Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:47:02 (1440485): wrapper (7.7.26015): starting
03:47:02 (1440485): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 03:47:02] Arguments: --nthreads 8
[2025-06-03 03:47:02] Threads: 8
[2025-06-03 03:47:02] Checking for CVMFS
[2025-06-03 03:47:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 03:47:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 03:47:02] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 03:47:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 03:47:02] 2.12.6.0 3036893 21579 426744 146734 0 290 32837729 32935937 9282 16776704 0 106801545 99.639 95999936 24439 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 03:47:02] CVMFS is ok
[2025-06-03 03:47:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 03:47:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 03:47:02] Further information can be found at the LHC@home message board.
[2025-06-03 03:47:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 03:47:02] Checking for apptainer binary...
[2025-06-03 03:47:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 03:47:02] Running /usr/bin/apptainer --version
[2025-06-03 03:47:02] apptainer version 1.4.1-1.el9
[2025-06-03 03:47:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 03:47:02] c6-12-29-4.aglt2.org
[2025-06-03 03:47:02] apptainer works
[2025-06-03 03:47:02] Set ATHENA_PROC_NUMBER=8
[2025-06-03 03:47:02] Set ATHENA_CORE_NUMBER=8
[2025-06-03 03:47:02] Starting ATLAS job with PandaID=6677495551
[2025-06-03 03:47:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 05:20:01]  *** The last 200 lines of the pilot log: ***
[2025-06-03 05:20:01]  is_tar=False
[2025-06-03 05:20:01]  lfn=log.45006595._022814.job.log.tgz.1
[2025-06-03 05:20:01]  mtime=0
[2025-06-03 05:20:01]  protocol_id=None
[2025-06-03 05:20:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 05:20:01]  replicas=None
[2025-06-03 05:20:01]  scope=mc23_13p6TeV
[2025-06-03 05:20:01]  status=None
[2025-06-03 05:20:01]  status_code=0
[2025-06-03 05:20:01]  storage_token=
[2025-06-03 05:20:01]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6677495551/log.45006595._022814.job.log.tgz.1
[2025-06-03 05:20:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/05/log.45006595._022814.job.log.tgz.1
[2025-06-03 05:20:01]  workdir=None
[2025-06-03 05:20:01] ]
[2025-06-03 05:20:01] 2025-06-03 09:19:26,461 | INFO     | transferring file log.45006595._022814.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6677495551/log.45006595._022814.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 05:20:01] 2025-06-03 09:19:26,461 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6677495551/log.45006595._022814.job.log.tgz.1 /tmp/boinchome/slots/5/log.45006595._022814.job
[2025-06-03 05:20:01] 2025-06-03 09:19:26,477 | INFO     | adding to output.list: log.45006595._022814.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/05/log.45006595._022814.job.log.tg
[2025-06-03 05:20:01] 2025-06-03 09:19:26,478 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 05:20:01] 2025-06-03 09:19:26,478 | INFO     | summary of transferred files:
[2025-06-03 05:20:01] 2025-06-03 09:19:26,478 | INFO     |  -- lfn=log.45006595._022814.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 05:20:01] 2025-06-03 09:19:26,478 | INFO     | stage-out finished correctly
[2025-06-03 05:20:01] 2025-06-03 09:19:27,171 | INFO     | monitor loop #394: job 0:6677495551 is in state 'finished'
[2025-06-03 05:20:01] 2025-06-03 09:19:27,171 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:20:01] 2025-06-03 09:19:29,674 | INFO     | monitor loop #395: job 0:6677495551 is in state 'finished'
[2025-06-03 05:20:01] 2025-06-03 09:19:29,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:20:01] 2025-06-03 09:19:30,039 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 05:20:01] 2025-06-03 09:19:31,967 | INFO     | job 6677495551 has state=finished
[2025-06-03 05:20:01] 2025-06-03 09:19:31,968 | INFO     | preparing for final server update for job 6677495551 in state='finished'
[2025-06-03 05:20:01] 2025-06-03 09:19:31,968 | INFO     | this job has now completed (state=finished)
[2025-06-03 05:20:01] 2025-06-03 09:19:31,968 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 05:20:01] 2025-06-03 09:19:31,968 | INFO     | log transfer has been attempted: DONE
[2025-06-03 05:20:01] 2025-06-03 09:19:31,968 | INFO     | job 6677495551 has finished - writing final server update
[2025-06-03 05:20:01] 2025-06-03 09:19:31,969 | INFO     | total number of processed events: 400 (read)
[2025-06-03 05:20:01] 2025-06-03 09:19:31,985 | INFO     | executing command: lscpu
[2025-06-03 05:20:01] 2025-06-03 09:19:32,031 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 05:20:01] 2025-06-03 09:19:32,177 | INFO     | monitor loop #396: job 0:6677495551 is in state 'finished'
[2025-06-03 05:20:01] 2025-06-03 09:19:32,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:20:01] 2025-06-03 09:19:34,680 | INFO     | monitor loop #397: job 0:6677495551 is in state 'finished'
[2025-06-03 05:20:01] 2025-06-03 09:19:34,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:20:01] 2025-06-03 09:19:34,835 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 05:20:01] 2025-06-03 09:19:34,835 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6677495551/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 05:20:01] 2025-06-03 09:19:34,836 | INFO     | extracted standard info from prmon json
[2025-06-03 05:20:01] 2025-06-03 09:19:34,836 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 05:20:01] 2025-06-03 09:19:34,836 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 05:20:01] 2025-06-03 09:19:34,837 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 05:20:01] 2025-06-03 09:19:34,837 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 05:20:01] 2025-06-03 09:19:34,839 | INFO     | fitting pss+swap vs Time
[2025-06-03 05:20:01] 2025-06-03 09:19:34,839 | INFO     | sum of square deviations: 183761585.0
[2025-06-03 05:20:01] 2025-06-03 09:19:34,840 | INFO     | sum of deviations: 11521231680.5
[2025-06-03 05:20:01] 2025-06-03 09:19:34,840 | INFO     | mean x: 1748939688.5
[2025-06-03 05:20:01] 2025-06-03 09:19:34,840 | INFO     | mean y: 2134387.130952381
[2025-06-03 05:20:01] 2025-06-03 09:19:34,840 | INFO     | -- intersect: -109650486134.34529
[2025-06-03 05:20:01] 2025-06-03 09:19:34,840 | INFO     | intersect: -109650486134.34529
[2025-06-03 05:20:01] 2025-06-03 09:19:34,840 | INFO     | chi2: 0.8642626263053775
[2025-06-03 05:20:01] 2025-06-03 09:19:34,841 | INFO     | -- intersect: -109650486134.34529
[2025-06-03 05:20:01] 2025-06-03 09:19:34,841 | INFO     | current memory leak: 62.70 B/s (using 84 data points, chi2=0.86)
[2025-06-03 05:20:01] 2025-06-03 09:19:34,841 | INFO     | ..............................
[2025-06-03 05:20:01] 2025-06-03 09:19:34,841 | INFO     | . Timing measurements:
[2025-06-03 05:20:01] 2025-06-03 09:19:34,841 | INFO     | . get job = 0 s
[2025-06-03 05:20:01] 2025-06-03 09:19:34,841 | INFO     | . initial setup = 2 s
[2025-06-03 05:20:01] 2025-06-03 09:19:34,841 | INFO     | . payload setup = 4 s
[2025-06-03 05:20:01] 2025-06-03 09:19:34,841 | INFO     | . stage-in = 0 s
[2025-06-03 05:20:01] 2025-06-03 09:19:34,842 | INFO     | . payload execution = 5512 s
[2025-06-03 05:20:01] 2025-06-03 09:19:34,842 | INFO     | . stage-out = 0 s
[2025-06-03 05:20:01] 2025-06-03 09:19:34,842 | INFO     | . log creation = 0 s
[2025-06-03 05:20:01] 2025-06-03 09:19:34,842 | INFO     | ..............................
[2025-06-03 05:20:01] 2025-06-03 09:19:35,195 | INFO     | 
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | job summary report
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | --------------------------------------------------
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | PanDA job id: 6677495551
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | task id: 45006595
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | errors: (none)
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | pilot state: finished 
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | transexitcode: 0
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | exeerrorcode: 0
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | exeerrordiag: 
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | exitcode: 0
[2025-06-03 05:20:01] 2025-06-03 09:19:35,196 | INFO     | exitmsg: OK
[2025-06-03 05:20:01] 2025-06-03 09:19:35,197 | INFO     | cpuconsumptiontime: 36396 s
[2025-06-03 05:20:01] 2025-06-03 09:19:35,197 | INFO     | nevents: 400
[2025-06-03 05:20:01] 2025-06-03 09:19:35,197 | INFO     | neventsw: 0
[2025-06-03 05:20:01] 2025-06-03 09:19:35,197 | INFO     | pid: 1467905
[2025-06-03 05:20:01] 2025-06-03 09:19:35,197 | INFO     | pgrp: 1467905
[2025-06-03 05:20:01] 2025-06-03 09:19:35,197 | INFO     | corecount: 8
[2025-06-03 05:20:01] 2025-06-03 09:19:35,197 | INFO     | event service: False
[2025-06-03 05:20:01] 2025-06-03 09:19:35,197 | INFO     | sizes: {0: 2405011, 1: 2405210, 3: 2405416, 11: 2405444, 5520: 2432020, 5522: 2440961, 5525: 2441145, 5530: 2441315}
[2025-06-03 05:20:01] 2025-06-03 09:19:35,197 | INFO     | --------------------------------------------------
[2025-06-03 05:20:01] 2025-06-03 09:19:35,197 | INFO     | 
[2025-06-03 05:20:01] 2025-06-03 09:19:35,197 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-06-03 05:20:01] 2025-06-03 09:19:35,215 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,215 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,215 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,215 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,215 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,215 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,216 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 05:20:01] 2025-06-03 09:19:35,217 | INFO     | job 6677495551 has completed (purged errors)
[2025-06-03 05:20:01] 2025-06-03 09:19:35,217 | INFO     | overall cleanup function is called
[2025-06-03 05:20:01] 2025-06-03 09:19:36,224 | INFO     | --- collectZombieJob: --- 10, [1467905]
[2025-06-03 05:20:01] 2025-06-03 09:19:36,225 | INFO     | zombie collector waiting for pid 1467905
[2025-06-03 05:20:01] 2025-06-03 09:19:36,225 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 05:20:01] 2025-06-03 09:19:36,225 | INFO     | collected zombie processes
[2025-06-03 05:20:01] 2025-06-03 09:19:36,225 | INFO     | will attempt to kill all subprocesses of pid=1467905
[2025-06-03 05:20:01] 2025-06-03 09:19:36,568 | INFO     | process IDs to be killed: [1467905] (in reverse order)
[2025-06-03 05:20:01] 2025-06-03 09:19:36,643 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 05:20:01] 2025-06-03 09:19:36,644 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 05:20:01] 2025-06-03 09:19:36,657 | INFO     | did not find any defunct processes belonging to 1467905
[2025-06-03 05:20:01] 2025-06-03 09:19:36,670 | INFO     | did not find any defunct processes belonging to 1467905
[2025-06-03 05:20:01] 2025-06-03 09:19:36,670 | INFO     | ready for new job
[2025-06-03 05:20:01] 2025-06-03 09:19:36,671 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 05:20:01] 2025-06-03 09:19:36,673 | INFO     | **************************************
[2025-06-03 05:20:01] 2025-06-03 09:19:36,673 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 05:20:01] 2025-06-03 09:19:36,673 | INFO     | **************************************
[2025-06-03 05:20:01] 2025-06-03 09:19:36,673 | INFO     | 
[2025-06-03 05:20:01] 2025-06-03 09:19:36,690 | INFO     | architecture information:
[2025-06-03 05:20:01] 2025-06-03 09:19:36,691 | INFO     | executing command: cat /etc/os-release
[2025-06-03 05:20:01] 2025-06-03 09:19:36,709 | INFO     | cat /etc/os-release:
[2025-06-03 05:20:01] NAME="CentOS Linux"
[2025-06-03 05:20:01] VERSION="7 (Core)"
[2025-06-03 05:20:01] ID="centos"
[2025-06-03 05:20:01] ID_LIKE="rhel fedora"
[2025-06-03 05:20:01] VERSION_ID="7"
[2025-06-03 05:20:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 05:20:01] ANSI_COLOR="0;31"
[2025-06-03 05:20:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 05:20:01] HOME_URL="https://www.centos.org/"
[2025-06-03 05:20:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 05:20:01] 
[2025-06-03 05:20:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 05:20:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 05:20:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 05:20:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 05:20:01] 
[2025-06-03 05:20:01] 2025-06-03 09:19:36,709 | INFO     | **************************************
[2025-06-03 05:20:01] 2025-06-03 09:19:37,212 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-06-03 05:20:01] 2025-06-03 09:19:37,227 | INFO     | sufficient remaining disk space (90529857536 B)
[2025-06-03 05:20:01] 2025-06-03 09:19:37,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 05:20:01] 2025-06-03 09:19:37,227 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 05:20:01] 2025-06-03 09:19:37,228 | INFO     | update_server=False
[2025-06-03 05:20:01] 2025-06-03 09:19:37,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 05:20:01] 2025-06-03 09:19:37,228 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 05:20:01] 2025-06-03 09:19:37,228 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 05:20:01] 2025-06-03 09:19:37,228 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 05:20:01] 2025-06-03 09:19:37,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 05:20:01] 2025-06-03 09:19:37,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 05:20:01] 2025-06-03 09:19:37,280 | INFO     | all job control threads have been joined
[2025-06-03 05:20:01] 2025-06-03 09:19:37,682 | INFO     | all payload control threads have been joined
[2025-06-03 05:20:01] 2025-06-03 09:19:37,849 | INFO     | all data control threads have been joined
[2025-06-03 05:20:01] 2025-06-03 09:19:38,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:20:01] 2025-06-03 09:19:38,186 | INFO     | aborting loop
[2025-06-03 05:20:01] 2025-06-03 09:19:38,233 | INFO     | [job] retrieve thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:38,286 | INFO     | [job] control thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:38,529 | INFO     | [payload] validate_post thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:38,687 | INFO     | [payload] control thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:38,710 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:38,773 | INFO     | [payload] failed_post thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:38,855 | INFO     | [data] control thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:38,983 | INFO     | [job] validate thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:38,983 | INFO     | [data] copytool_in thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:39,064 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:39,145 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:39,191 | INFO     | [job] job monitor thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:39,230 | INFO     | [data] copytool_out thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:39,941 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:20:01] 2025-06-03 09:19:40,635 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 05:20:01] 2025-06-03 09:19:40,947 | INFO     | [job] queue monitor thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:44,640 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:47,670 | INFO     | job.realtimelogging is not enabled
[2025-06-03 05:20:01] 2025-06-03 09:19:48,675 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 05:20:01] 2025-06-03 09:19:49,562 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139736583284544)>', '<ExcThread(monitor, started 139735804663552)>']
[2025-06-03 05:20:01] 2025-06-03 09:19:50,293 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 05:20:01] 2025-06-03 09:19:50,294 | INFO     | [monitor] control thread has ended
[2025-06-03 05:20:01] 2025-06-03 09:19:54,586 | INFO     | all workflow threads have been joined
[2025-06-03 05:20:01] 2025-06-03 09:19:54,587 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 05:20:01] 2025-06-03 09:19:54,587 | INFO     | traces error code: 0
[2025-06-03 05:20:01] 2025-06-03 09:19:54,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 05:20:01] 2025-06-03 09:19:54,707 [wrapper] ==== pilot stdout END ====
[2025-06-03 05:20:01] 2025-06-03 09:19:54,709 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 05:20:01] 2025-06-03 09:19:54,710 [wrapper] pilotpid: 1447277
[2025-06-03 05:20:01] 2025-06-03 09:19:54,711 [wrapper] Pilot exit status: 0
[2025-06-03 05:20:01] 2025-06-03 09:19:54,717 [wrapper] pandaids: 6677495551
[2025-06-03 05:20:01] 2025-06-03 09:19:54,757 [wrapper] cleanup supervisor_pilot 1814328 1447279
[2025-06-03 05:20:01] 2025-06-03 09:19:54,759 [wrapper] Test setup, not cleaning
[2025-06-03 05:20:01] 2025-06-03 09:19:54,761 [wrapper] apfmon messages muted
[2025-06-03 05:20:01] 2025-06-03 09:19:54,763 [wrapper] ==== wrapper stdout END ====
[2025-06-03 05:20:01] 2025-06-03 09:19:54,765 [wrapper] ==== wrapper stderr END ====
[2025-06-03 05:20:01]  *** Error codes and diagnostics ***
[2025-06-03 05:20:01]     "exeErrorCode": 0,
[2025-06-03 05:20:01]     "exeErrorDiag": "",
[2025-06-03 05:20:01]     "pilotErrorCode": 0,
[2025-06-03 05:20:01]     "pilotErrorDiag": "",
[2025-06-03 05:20:01]  *** Listing of results directory ***
[2025-06-03 05:20:01] total 390156
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 02:33 pilot3.tar.gz
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 02:45 queuedata.json
[2025-06-03 05:20:01] -rwx------. 1 boincer umatlas     37140 Jun  3 02:46 runpilot2-wrapper.sh
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas       100 Jun  3 03:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 05:20:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 03:47 run_atlas
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas       105 Jun  3 03:47 job.xml
[2025-06-03 05:20:01] -rw-r--r--. 2 boincer umatlas 215581851 Jun  3 03:47 EVNT.45006593._000913.pool.root.1
[2025-06-03 05:20:01] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 03:47 start_atlas.sh
[2025-06-03 05:20:01] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 03:47 shared
[2025-06-03 05:20:01] -rw-r--r--. 2 boincer umatlas    508875 Jun  3 03:47 input.tar.gz
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas         0 Jun  3 03:47 boinc_lockfile
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas      2524 Jun  3 03:47 pandaJob.out
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas    985499 Jun  3 03:47 agis_schedconf.cvmfs.json
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas   1603667 Jun  3 03:47 agis_ddmendpoints.agis.ALL.json
[2025-06-03 05:20:01] drwx------. 4 boincer umatlas      4096 Jun  3 03:47 pilot3
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas      6860 Jun  3 05:10 init_data.xml
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas 178424908 Jun  3 05:18 HITS.45006595._022814.pool.root.1
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas       529 Jun  3 05:18 boinc_task_state.xml
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas        95 Jun  3 05:18 pilot_heartbeat.json
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas      1036 Jun  3 05:19 memory_monitor_summary.json
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas    306145 Jun  3 05:19 log.45006595._022814.job.log.tgz.1
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas      7718 Jun  3 05:19 heartbeat.json
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas        27 Jun  3 05:19 wrapper_checkpoint.txt
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas      4548 Jun  3 05:19 pilotlog.txt
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas    531806 Jun  3 05:19 log.45006595._022814.job.log.1
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas       357 Jun  3 05:19 output.list
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas       620 Jun  3 05:19 runtime_log
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas    860160 Jun  3 05:19 result.tar.gz
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas      8669 Jun  3 05:19 runtime_log.err
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas       654 Jun  3 05:19 4mDMDmVaag7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdWiKDmr6Kt1m.diag
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 05:20 boinc_mmap_file
[2025-06-03 05:20:01] -rw-r--r--. 1 boincer umatlas     21518 Jun  3 05:20 stderr.txt
[2025-06-03 05:20:01] HITS file was successfully produced:
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas 178424908 Jun  3 05:18 shared/HITS.pool.root.1
[2025-06-03 05:20:01]  *** Contents of shared directory: ***
[2025-06-03 05:20:01] total 386140
[2025-06-03 05:20:01] -rw-r--r--. 2 boincer umatlas 215581851 Jun  3 03:47 ATLAS.root_0
[2025-06-03 05:20:01] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 03:47 start_atlas.sh
[2025-06-03 05:20:01] -rw-r--r--. 2 boincer umatlas    508875 Jun  3 03:47 input.tar.gz
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas 178424908 Jun  3 05:18 HITS.pool.root.1
[2025-06-03 05:20:01] -rw-------. 1 boincer umatlas    860160 Jun  3 05:19 result.tar.gz
05:20:03 (1440485): run_atlas exited; CPU time 36622.362971
05:20:03 (1440485): called boinc_finish(0)

</stderr_txt>
]]>

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