Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:54:57 (6992): wrapper (7.7.26015): starting
18:54:57 (6992): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 18:54:57] Arguments: --nthreads 8
[2025-06-03 18:54:57] Threads: 8
[2025-06-03 18:54:57] Checking for CVMFS
[2025-06-03 18:54:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 18:54:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 18:54:58] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 18:55:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 18:55:00] 2.11.2.0 32728 32023 91884 146749 2 16 23456199 25165825 4290 130560 0 16446631 99.796 18748994 2229 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 18:55:00] CVMFS is ok
[2025-06-03 18:55:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 18:55:00] Checking for apptainer binary...
[2025-06-03 18:55:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 18:55:00] Running /usr/bin/apptainer --version
[2025-06-03 18:55:00] apptainer version 1.3.2-1.el7
[2025-06-03 18:55:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 18:55:05] cg-vwn337.simple-grid.lan
[2025-06-03 18:55:05] apptainer works
[2025-06-03 18:55:05] Set ATHENA_PROC_NUMBER=8
[2025-06-03 18:55:05] Set ATHENA_CORE_NUMBER=8
[2025-06-03 18:55:06] Starting ATLAS job with PandaID=6677455863
[2025-06-03 18:55:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:01:16]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:01:16] 2025-06-03 20:46:14,808 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:01:16] 2025-06-03 20:46:14,808 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:01:16] 2025-06-03 20:46:14,813 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:01:16] 2025-06-03 20:46:14,813 | INFO     | sum of square deviations: 3081657780.0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,815 | INFO     | sum of deviations: 77730643239.99998
[2025-06-03 23:01:16] 2025-06-03 20:46:14,815 | INFO     | mean x: 1748976932.0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,816 | INFO     | mean y: 2426523.269767442
[2025-06-03 23:01:16] 2025-06-03 20:46:14,816 | INFO     | -- intersect: -44113147509.185486
[2025-06-03 23:01:16] 2025-06-03 20:46:14,816 | INFO     | intersect: -44113147509.185486
[2025-06-03 23:01:16] 2025-06-03 20:46:14,816 | INFO     | chi2: 7.905231825453075
[2025-06-03 23:01:16] 2025-06-03 20:46:14,817 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 23:01:16] 2025-06-03 20:46:14,818 | INFO     | sum of deviations: 89902177163.0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,818 | INFO     | mean x: 1748976779.5
[2025-06-03 23:01:16] 2025-06-03 20:46:14,819 | INFO     | mean y: 2435167.819047619
[2025-06-03 23:01:16] 2025-06-03 20:46:14,819 | INFO     | -- intersect: -54753070321.6771
[2025-06-03 23:01:16] 2025-06-03 20:46:14,819 | INFO     | intersect: -54753070321.6771
[2025-06-03 23:01:16] 2025-06-03 20:46:14,819 | INFO     | chi2: 7.216987829318709
[2025-06-03 23:01:16] 2025-06-03 20:46:14,819 | INFO     | current chi2=7.216987829318709 (change=8.70618359247068 %)
[2025-06-03 23:01:16] 2025-06-03 20:46:14,819 | INFO     | right removable region: 209
[2025-06-03 23:01:16] 2025-06-03 20:46:14,820 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 23:01:16] 2025-06-03 20:46:14,821 | INFO     | sum of deviations: 3209686959.000002
[2025-06-03 23:01:16] 2025-06-03 20:46:14,821 | INFO     | mean x: 1748977084.5
[2025-06-03 23:01:16] 2025-06-03 20:46:14,822 | INFO     | mean y: 2480588.219047619
[2025-06-03 23:01:16] 2025-06-03 20:46:14,822 | INFO     | -- intersect: -1952400462.4671268
[2025-06-03 23:01:16] 2025-06-03 20:46:14,822 | INFO     | intersect: -1952400462.4671268
[2025-06-03 23:01:16] 2025-06-03 20:46:14,822 | INFO     | chi2: 2.8576647978116596
[2025-06-03 23:01:16] 2025-06-03 20:46:14,822 | INFO     | current chi2=2.8576647978116596 (change=63.85096780323861 %)
[2025-06-03 23:01:16] 2025-06-03 20:46:14,823 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,824 | INFO     | sum of deviations: -41125047710.0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,824 | INFO     | mean x: 1748977237.0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,824 | INFO     | mean y: 2514193.043902439
[2025-06-03 23:01:16] 2025-06-03 20:46:14,824 | INFO     | -- intersect: 26927835783.548607
[2025-06-03 23:01:16] 2025-06-03 20:46:14,824 | INFO     | intersect: 26927835783.548607
[2025-06-03 23:01:16] 2025-06-03 20:46:14,825 | INFO     | chi2: 0.982507744461154
[2025-06-03 23:01:16] 2025-06-03 20:46:14,825 | INFO     | current chi2=0.982507744461154 (change=65.61850972816903 %)
[2025-06-03 23:01:16] 2025-06-03 20:46:14,825 | INFO     | sum of square deviations: 2480604650.0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,827 | INFO     | sum of deviations: -43983902349.49999
[2025-06-03 23:01:16] 2025-06-03 20:46:14,827 | INFO     | mean x: 1748977389.5
[2025-06-03 23:01:16] 2025-06-03 20:46:14,827 | INFO     | mean y: 2516429.215
[2025-06-03 23:01:16] 2025-06-03 20:46:14,827 | INFO     | -- intersect: 31013846957.54059
[2025-06-03 23:01:16] 2025-06-03 20:46:14,827 | INFO     | intersect: 31013846957.54059
[2025-06-03 23:01:16] 2025-06-03 20:46:14,828 | INFO     | chi2: 0.9409888326020304
[2025-06-03 23:01:16] 2025-06-03 20:46:14,828 | INFO     | current chi2=0.9409888326020304 (change=4.225810136681845 %)
[2025-06-03 23:01:16] 2025-06-03 20:46:14,828 | INFO     | left removable region: 30
[2025-06-03 23:01:16] 2025-06-03 20:46:14,828 | INFO     | sum of square deviations: 1778377530.0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,830 | INFO     | sum of deviations: -11045057537.0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,831 | INFO     | mean x: 1748977664.0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,831 | INFO     | mean y: 2510498.5251396648
[2025-06-03 23:01:16] 2025-06-03 20:46:14,831 | INFO     | -- intersect: 10864972829.461054
[2025-06-03 23:01:16] 2025-06-03 20:46:14,831 | INFO     | intersect: 10864972829.461054
[2025-06-03 23:01:16] 2025-06-03 20:46:14,831 | INFO     | chi2: 0.09134955926062212
[2025-06-03 23:01:16] 2025-06-03 20:46:14,831 | INFO     | -- intersect: 10864972829.461054
[2025-06-03 23:01:16] 2025-06-03 20:46:14,832 | INFO     | current memory leak: -6.21 B/s (using 179 data points, chi2=0.09)
[2025-06-03 23:01:16] 2025-06-03 20:46:14,832 | INFO     | ..............................
[2025-06-03 23:01:16] 2025-06-03 20:46:14,832 | INFO     | . Timing measurements:
[2025-06-03 23:01:16] 2025-06-03 20:46:14,833 | INFO     | . get job = 0 s
[2025-06-03 23:01:16] 2025-06-03 20:46:14,833 | INFO     | . initial setup = 9 s
[2025-06-03 23:01:16] 2025-06-03 20:46:14,833 | INFO     | . payload setup = 162 s
[2025-06-03 23:01:16] 2025-06-03 20:46:14,833 | INFO     | . stage-in = 0 s
[2025-06-03 23:01:16] 2025-06-03 20:46:14,833 | INFO     | . payload execution = 13213 s
[2025-06-03 23:01:16] 2025-06-03 20:46:14,833 | INFO     | . stage-out = 3 s
[2025-06-03 23:01:16] 2025-06-03 20:46:14,833 | INFO     | . log creation = 1 s
[2025-06-03 23:01:16] 2025-06-03 20:46:14,833 | INFO     | ..............................
[2025-06-03 23:01:16] 2025-06-03 20:46:14,997 | INFO     | 
[2025-06-03 23:01:16] 2025-06-03 20:46:14,997 | INFO     | job summary report
[2025-06-03 23:01:16] 2025-06-03 20:46:14,997 | INFO     | --------------------------------------------------
[2025-06-03 23:01:16] 2025-06-03 20:46:14,997 | INFO     | PanDA job id: 6677455863
[2025-06-03 23:01:16] 2025-06-03 20:46:14,997 | INFO     | task id: 45006595
[2025-06-03 23:01:16] 2025-06-03 20:46:14,997 | INFO     | errors: (none)
[2025-06-03 23:01:16] 2025-06-03 20:46:14,997 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | pilot state: finished 
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | transexitcode: 0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | exeerrorcode: 0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | exeerrordiag: 
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | exitcode: 0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | exitmsg: OK
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | cpuconsumptiontime: 48654 s
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | nevents: 400
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | neventsw: 0
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | pid: 25053
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | pgrp: 25053
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | corecount: 8
[2025-06-03 23:01:16] 2025-06-03 20:46:14,998 | INFO     | event service: False
[2025-06-03 23:01:16] 2025-06-03 20:46:14,999 | INFO     | sizes: {0: 2404904, 1: 2405159, 12: 2405159, 23: 2405187, 33: 2405215, 44: 2405271, 55: 2405427, 66: 2405455, 76: 2405483, 87: 2405539, 93: 2405773, 98: 2406081, 1
[2025-06-03 23:01:16] 2025-06-03 20:46:14,999 | INFO     | --------------------------------------------------
[2025-06-03 23:01:16] 2025-06-03 20:46:14,999 | INFO     | 
[2025-06-03 23:01:16] 2025-06-03 20:46:14,999 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-03 23:01:16] 2025-06-03 20:46:15,527 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,528 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,528 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,528 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,528 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,528 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,528 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,528 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,528 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,529 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,529 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,529 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,529 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:01:16] 2025-06-03 20:46:15,529 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,530 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:01:16] 2025-06-03 20:46:15,530 | INFO     | job 6677455863 has completed (purged errors)
[2025-06-03 23:01:16] 2025-06-03 20:46:15,530 | INFO     | overall cleanup function is called
[2025-06-03 23:01:16] 2025-06-03 20:46:16,538 | INFO     | --- collectZombieJob: --- 10, [25053]
[2025-06-03 23:01:16] 2025-06-03 20:46:16,539 | INFO     | zombie collector waiting for pid 25053
[2025-06-03 23:01:16] 2025-06-03 20:46:16,539 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:01:16] 2025-06-03 20:46:16,539 | INFO     | collected zombie processes
[2025-06-03 23:01:16] 2025-06-03 20:46:16,539 | INFO     | will attempt to kill all subprocesses of pid=25053
[2025-06-03 23:01:16] 2025-06-03 20:46:16,675 | INFO     | process IDs to be killed: [25053] (in reverse order)
[2025-06-03 23:01:16] 2025-06-03 20:46:17,501 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:01:16] 2025-06-03 20:46:17,502 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:01:16] 2025-06-03 20:46:17,505 | INFO     | did not find any defunct processes belonging to 25053
[2025-06-03 23:01:16] 2025-06-03 20:46:17,509 | INFO     | did not find any defunct processes belonging to 25053
[2025-06-03 23:01:16] 2025-06-03 20:46:17,509 | INFO     | ready for new job
[2025-06-03 23:01:16] 2025-06-03 20:46:17,509 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:01:16] 2025-06-03 20:46:17,511 | INFO     | **************************************
[2025-06-03 23:01:16] 2025-06-03 20:46:17,512 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:01:16] 2025-06-03 20:46:17,512 | INFO     | **************************************
[2025-06-03 23:01:16] 2025-06-03 20:46:17,512 | INFO     | 
[2025-06-03 23:01:16] 2025-06-03 20:46:17,512 | INFO     | pilot is running in a VM
[2025-06-03 23:01:16] 2025-06-03 20:46:17,512 | INFO     | architecture information:
[2025-06-03 23:01:16] 2025-06-03 20:46:17,526 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:01:16] 2025-06-03 20:46:17,669 | INFO     | cat /etc/os-release:
[2025-06-03 23:01:16] NAME="CentOS Linux"
[2025-06-03 23:01:16] VERSION="7 (Core)"
[2025-06-03 23:01:16] ID="centos"
[2025-06-03 23:01:16] ID_LIKE="rhel fedora"
[2025-06-03 23:01:16] VERSION_ID="7"
[2025-06-03 23:01:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:01:16] ANSI_COLOR="0;31"
[2025-06-03 23:01:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:01:16] HOME_URL="https://www.centos.org/"
[2025-06-03 23:01:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:01:16] 
[2025-06-03 23:01:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:01:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:01:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:01:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:01:16] 
[2025-06-03 23:01:16] 2025-06-03 20:46:17,670 | INFO     | **************************************
[2025-06-03 23:01:16] 2025-06-03 20:46:18,174 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-03 23:01:16] 2025-06-03 20:46:18,417 | INFO     | sufficient remaining disk space (496792240128 B)
[2025-06-03 23:01:16] 2025-06-03 20:46:18,418 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:01:16] 2025-06-03 20:46:18,418 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:01:16] 2025-06-03 20:46:18,418 | INFO     | update_server=False
[2025-06-03 23:01:16] 2025-06-03 20:46:18,418 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:01:16] 2025-06-03 20:46:18,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:01:16] 2025-06-03 20:46:18,418 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:01:16] 2025-06-03 20:46:18,419 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:01:16] 2025-06-03 20:46:18,419 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:01:16] 2025-06-03 20:46:18,419 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:01:16] 2025-06-03 20:46:18,444 | INFO     | all payload control threads have been joined
[2025-06-03 23:01:16] 2025-06-03 20:46:18,579 | INFO     | all job control threads have been joined
[2025-06-03 23:01:16] 2025-06-03 20:46:18,627 | INFO     | all data control threads have been joined
[2025-06-03 23:01:16] 2025-06-03 20:46:18,669 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 23:01:16] 2025-06-03 20:46:18,670 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 23:01:16] 2025-06-03 20:46:18,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:01:16] 2025-06-03 20:46:18,670 | INFO     | will abort loop
[2025-06-03 23:01:16] 2025-06-03 20:46:18,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:01:16] 2025-06-03 20:46:19,424 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:19,434 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:19,451 | INFO     | [payload] control thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:19,586 | INFO     | [job] control thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:19,634 | INFO     | [data] control thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:19,675 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:19,964 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:20,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:01:16] 2025-06-03 20:46:20,097 | INFO     | [job] validate thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:20,315 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:20,479 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:20,813 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:20,818 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:20,883 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:21,020 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:22,428 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:29,469 | INFO     | job.realtimelogging is not enabled
[2025-06-03 23:01:16] 2025-06-03 20:46:30,476 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:01:16] 2025-06-03 20:46:31,511 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520095688512)>', '<ExcThread(monitor, started 140519510370048)>']
[2025-06-03 23:01:16] 2025-06-03 20:46:32,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:01:16] 2025-06-03 20:46:32,503 | INFO     | [monitor] control thread has ended
[2025-06-03 23:01:16] 2025-06-03 20:46:36,536 | INFO     | all workflow threads have been joined
[2025-06-03 23:01:16] 2025-06-03 20:46:36,537 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:01:16] 2025-06-03 20:46:36,537 | INFO     | traces error code: 0
[2025-06-03 23:01:16] 2025-06-03 20:46:36,537 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:01:16] 2025-06-03 20:46:36,824 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:01:16] 2025-06-03 20:46:36,892 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:01:16] 2025-06-03 20:46:36,919 [wrapper] pilotpid: 13195
[2025-06-03 23:01:16] 2025-06-03 20:46:36,952 [wrapper] Pilot exit status: 0
[2025-06-03 23:01:16] 2025-06-03 20:46:37,323 [wrapper] pandaids: 6677455863
[2025-06-03 23:01:16] 2025-06-03 20:46:38,027 [wrapper] cleanup supervisor_pilot  1172 13196
[2025-06-03 23:01:16] 2025-06-03 20:46:38,141 [wrapper] Test setup, not cleaning
[2025-06-03 23:01:16] 2025-06-03 20:46:38,228 [wrapper] apfmon messages muted
[2025-06-03 23:01:16] 2025-06-03 20:46:38,334 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:01:16] 2025-06-03 20:46:38,405 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:01:16]  *** Error codes and diagnostics ***
[2025-06-03 23:01:16]     "exeErrorCode": 0,
[2025-06-03 23:01:16]     "exeErrorDiag": "",
[2025-06-03 23:01:16]     "pilotErrorCode": 0,
[2025-06-03 23:01:16]     "pilotErrorDiag": "",
[2025-06-03 23:01:16]  *** Listing of results directory ***
[2025-06-03 23:01:16] total 395188
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc    495897 Jun  3 05:41 pilot3.tar.gz
[2025-06-03 23:01:16] -rwx------. 1 boinc boinc     37140 Jun  3 05:58 runpilot2-wrapper.sh
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc      5111 Jun  3 05:58 queuedata.json
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc       100 Jun  3 18:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:01:16] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 18:54 run_atlas
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc       105 Jun  3 18:54 job.xml
[2025-06-03 23:01:16] -rw-r--r--. 2 boinc boinc 216151520 Jun  3 18:54 EVNT.45006593._000751.pool.root.1
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc      6391 Jun  3 18:54 init_data.xml
[2025-06-03 23:01:16] -rw-r--r--. 2 boinc boinc     15093 Jun  3 18:54 start_atlas.sh
[2025-06-03 23:01:16] drwxrwx--x. 2 boinc boinc        68 Jun  3 18:54 shared
[2025-06-03 23:01:16] -rw-r--r--. 2 boinc boinc    508877 Jun  3 18:54 input.tar.gz
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc         0 Jun  3 18:54 boinc_lockfile
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc      2523 Jun  3 18:55 pandaJob.out
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc    983734 Jun  3 18:58 agis_schedconf.cvmfs.json
[2025-06-03 23:01:16] drwx------. 4 boinc boinc      4096 Jun  3 18:58 pilot3
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc 181605347 Jun  3 22:43 HITS.45006595._018757.pool.root.1
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc       531 Jun  3 22:43 boinc_task_state.xml
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc      1016 Jun  3 22:44 memory_monitor_summary.json
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc   1603667 Jun  3 22:44 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc    370517 Jun  3 22:44 log.45006595._018757.job.log.tgz.1
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc        95 Jun  3 22:45 pilot_heartbeat.json
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc      7687 Jun  3 22:46 heartbeat.json
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc      4797 Jun  3 22:46 pilotlog.txt
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc   1172501 Jun  3 22:46 log.45006595._018757.job.log.1
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc       357 Jun  3 22:46 output.list
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc       620 Jun  3 22:46 runtime_log
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc   1566720 Jun  3 22:46 result.tar.gz
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc      8659 Jun  3 22:46 runtime_log.err
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc       657 Jun  3 22:46 jLkLDm5xXg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmhIXKDmY8oxZm.diag
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc      8192 Jun  3 23:01 boinc_mmap_file
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc        28 Jun  3 23:01 wrapper_checkpoint.txt
[2025-06-03 23:01:16] -rw-r--r--. 1 boinc boinc     20513 Jun  3 23:01 stderr.txt
[2025-06-03 23:01:16] HITS file was successfully produced:
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc 181605347 Jun  3 22:43 shared/HITS.pool.root.1
[2025-06-03 23:01:16]  *** Contents of shared directory: ***
[2025-06-03 23:01:16] total 390488
[2025-06-03 23:01:16] -rw-r--r--. 2 boinc boinc 216151520 Jun  3 18:54 ATLAS.root_0
[2025-06-03 23:01:16] -rw-r--r--. 2 boinc boinc     15093 Jun  3 18:54 start_atlas.sh
[2025-06-03 23:01:16] -rw-r--r--. 2 boinc boinc    508877 Jun  3 18:54 input.tar.gz
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc 181605347 Jun  3 22:43 HITS.pool.root.1
[2025-06-03 23:01:16] -rw-------. 1 boinc boinc   1566720 Jun  3 22:46 result.tar.gz
23:01:18 (6992): run_atlas exited; CPU time 48852.051494
23:01:18 (6992): called boinc_finish(0)

</stderr_txt>
]]>

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