: ***
[2025-06-03 23:10:00] total 396660
[2025-06-03 23:10:00] -rw-r--r--. 2 boinc boinc 219039932 Jun  3 18:28 ATLAS.root_0
[2025-06-03 23:10:00] -rw-r--r--. 2 boinc boinc    508881 Jun  3 18:28 input.tar.gz
[2025-06-03 23:10:00] -rw-r--r--. 2 boinc boinc     15093 Jun  3 18:28 start_atlas.sh
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc 185120344 Jun  3 21:53 HITS.pool.root.1
[2025-06-03 23:10:00] -rw-------. 1 boinc boinc   1484800 Jun  3 21:56 result.tar.gz
23:10:02 (16371): run_atlas exited; CPU time 47039.161460
23:10:02 (16371): called boinc_finish(0)

</stderr_txt>
]]>

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