Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:58:55 (20820): wrapper (7.7.26015): starting
15:58:55 (20820): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 15:58:55] Arguments: --nthreads 8
[2025-06-03 15:58:55] Threads: 8
[2025-06-03 15:58:55] Checking for CVMFS
[2025-06-03 15:58:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 15:58:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 15:58:56] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 15:58:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 15:58:56] 2.11.2.0 6477 31874 94456 146743 0 237 23445489 25165824 3729 130560 0 16224037 99.835 17930143 1866 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 15:58:56] CVMFS is ok
[2025-06-03 15:58:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 15:58:56] Checking for apptainer binary...
[2025-06-03 15:58:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 15:58:56] Running /usr/bin/apptainer --version
[2025-06-03 15:58:57] apptainer version 1.3.2-1.el7
[2025-06-03 15:58:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 15:58:59] cg-vwn261.simple-grid.lan
[2025-06-03 15:58:59] apptainer works
[2025-06-03 15:58:59] Set ATHENA_PROC_NUMBER=8
[2025-06-03 15:58:59] Set ATHENA_CORE_NUMBER=8
[2025-06-03 15:58:59] Starting ATLAS job with PandaID=6677470137
[2025-06-03 15:58:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 21:09:07]  *** The last 200 lines of the pilot log: ***
[2025-06-03 21:09:07] 2025-06-03 17:53:52,590 | INFO     | monitor loop #1021: job 0:6677470137 is in state 'finished'
[2025-06-03 21:09:07] 2025-06-03 17:53:52,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 21:09:07] 2025-06-03 17:53:55,101 | INFO     | monitor loop #1022: job 0:6677470137 is in state 'finished'
[2025-06-03 21:09:07] 2025-06-03 17:53:55,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 21:09:07] 2025-06-03 17:53:57,606 | INFO     | monitor loop #1023: job 0:6677470137 is in state 'finished'
[2025-06-03 21:09:07] 2025-06-03 17:53:57,607 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 21:09:07] 2025-06-03 17:53:59,602 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 21:09:07] 2025-06-03 17:53:59,602 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6677470137/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:09:07] 2025-06-03 17:53:59,603 | INFO     | extracted standard info from prmon json
[2025-06-03 21:09:07] 2025-06-03 17:53:59,603 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 21:09:07] 2025-06-03 17:53:59,603 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 21:09:07] 2025-06-03 17:53:59,604 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 21:09:07] 2025-06-03 17:53:59,604 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 21:09:07] 2025-06-03 17:53:59,608 | INFO     | fitting pss+swap vs Time
[2025-06-03 21:09:07] 2025-06-03 17:53:59,609 | INFO     | sum of square deviations: 3438620752.0
[2025-06-03 21:09:07] 2025-06-03 17:53:59,611 | INFO     | sum of deviations: -18177338088.999973
[2025-06-03 21:09:07] 2025-06-03 17:53:59,611 | INFO     | mean x: 1748966347.0
[2025-06-03 21:09:07] 2025-06-03 17:53:59,611 | INFO     | mean y: 2509308.852017937
[2025-06-03 21:09:07] 2025-06-03 17:53:59,611 | INFO     | -- intersect: 9247946618.916342
[2025-06-03 21:09:07] 2025-06-03 17:53:59,611 | INFO     | intersect: 9247946618.916342
[2025-06-03 21:09:07] 2025-06-03 17:53:59,612 | INFO     | chi2: 4.863362039776368
[2025-06-03 21:09:07] 2025-06-03 17:53:59,612 | INFO     | sum of square deviations: 3212467674.5
[2025-06-03 21:09:07] 2025-06-03 17:53:59,614 | INFO     | sum of deviations: -2193351898.499996
[2025-06-03 21:09:07] 2025-06-03 17:53:59,614 | INFO     | mean x: 1748966194.5
[2025-06-03 21:09:07] 2025-06-03 17:53:59,614 | INFO     | mean y: 2519908.600917431
[2025-06-03 21:09:07] 2025-06-03 17:53:59,614 | INFO     | -- intersect: 1196648133.942812
[2025-06-03 21:09:07] 2025-06-03 17:53:59,614 | INFO     | intersect: 1196648133.942812
[2025-06-03 21:09:07] 2025-06-03 17:53:59,615 | INFO     | chi2: 4.129283362585834
[2025-06-03 21:09:07] 2025-06-03 17:53:59,615 | INFO     | current chi2=4.129283362585834 (change=15.0940577976031 %)
[2025-06-03 21:09:07] 2025-06-03 17:53:59,615 | INFO     | right removable region: 217
[2025-06-03 21:09:07] 2025-06-03 17:53:59,615 | INFO     | sum of square deviations: 3212467674.5
[2025-06-03 21:09:07] 2025-06-03 17:53:59,617 | INFO     | sum of deviations: -87010900565.99997
[2025-06-03 21:09:07] 2025-06-03 17:53:59,617 | INFO     | mean x: 1748966499.5
[2025-06-03 21:09:07] 2025-06-03 17:53:59,617 | INFO     | mean y: 2555593.4220183487
[2025-06-03 21:09:07] 2025-06-03 17:53:59,617 | INFO     | -- intersect: 47373973954.836426
[2025-06-03 21:09:07] 2025-06-03 17:53:59,617 | INFO     | intersect: 47373973954.836426
[2025-06-03 21:09:07] 2025-06-03 17:53:59,618 | INFO     | chi2: 1.1304249536893183
[2025-06-03 21:09:07] 2025-06-03 17:53:59,618 | INFO     | current chi2=1.1304249536893183 (change=76.75630675973079 %)
[2025-06-03 21:09:07] 2025-06-03 17:53:59,618 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 21:09:07] 2025-06-03 17:53:59,620 | INFO     | sum of deviations: -92704343740.00002
[2025-06-03 21:09:07] 2025-06-03 17:53:59,620 | INFO     | mean x: 1748966652.0
[2025-06-03 21:09:07] 2025-06-03 17:53:59,620 | INFO     | mean y: 2559530.164319249
[2025-06-03 21:09:07] 2025-06-03 17:53:59,620 | INFO     | -- intersect: 54112113113.67628
[2025-06-03 21:09:07] 2025-06-03 17:53:59,620 | INFO     | intersect: 54112113113.67628
[2025-06-03 21:09:07] 2025-06-03 17:53:59,621 | INFO     | chi2: 1.0010163115940238
[2025-06-03 21:09:07] 2025-06-03 17:53:59,621 | INFO     | current chi2=1.0010163115940238 (change=11.447787106339891 %)
[2025-06-03 21:09:07] 2025-06-03 17:53:59,621 | INFO     | left removable region: 20
[2025-06-03 21:09:07] 2025-06-03 17:53:59,621 | INFO     | sum of square deviations: 2370641658.0
[2025-06-03 21:09:07] 2025-06-03 17:53:59,623 | INFO     | sum of deviations: -64803950118.00001
[2025-06-03 21:09:07] 2025-06-03 17:53:59,623 | INFO     | mean x: 1748966774.0
[2025-06-03 21:09:07] 2025-06-03 17:53:59,623 | INFO     | mean y: 2563784.9187817257
[2025-06-03 21:09:07] 2025-06-03 17:53:59,623 | INFO     | -- intersect: 47812385736.64937
[2025-06-03 21:09:07] 2025-06-03 17:53:59,623 | INFO     | intersect: 47812385736.64937
[2025-06-03 21:09:07] 2025-06-03 17:53:59,624 | INFO     | chi2: 0.2047235378711114
[2025-06-03 21:09:07] 2025-06-03 17:53:59,624 | INFO     | -- intersect: 47812385736.64937
[2025-06-03 21:09:07] 2025-06-03 17:53:59,624 | INFO     | current memory leak: -27.34 B/s (using 197 data points, chi2=0.20)
[2025-06-03 21:09:07] 2025-06-03 17:53:59,625 | INFO     | ..............................
[2025-06-03 21:09:07] 2025-06-03 17:53:59,625 | INFO     | . Timing measurements:
[2025-06-03 21:09:07] 2025-06-03 17:53:59,625 | INFO     | . get job = 0 s
[2025-06-03 21:09:07] 2025-06-03 17:53:59,625 | INFO     | . initial setup = 2 s
[2025-06-03 21:09:07] 2025-06-03 17:53:59,625 | INFO     | . payload setup = 116 s
[2025-06-03 21:09:07] 2025-06-03 17:53:59,625 | INFO     | . stage-in = 0 s
[2025-06-03 21:09:07] 2025-06-03 17:53:59,625 | INFO     | . payload execution = 13712 s
[2025-06-03 21:09:07] 2025-06-03 17:53:59,625 | INFO     | . stage-out = 3 s
[2025-06-03 21:09:07] 2025-06-03 17:53:59,625 | INFO     | . log creation = 1 s
[2025-06-03 21:09:07] 2025-06-03 17:53:59,626 | INFO     | ..............................
[2025-06-03 21:09:07] 2025-06-03 17:53:59,745 | INFO     | 
[2025-06-03 21:09:07] 2025-06-03 17:53:59,745 | INFO     | job summary report
[2025-06-03 21:09:07] 2025-06-03 17:53:59,745 | INFO     | --------------------------------------------------
[2025-06-03 21:09:07] 2025-06-03 17:53:59,745 | INFO     | PanDA job id: 6677470137
[2025-06-03 21:09:07] 2025-06-03 17:53:59,745 | INFO     | task id: 45006595
[2025-06-03 21:09:07] 2025-06-03 17:53:59,745 | INFO     | errors: (none)
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | pilot state: finished 
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | transexitcode: 0
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | exeerrorcode: 0
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | exeerrordiag: 
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | exitcode: 0
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | exitmsg: OK
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | cpuconsumptiontime: 50454 s
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | nevents: 400
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | neventsw: 0
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | pid: 5585
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | pgrp: 5585
[2025-06-03 21:09:07] 2025-06-03 17:53:59,746 | INFO     | corecount: 8
[2025-06-03 21:09:07] 2025-06-03 17:53:59,747 | INFO     | event service: False
[2025-06-03 21:09:07] 2025-06-03 17:53:59,747 | INFO     | sizes: {0: 2405009, 1: 2405208, 12: 2405208, 23: 2405236, 34: 2405264, 44: 2405292, 55: 2405448, 61: 2405682, 66: 2405710, 13833: 2435490, 13838: 2444767, 13931: 2
[2025-06-03 21:09:07] 2025-06-03 17:53:59,747 | INFO     | --------------------------------------------------
[2025-06-03 21:09:07] 2025-06-03 17:53:59,747 | INFO     | 
[2025-06-03 21:09:07] 2025-06-03 17:53:59,747 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-03 21:09:07] 2025-06-03 17:53:59,815 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,816 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,816 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,816 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,816 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,816 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,816 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,816 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,817 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,817 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,817 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,817 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,817 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 21:09:07] 2025-06-03 17:53:59,818 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,818 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 21:09:07] 2025-06-03 17:53:59,818 | INFO     | job 6677470137 has completed (purged errors)
[2025-06-03 21:09:07] 2025-06-03 17:53:59,818 | INFO     | overall cleanup function is called
[2025-06-03 21:09:07] 2025-06-03 17:54:00,826 | INFO     | --- collectZombieJob: --- 10, [5585]
[2025-06-03 21:09:07] 2025-06-03 17:54:00,827 | INFO     | zombie collector waiting for pid 5585
[2025-06-03 21:09:07] 2025-06-03 17:54:00,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 21:09:07] 2025-06-03 17:54:00,827 | INFO     | collected zombie processes
[2025-06-03 21:09:07] 2025-06-03 17:54:00,827 | INFO     | will attempt to kill all subprocesses of pid=5585
[2025-06-03 21:09:07] 2025-06-03 17:54:00,954 | INFO     | process IDs to be killed: [5585] (in reverse order)
[2025-06-03 21:09:07] 2025-06-03 17:54:01,828 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 21:09:07] 2025-06-03 17:54:01,828 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 21:09:07] 2025-06-03 17:54:01,832 | INFO     | did not find any defunct processes belonging to 5585
[2025-06-03 21:09:07] 2025-06-03 17:54:01,834 | INFO     | did not find any defunct processes belonging to 5585
[2025-06-03 21:09:07] 2025-06-03 17:54:01,835 | INFO     | ready for new job
[2025-06-03 21:09:07] 2025-06-03 17:54:01,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 21:09:07] 2025-06-03 17:54:01,837 | INFO     | **************************************
[2025-06-03 21:09:07] 2025-06-03 17:54:01,837 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 21:09:07] 2025-06-03 17:54:01,837 | INFO     | **************************************
[2025-06-03 21:09:07] 2025-06-03 17:54:01,837 | INFO     | 
[2025-06-03 21:09:07] 2025-06-03 17:54:01,838 | INFO     | pilot is running in a VM
[2025-06-03 21:09:07] 2025-06-03 17:54:01,838 | INFO     | architecture information:
[2025-06-03 21:09:07] 2025-06-03 17:54:01,842 | INFO     | executing command: cat /etc/os-release
[2025-06-03 21:09:07] 2025-06-03 17:54:02,030 | INFO     | cat /etc/os-release:
[2025-06-03 21:09:07] NAME="CentOS Linux"
[2025-06-03 21:09:07] VERSION="7 (Core)"
[2025-06-03 21:09:07] ID="centos"
[2025-06-03 21:09:07] ID_LIKE="rhel fedora"
[2025-06-03 21:09:07] VERSION_ID="7"
[2025-06-03 21:09:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 21:09:07] ANSI_COLOR="0;31"
[2025-06-03 21:09:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 21:09:07] HOME_URL="https://www.centos.org/"
[2025-06-03 21:09:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 21:09:07] 
[2025-06-03 21:09:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 21:09:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 21:09:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 21:09:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 21:09:07] 
[2025-06-03 21:09:07] 2025-06-03 17:54:02,030 | INFO     | **************************************
[2025-06-03 21:09:07] 2025-06-03 17:54:02,533 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-03 21:09:07] 2025-06-03 17:54:02,784 | INFO     | sufficient remaining disk space (497037606912 B)
[2025-06-03 21:09:07] 2025-06-03 17:54:02,784 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 21:09:07] 2025-06-03 17:54:02,784 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 21:09:07] 2025-06-03 17:54:02,785 | INFO     | update_server=False
[2025-06-03 21:09:07] 2025-06-03 17:54:02,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 21:09:07] 2025-06-03 17:54:02,785 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 21:09:07] 2025-06-03 17:54:02,786 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 21:09:07] 2025-06-03 17:54:02,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 21:09:07] 2025-06-03 17:54:02,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 21:09:07] 2025-06-03 17:54:02,787 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 21:09:07] 2025-06-03 17:54:03,216 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 21:09:07] 2025-06-03 17:54:03,219 | INFO     | all payload control threads have been joined
[2025-06-03 21:09:07] 2025-06-03 17:54:03,396 | INFO     | all data control threads have been joined
[2025-06-03 21:09:07] 2025-06-03 17:54:03,674 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:09:07] 2025-06-03 17:54:03,675 | INFO     | aborting loop
[2025-06-03 21:09:07] 2025-06-03 17:54:03,790 | INFO     | [job] retrieve thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:04,097 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:04,113 | INFO     | [payload] failed_post thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:04,181 | INFO     | [payload] validate_post thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:04,225 | INFO     | [payload] control thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:04,272 | INFO     | all job control threads have been joined
[2025-06-03 21:09:07] 2025-06-03 17:54:04,357 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:04,402 | INFO     | [data] control thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:04,423 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:04,558 | INFO     | [data] copytool_in thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:04,680 | INFO     | [job] job monitor thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:04,770 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:09:07] 2025-06-03 17:54:04,794 | INFO     | [data] copytool_out thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:05,066 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:05,173 | INFO     | [job] validate thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:05,278 | INFO     | [job] control thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:05,776 | INFO     | [job] queue monitor thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:07,226 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 21:09:07] 2025-06-03 17:54:08,709 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139932969617216)>', '<ExcThread(monitor, started 139932307810048)>']
[2025-06-03 21:09:07] 2025-06-03 17:54:08,821 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 21:09:07] 2025-06-03 17:54:08,822 | INFO     | [monitor] control thread has ended
[2025-06-03 21:09:07] 2025-06-03 17:54:13,735 | INFO     | all workflow threads have been joined
[2025-06-03 21:09:07] 2025-06-03 17:54:13,735 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 21:09:07] 2025-06-03 17:54:13,736 | INFO     | traces error code: 0
[2025-06-03 21:09:07] 2025-06-03 17:54:13,736 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 21:09:07] 2025-06-03 17:54:14,085 [wrapper] ==== pilot stdout END ====
[2025-06-03 21:09:07] 2025-06-03 17:54:14,197 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 21:09:07] 2025-06-03 17:54:14,329 [wrapper] pilotpid: 29351
[2025-06-03 21:09:07] 2025-06-03 17:54:14,420 [wrapper] Pilot exit status: 0
[2025-06-03 21:09:07] 2025-06-03 17:54:14,646 [wrapper] pandaids: 6677470137
[2025-06-03 21:09:07] 2025-06-03 17:54:15,377 [wrapper] cleanup supervisor_pilot  2151 29352
[2025-06-03 21:09:07] 2025-06-03 17:54:15,437 [wrapper] Test setup, not cleaning
[2025-06-03 21:09:07] 2025-06-03 17:54:15,461 [wrapper] apfmon messages muted
[2025-06-03 21:09:07] 2025-06-03 17:54:15,560 [wrapper] ==== wrapper stdout END ====
[2025-06-03 21:09:07] 2025-06-03 17:54:15,666 [wrapper] ==== wrapper stderr END ====
[2025-06-03 21:09:07]  *** Error codes and diagnostics ***
[2025-06-03 21:09:07]     "exeErrorCode": 0,
[2025-06-03 21:09:07]     "exeErrorDiag": "",
[2025-06-03 21:09:07]     "pilotErrorCode": 0,
[2025-06-03 21:09:07]     "pilotErrorDiag": "",
[2025-06-03 21:09:07]  *** Listing of results directory ***
[2025-06-03 21:09:07] total 392448
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc    495897 Jun  3 07:14 pilot3.tar.gz
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc      5111 Jun  3 07:17 queuedata.json
[2025-06-03 21:09:07] -rwx------. 1 boinc boinc     37140 Jun  3 07:18 runpilot2-wrapper.sh
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc       100 Jun  3 15:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 21:09:07] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 15:58 run_atlas
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc       105 Jun  3 15:58 job.xml
[2025-06-03 21:09:07] -rw-r--r--. 2 boinc boinc 213752272 Jun  3 15:58 EVNT.45006593._000819.pool.root.1
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc      6391 Jun  3 15:58 init_data.xml
[2025-06-03 21:09:07] -rw-r--r--. 2 boinc boinc     15093 Jun  3 15:58 start_atlas.sh
[2025-06-03 21:09:07] drwxrwx--x. 2 boinc boinc        68 Jun  3 15:58 shared
[2025-06-03 21:09:07] -rw-r--r--. 2 boinc boinc    508868 Jun  3 15:58 input.tar.gz
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc         0 Jun  3 15:58 boinc_lockfile
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc      2523 Jun  3 15:58 pandaJob.out
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc    982724 Jun  3 15:59 agis_schedconf.cvmfs.json
[2025-06-03 21:09:07] drwx------. 4 boinc boinc      4096 Jun  3 15:59 pilot3
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc 181146477 Jun  3 19:51 HITS.45006595._020456.pool.root.1
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc       531 Jun  3 19:51 boinc_task_state.xml
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc      1018 Jun  3 19:52 memory_monitor_summary.json
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc   1603667 Jun  3 19:52 agis_ddmendpoints.agis.ALL.json
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc    371092 Jun  3 19:52 log.45006595._020456.job.log.tgz.1
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc      7694 Jun  3 19:53 heartbeat.json
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc        95 Jun  3 19:54 pilot_heartbeat.json
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc      4539 Jun  3 19:54 pilotlog.txt
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc   1202618 Jun  3 19:54 log.45006595._020456.job.log.1
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc       357 Jun  3 19:54 output.list
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc       620 Jun  3 19:54 runtime_log
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc   1597440 Jun  3 19:54 result.tar.gz
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc       656 Jun  3 19:54 V8hKDmbDZg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmu8hKDmJCFd9n.diag
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc      8659 Jun  3 19:54 runtime_log.err
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc      8192 Jun  3 21:09 boinc_mmap_file
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc        28 Jun  3 21:09 wrapper_checkpoint.txt
[2025-06-03 21:09:07] -rw-r--r--. 1 boinc boinc     20792 Jun  3 21:09 stderr.txt
[2025-06-03 21:09:07] HITS file was successfully produced:
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc 181146477 Jun  3 19:51 shared/HITS.pool.root.1
[2025-06-03 21:09:07]  *** Contents of shared directory: ***
[2025-06-03 21:09:07] total 387724
[2025-06-03 21:09:07] -rw-r--r--. 2 boinc boinc 213752272 Jun  3 15:58 ATLAS.root_0
[2025-06-03 21:09:07] -rw-r--r--. 2 boinc boinc     15093 Jun  3 15:58 start_atlas.sh
[2025-06-03 21:09:07] -rw-r--r--. 2 boinc boinc    508868 Jun  3 15:58 input.tar.gz
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc 181146477 Jun  3 19:51 HITS.pool.root.1
[2025-06-03 21:09:07] -rw-------. 1 boinc boinc   1597440 Jun  3 19:54 result.tar.gz
21:09:09 (20820): run_atlas exited; CPU time 50646.950432
21:09:09 (20820): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN