Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:50:50 (1509766): wrapper (7.7.26015): starting
03:50:50 (1509766): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 03:50:50] Arguments: --nthreads 8
[2025-06-03 03:50:50] Threads: 8
[2025-06-03 03:50:50] Checking for CVMFS
[2025-06-03 03:50:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 03:50:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 03:50:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 03:50:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 03:50:51] 2.12.6.0 3036893 21583 426580 146734 0 290 32842086 32935937 11284 16776704 0 106990390 99.639 95999936 24439 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 03:50:51] CVMFS is ok
[2025-06-03 03:50:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 03:50:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 03:50:51] Further information can be found at the LHC@home message board.
[2025-06-03 03:50:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 03:50:51] Checking for apptainer binary...
[2025-06-03 03:50:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 03:50:51] Running /usr/bin/apptainer --version
[2025-06-03 03:50:51] apptainer version 1.4.1-1.el9
[2025-06-03 03:50:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 03:50:51] c6-12-29-4.aglt2.org
[2025-06-03 03:50:51] apptainer works
[2025-06-03 03:50:51] Set ATHENA_PROC_NUMBER=8
[2025-06-03 03:50:51] Set ATHENA_CORE_NUMBER=8
[2025-06-03 03:50:51] Starting ATLAS job with PandaID=6677469517
[2025-06-03 03:50:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 05:21:04]  *** The last 200 lines of the pilot log: ***
[2025-06-03 05:21:04]  guid=4c77bf1a-97e9-49f7-87e7-1f50a8b45ef4
[2025-06-03 05:21:04]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 05:21:04]  is_altstaged=None
[2025-06-03 05:21:04]  is_tar=False
[2025-06-03 05:21:04]  lfn=log.45006595._020218.job.log.tgz.1
[2025-06-03 05:21:04]  mtime=0
[2025-06-03 05:21:04]  protocol_id=None
[2025-06-03 05:21:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 05:21:04]  replicas=None
[2025-06-03 05:21:04]  scope=mc23_13p6TeV
[2025-06-03 05:21:04]  status=None
[2025-06-03 05:21:04]  status_code=0
[2025-06-03 05:21:04]  storage_token=
[2025-06-03 05:21:04]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6677469517/log.45006595._020218.job.log.tgz.1
[2025-06-03 05:21:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/7b/log.45006595._020218.job.log.tgz.1
[2025-06-03 05:21:04]  workdir=None
[2025-06-03 05:21:04] ]
[2025-06-03 05:21:04] 2025-06-03 09:20:39,547 | INFO     | transferring file log.45006595._020218.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6677469517/log.45006595._020218.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 05:21:04] 2025-06-03 09:20:39,547 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6677469517/log.45006595._020218.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._020218.job
[2025-06-03 05:21:04] 2025-06-03 09:20:39,560 | INFO     | adding to output.list: log.45006595._020218.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/7b/log.45006595._020218.job.log.tg
[2025-06-03 05:21:04] 2025-06-03 09:20:39,561 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 05:21:04] 2025-06-03 09:20:39,561 | INFO     | summary of transferred files:
[2025-06-03 05:21:04] 2025-06-03 09:20:39,561 | INFO     |  -- lfn=log.45006595._020218.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 05:21:04] 2025-06-03 09:20:39,561 | INFO     | stage-out finished correctly
[2025-06-03 05:21:04] 2025-06-03 09:20:40,256 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 05:21:04] 2025-06-03 09:20:41,342 | INFO     | monitor loop #382: job 0:6677469517 is in state 'finished'
[2025-06-03 05:21:04] 2025-06-03 09:20:41,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:21:04] 2025-06-03 09:20:43,095 | INFO     | job 6677469517 has state=finished
[2025-06-03 05:21:04] 2025-06-03 09:20:43,096 | INFO     | preparing for final server update for job 6677469517 in state='finished'
[2025-06-03 05:21:04] 2025-06-03 09:20:43,096 | INFO     | this job has now completed (state=finished)
[2025-06-03 05:21:04] 2025-06-03 09:20:43,096 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 05:21:04] 2025-06-03 09:20:43,096 | INFO     | log transfer has been attempted: DONE
[2025-06-03 05:21:04] 2025-06-03 09:20:43,096 | INFO     | job 6677469517 has finished - writing final server update
[2025-06-03 05:21:04] 2025-06-03 09:20:43,097 | INFO     | total number of processed events: 400 (read)
[2025-06-03 05:21:04] 2025-06-03 09:20:43,114 | INFO     | executing command: lscpu
[2025-06-03 05:21:04] 2025-06-03 09:20:43,169 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 05:21:04] 2025-06-03 09:20:43,845 | INFO     | monitor loop #383: job 0:6677469517 is in state 'finished'
[2025-06-03 05:21:04] 2025-06-03 09:20:43,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:21:04] 2025-06-03 09:20:45,748 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 05:21:04] 2025-06-03 09:20:45,748 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6677469517/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 05:21:04] 2025-06-03 09:20:45,749 | INFO     | extracted standard info from prmon json
[2025-06-03 05:21:04] 2025-06-03 09:20:45,749 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 05:21:04] 2025-06-03 09:20:45,749 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 05:21:04] 2025-06-03 09:20:45,749 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 05:21:04] 2025-06-03 09:20:45,749 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 05:21:04] 2025-06-03 09:20:45,750 | INFO     | fitting pss+swap vs Time
[2025-06-03 05:21:04] 2025-06-03 09:20:45,751 | INFO     | sum of square deviations: 164765880.0
[2025-06-03 05:21:04] 2025-06-03 09:20:45,751 | INFO     | sum of deviations: 13749247378.0
[2025-06-03 05:21:04] 2025-06-03 09:20:45,751 | INFO     | mean x: 1748939824.0
[2025-06-03 05:21:04] 2025-06-03 09:20:45,751 | INFO     | mean y: 2086476.0
[2025-06-03 05:21:04] 2025-06-03 09:20:45,751 | INFO     | -- intersect: -145942002733.56073
[2025-06-03 05:21:04] 2025-06-03 09:20:45,751 | INFO     | intersect: -145942002733.56073
[2025-06-03 05:21:04] 2025-06-03 09:20:45,751 | INFO     | chi2: 1.2208771936852758
[2025-06-03 05:21:04] 2025-06-03 09:20:45,751 | INFO     | -- intersect: -145942002733.56073
[2025-06-03 05:21:04] 2025-06-03 09:20:45,751 | INFO     | current memory leak: 83.45 B/s (using 81 data points, chi2=1.22)
[2025-06-03 05:21:04] 2025-06-03 09:20:45,751 | INFO     | ..............................
[2025-06-03 05:21:04] 2025-06-03 09:20:45,752 | INFO     | . Timing measurements:
[2025-06-03 05:21:04] 2025-06-03 09:20:45,752 | INFO     | . get job = 0 s
[2025-06-03 05:21:04] 2025-06-03 09:20:45,752 | INFO     | . initial setup = 2 s
[2025-06-03 05:21:04] 2025-06-03 09:20:45,752 | INFO     | . payload setup = 4 s
[2025-06-03 05:21:04] 2025-06-03 09:20:45,752 | INFO     | . stage-in = 0 s
[2025-06-03 05:21:04] 2025-06-03 09:20:45,752 | INFO     | . payload execution = 5359 s
[2025-06-03 05:21:04] 2025-06-03 09:20:45,752 | INFO     | . stage-out = 0 s
[2025-06-03 05:21:04] 2025-06-03 09:20:45,752 | INFO     | . log creation = 0 s
[2025-06-03 05:21:04] 2025-06-03 09:20:45,752 | INFO     | ..............................
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | 
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | job summary report
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | --------------------------------------------------
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | PanDA job id: 6677469517
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | task id: 45006595
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | errors: (none)
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | pilot state: finished 
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | transexitcode: 0
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | exeerrorcode: 0
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | exeerrordiag: 
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | exitcode: 0
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | exitmsg: OK
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | cpuconsumptiontime: 35089 s
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | nevents: 400
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | neventsw: 0
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | pid: 1519939
[2025-06-03 05:21:04] 2025-06-03 09:20:45,971 | INFO     | pgrp: 1519939
[2025-06-03 05:21:04] 2025-06-03 09:20:45,972 | INFO     | corecount: 8
[2025-06-03 05:21:04] 2025-06-03 09:20:45,972 | INFO     | event service: False
[2025-06-03 05:21:04] 2025-06-03 09:20:45,972 | INFO     | sizes: {0: 2405181, 3: 2405387, 11: 2405415, 5367: 2431857, 5368: 2440854, 5374: 2440968}
[2025-06-03 05:21:04] 2025-06-03 09:20:45,972 | INFO     | --------------------------------------------------
[2025-06-03 05:21:04] 2025-06-03 09:20:45,972 | INFO     | 
[2025-06-03 05:21:04] 2025-06-03 09:20:45,972 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-03 05:21:04] 2025-06-03 09:20:45,984 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,984 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,984 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,984 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,984 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,984 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,984 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,984 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,984 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | job 6677469517 has completed (purged errors)
[2025-06-03 05:21:04] 2025-06-03 09:20:45,985 | INFO     | overall cleanup function is called
[2025-06-03 05:21:04] 2025-06-03 09:20:46,992 | INFO     | --- collectZombieJob: --- 10, [1519939]
[2025-06-03 05:21:04] 2025-06-03 09:20:46,992 | INFO     | zombie collector waiting for pid 1519939
[2025-06-03 05:21:04] 2025-06-03 09:20:46,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 05:21:04] 2025-06-03 09:20:46,992 | INFO     | collected zombie processes
[2025-06-03 05:21:04] 2025-06-03 09:20:46,992 | INFO     | will attempt to kill all subprocesses of pid=1519939
[2025-06-03 05:21:04] 2025-06-03 09:20:47,196 | INFO     | process IDs to be killed: [1519939] (in reverse order)
[2025-06-03 05:21:04] 2025-06-03 09:20:47,257 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 05:21:04] 2025-06-03 09:20:47,257 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 05:21:04] 2025-06-03 09:20:47,266 | INFO     | did not find any defunct processes belonging to 1519939
[2025-06-03 05:21:04] 2025-06-03 09:20:47,274 | INFO     | did not find any defunct processes belonging to 1519939
[2025-06-03 05:21:04] 2025-06-03 09:20:47,274 | INFO     | ready for new job
[2025-06-03 05:21:04] 2025-06-03 09:20:47,274 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 05:21:04] 2025-06-03 09:20:47,275 | INFO     | **************************************
[2025-06-03 05:21:04] 2025-06-03 09:20:47,275 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 05:21:04] 2025-06-03 09:20:47,275 | INFO     | **************************************
[2025-06-03 05:21:04] 2025-06-03 09:20:47,275 | INFO     | 
[2025-06-03 05:21:04] 2025-06-03 09:20:47,290 | INFO     | architecture information:
[2025-06-03 05:21:04] 2025-06-03 09:20:47,290 | INFO     | executing command: cat /etc/os-release
[2025-06-03 05:21:04] 2025-06-03 09:20:47,301 | INFO     | cat /etc/os-release:
[2025-06-03 05:21:04] NAME="CentOS Linux"
[2025-06-03 05:21:04] VERSION="7 (Core)"
[2025-06-03 05:21:04] ID="centos"
[2025-06-03 05:21:04] ID_LIKE="rhel fedora"
[2025-06-03 05:21:04] VERSION_ID="7"
[2025-06-03 05:21:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 05:21:04] ANSI_COLOR="0;31"
[2025-06-03 05:21:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 05:21:04] HOME_URL="https://www.centos.org/"
[2025-06-03 05:21:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 05:21:04] 
[2025-06-03 05:21:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 05:21:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 05:21:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 05:21:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 05:21:04] 
[2025-06-03 05:21:04] 2025-06-03 09:20:47,301 | INFO     | **************************************
[2025-06-03 05:21:04] 2025-06-03 09:20:47,804 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-03 05:21:04] 2025-06-03 09:20:47,818 | INFO     | sufficient remaining disk space (90534051840 B)
[2025-06-03 05:21:04] 2025-06-03 09:20:47,819 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 05:21:04] 2025-06-03 09:20:47,819 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 05:21:04] 2025-06-03 09:20:47,819 | INFO     | update_server=False
[2025-06-03 05:21:04] 2025-06-03 09:20:47,819 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 05:21:04] 2025-06-03 09:20:47,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:21:04] 2025-06-03 09:20:47,819 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 05:21:04] 2025-06-03 09:20:47,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 05:21:04] 2025-06-03 09:20:47,820 | INFO     | aborting loop
[2025-06-03 05:21:04] 2025-06-03 09:20:47,820 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 05:21:04] 2025-06-03 09:20:47,821 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 05:21:04] 2025-06-03 09:20:47,821 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 05:21:04] 2025-06-03 09:20:48,705 | INFO     | all data control threads have been joined
[2025-06-03 05:21:04] 2025-06-03 09:20:48,706 | INFO     | all job control threads have been joined
[2025-06-03 05:21:04] 2025-06-03 09:20:48,822 | INFO     | [job] job monitor thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:48,824 | INFO     | [job] retrieve thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:48,902 | INFO     | [job] validate thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:48,959 | INFO     | [payload] failed_post thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:48,978 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:49,000 | INFO     | all payload control threads have been joined
[2025-06-03 05:21:04] 2025-06-03 09:20:49,145 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:49,653 | INFO     | [payload] validate_post thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:49,709 | INFO     | [data] control thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:49,711 | INFO     | [job] control thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:49,735 | INFO     | [data] copytool_in thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:49,826 | INFO     | [data] copytool_out thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:50,006 | INFO     | [payload] control thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:50,113 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:50,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:21:04] 2025-06-03 09:20:50,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 05:21:04] 2025-06-03 09:20:51,820 | INFO     | [job] queue monitor thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:54,846 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:55,984 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-06-03 05:21:04] 2025-06-03 09:20:58,190 | INFO     | job.realtimelogging is not enabled
[2025-06-03 05:21:04] 2025-06-03 09:20:59,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 05:21:04] 2025-06-03 09:20:59,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139949113128768)>', '<ExcThread(monitor, started 139948346828544)>']
[2025-06-03 05:21:04] 2025-06-03 09:20:59,877 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 05:21:04] 2025-06-03 09:20:59,877 | INFO     | [monitor] control thread has ended
[2025-06-03 05:21:04] 2025-06-03 09:21:04,666 | INFO     | all workflow threads have been joined
[2025-06-03 05:21:04] 2025-06-03 09:21:04,666 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 05:21:04] 2025-06-03 09:21:04,666 | INFO     | traces error code: 0
[2025-06-03 05:21:04] 2025-06-03 09:21:04,666 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 05:21:04] 2025-06-03 09:21:04,831 [wrapper] ==== pilot stdout END ====
[2025-06-03 05:21:04] 2025-06-03 09:21:04,834 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 05:21:04] 2025-06-03 09:21:04,836 [wrapper] pilotpid: 1513414
[2025-06-03 05:21:04] 2025-06-03 09:21:04,837 [wrapper] Pilot exit status: 0
[2025-06-03 05:21:04] 2025-06-03 09:21:04,844 [wrapper] pandaids: 6677469517
[2025-06-03 05:21:04] 2025-06-03 09:21:04,903 [wrapper] cleanup supervisor_pilot 1879083 1513415
[2025-06-03 05:21:04] 2025-06-03 09:21:04,905 [wrapper] Test setup, not cleaning
[2025-06-03 05:21:04] 2025-06-03 09:21:04,906 [wrapper] apfmon messages muted
[2025-06-03 05:21:04] 2025-06-03 09:21:04,908 [wrapper] ==== wrapper stdout END ====
[2025-06-03 05:21:04] 2025-06-03 09:21:04,909 [wrapper] ==== wrapper stderr END ====
[2025-06-03 05:21:04]  *** Error codes and diagnostics ***
[2025-06-03 05:21:04]     "exeErrorCode": 0,
[2025-06-03 05:21:04]     "exeErrorDiag": "",
[2025-06-03 05:21:04]     "pilotErrorCode": 0,
[2025-06-03 05:21:04]     "pilotErrorDiag": "",
[2025-06-03 05:21:04]  *** Listing of results directory ***
[2025-06-03 05:21:04] total 391568
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 00:53 pilot3.tar.gz
[2025-06-03 05:21:04] -rwx------. 1 boincer umatlas     37140 Jun  3 01:04 runpilot2-wrapper.sh
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 01:04 queuedata.json
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas       100 Jun  3 03:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 05:21:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 03:50 run_atlas
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas       105 Jun  3 03:50 job.xml
[2025-06-03 05:21:04] -rw-r--r--. 2 boincer umatlas 215958412 Jun  3 03:50 EVNT.45006593._000809.pool.root.1
[2025-06-03 05:21:04] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 03:50 start_atlas.sh
[2025-06-03 05:21:04] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 03:50 shared
[2025-06-03 05:21:04] -rw-r--r--. 2 boincer umatlas    508875 Jun  3 03:50 input.tar.gz
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas         0 Jun  3 03:50 boinc_lockfile
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas      2523 Jun  3 03:50 pandaJob.out
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas    985499 Jun  3 03:50 agis_schedconf.cvmfs.json
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas   1603667 Jun  3 03:50 agis_ddmendpoints.agis.ALL.json
[2025-06-03 05:21:04] drwx------. 4 boincer umatlas      4096 Jun  3 03:50 pilot3
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas      6860 Jun  3 05:10 init_data.xml
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas 179510424 Jun  3 05:20 HITS.45006595._020218.pool.root.1
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas       529 Jun  3 05:20 boinc_task_state.xml
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas      1047 Jun  3 05:20 memory_monitor_summary.json
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas    313019 Jun  3 05:20 log.45006595._020218.job.log.tgz.1
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas        95 Jun  3 05:20 pilot_heartbeat.json
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas      7717 Jun  3 05:20 heartbeat.json
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas        27 Jun  3 05:21 wrapper_checkpoint.txt
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas      4548 Jun  3 05:21 pilotlog.txt
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 05:21 boinc_mmap_file
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas    514370 Jun  3 05:21 log.45006595._020218.job.log.1
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas       357 Jun  3 05:21 output.list
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas       620 Jun  3 05:21 runtime_log
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas    849920 Jun  3 05:21 result.tar.gz
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas       654 Jun  3 05:21 zYFNDmO0Yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmF5hKDm8qaDRo.diag
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas      8669 Jun  3 05:21 runtime_log.err
[2025-06-03 05:21:04] -rw-r--r--. 1 boincer umatlas     21252 Jun  3 05:21 stderr.txt
[2025-06-03 05:21:04] HITS file was successfully produced:
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas 179510424 Jun  3 05:20 shared/HITS.pool.root.1
[2025-06-03 05:21:04]  *** Contents of shared directory: ***
[2025-06-03 05:21:04] total 387560
[2025-06-03 05:21:04] -rw-r--r--. 2 boincer umatlas 215958412 Jun  3 03:50 ATLAS.root_0
[2025-06-03 05:21:04] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 03:50 start_atlas.sh
[2025-06-03 05:21:04] -rw-r--r--. 2 boincer umatlas    508875 Jun  3 03:50 input.tar.gz
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas 179510424 Jun  3 05:20 HITS.pool.root.1
[2025-06-03 05:21:04] -rw-------. 1 boincer umatlas    849920 Jun  3 05:21 result.tar.gz
05:21:06 (1509766): run_atlas exited; CPU time 35318.913425
05:21:06 (1509766): called boinc_finish(0)

</stderr_txt>
]]>

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