Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:42:09 (1372720): wrapper (7.7.26015): starting
03:42:09 (1372720): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 03:42:09] Arguments: --nthreads 8
[2025-06-03 03:42:09] Threads: 8
[2025-06-03 03:42:09] Checking for CVMFS
[2025-06-03 03:42:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 03:42:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 03:42:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 03:42:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 03:42:10] 2.12.6.0 3036893 21574 431276 146734 0 290 32837711 32935937 10797 16776704 0 106634856 99.638 95999935 24439 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 03:42:10] CVMFS is ok
[2025-06-03 03:42:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 03:42:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 03:42:10] Further information can be found at the LHC@home message board.
[2025-06-03 03:42:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 03:42:10] Checking for apptainer binary...
[2025-06-03 03:42:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 03:42:10] Running /usr/bin/apptainer --version
[2025-06-03 03:42:10] apptainer version 1.4.1-1.el9
[2025-06-03 03:42:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 03:42:10] c6-12-29-4.aglt2.org
[2025-06-03 03:42:10] apptainer works
[2025-06-03 03:42:10] Set ATHENA_PROC_NUMBER=8
[2025-06-03 03:42:10] Set ATHENA_CORE_NUMBER=8
[2025-06-03 03:42:10] Starting ATLAS job with PandaID=6677469956
[2025-06-03 03:42:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 05:13:00]  *** The last 200 lines of the pilot log: ***
[2025-06-03 05:13:00]  is_tar=False
[2025-06-03 05:13:00]  lfn=log.45006595._020275.job.log.tgz.1
[2025-06-03 05:13:00]  mtime=0
[2025-06-03 05:13:00]  protocol_id=None
[2025-06-03 05:13:00]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 05:13:00]  replicas=None
[2025-06-03 05:13:00]  scope=mc23_13p6TeV
[2025-06-03 05:13:00]  status=None
[2025-06-03 05:13:00]  status_code=0
[2025-06-03 05:13:00]  storage_token=
[2025-06-03 05:13:00]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6677469956/log.45006595._020275.job.log.tgz.1
[2025-06-03 05:13:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/f1/log.45006595._020275.job.log.tgz.1
[2025-06-03 05:13:00]  workdir=None
[2025-06-03 05:13:00] ]
[2025-06-03 05:13:00] 2025-06-03 09:12:33,482 | INFO     | transferring file log.45006595._020275.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6677469956/log.45006595._020275.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 05:13:00] 2025-06-03 09:12:33,482 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6677469956/log.45006595._020275.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._020275.job
[2025-06-03 05:13:00] 2025-06-03 09:12:33,501 | INFO     | adding to output.list: log.45006595._020275.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/f1/log.45006595._020275.job.log.tg
[2025-06-03 05:13:00] 2025-06-03 09:12:33,502 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 05:13:00] 2025-06-03 09:12:33,502 | INFO     | summary of transferred files:
[2025-06-03 05:13:00] 2025-06-03 09:12:33,502 | INFO     |  -- lfn=log.45006595._020275.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 05:13:00] 2025-06-03 09:12:33,502 | INFO     | stage-out finished correctly
[2025-06-03 05:13:00] 2025-06-03 09:12:33,600 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 05:13:00] 2025-06-03 09:12:34,897 | INFO     | monitor loop #385: job 0:6677469956 is in state 'finished'
[2025-06-03 05:13:00] 2025-06-03 09:12:34,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:13:00] 2025-06-03 09:12:36,686 | INFO     | job 6677469956 has state=finished
[2025-06-03 05:13:00] 2025-06-03 09:12:36,687 | INFO     | preparing for final server update for job 6677469956 in state='finished'
[2025-06-03 05:13:00] 2025-06-03 09:12:36,687 | INFO     | this job has now completed (state=finished)
[2025-06-03 05:13:00] 2025-06-03 09:12:36,688 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 05:13:00] 2025-06-03 09:12:36,688 | INFO     | log transfer has been attempted: DONE
[2025-06-03 05:13:00] 2025-06-03 09:12:36,688 | INFO     | job 6677469956 has finished - writing final server update
[2025-06-03 05:13:00] 2025-06-03 09:12:36,688 | INFO     | total number of processed events: 400 (read)
[2025-06-03 05:13:00] 2025-06-03 09:12:36,707 | INFO     | executing command: lscpu
[2025-06-03 05:13:00] 2025-06-03 09:12:36,790 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 05:13:00] 2025-06-03 09:12:37,400 | INFO     | monitor loop #386: job 0:6677469956 is in state 'finished'
[2025-06-03 05:13:00] 2025-06-03 09:12:37,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:13:00] 2025-06-03 09:12:39,903 | INFO     | monitor loop #387: job 0:6677469956 is in state 'finished'
[2025-06-03 05:13:00] 2025-06-03 09:12:39,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:13:00] 2025-06-03 09:12:40,338 | INFO     | PID=1379937 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-03 05:13:00] 2025-06-03 09:12:40,338 | INFO     | .. there are 13 such processes running
[2025-06-03 05:13:00] 2025-06-03 09:12:40,370 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 05:13:00] 2025-06-03 09:12:40,371 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6677469956/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 05:13:00] 2025-06-03 09:12:40,371 | INFO     | extracted standard info from prmon json
[2025-06-03 05:13:00] 2025-06-03 09:12:40,372 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 05:13:00] 2025-06-03 09:12:40,372 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 05:13:00] 2025-06-03 09:12:40,372 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 05:13:00] 2025-06-03 09:12:40,372 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 05:13:00] 2025-06-03 09:12:40,374 | INFO     | fitting pss+swap vs Time
[2025-06-03 05:13:00] 2025-06-03 09:12:40,374 | INFO     | sum of square deviations: 170944600.5
[2025-06-03 05:13:00] 2025-06-03 09:12:40,375 | INFO     | sum of deviations: 11089364277.0
[2025-06-03 05:13:00] 2025-06-03 09:12:40,375 | INFO     | mean x: 1748939339.5
[2025-06-03 05:13:00] 2025-06-03 09:12:40,375 | INFO     | mean y: 2129711.8780487804
[2025-06-03 05:13:00] 2025-06-03 09:12:40,375 | INFO     | -- intersect: -113453489110.61455
[2025-06-03 05:13:00] 2025-06-03 09:12:40,375 | INFO     | intersect: -113453489110.61455
[2025-06-03 05:13:00] 2025-06-03 09:12:40,375 | INFO     | chi2: 1.1133137035371108
[2025-06-03 05:13:00] 2025-06-03 09:12:40,376 | INFO     | -- intersect: -113453489110.61455
[2025-06-03 05:13:00] 2025-06-03 09:12:40,376 | INFO     | current memory leak: 64.87 B/s (using 82 data points, chi2=1.11)
[2025-06-03 05:13:00] 2025-06-03 09:12:40,376 | INFO     | ..............................
[2025-06-03 05:13:00] 2025-06-03 09:12:40,376 | INFO     | . Timing measurements:
[2025-06-03 05:13:00] 2025-06-03 09:12:40,376 | INFO     | . get job = 0 s
[2025-06-03 05:13:00] 2025-06-03 09:12:40,376 | INFO     | . initial setup = 2 s
[2025-06-03 05:13:00] 2025-06-03 09:12:40,376 | INFO     | . payload setup = 5 s
[2025-06-03 05:13:00] 2025-06-03 09:12:40,376 | INFO     | . stage-in = 0 s
[2025-06-03 05:13:00] 2025-06-03 09:12:40,376 | INFO     | . payload execution = 5389 s
[2025-06-03 05:13:00] 2025-06-03 09:12:40,377 | INFO     | . stage-out = 0 s
[2025-06-03 05:13:00] 2025-06-03 09:12:40,377 | INFO     | . log creation = 0 s
[2025-06-03 05:13:00] 2025-06-03 09:12:40,377 | INFO     | ..............................
[2025-06-03 05:13:00] 2025-06-03 09:12:40,473 | INFO     | 
[2025-06-03 05:13:00] 2025-06-03 09:12:40,473 | INFO     | job summary report
[2025-06-03 05:13:00] 2025-06-03 09:12:40,473 | INFO     | --------------------------------------------------
[2025-06-03 05:13:00] 2025-06-03 09:12:40,473 | INFO     | PanDA job id: 6677469956
[2025-06-03 05:13:00] 2025-06-03 09:12:40,473 | INFO     | task id: 45006595
[2025-06-03 05:13:00] 2025-06-03 09:12:40,473 | INFO     | errors: (none)
[2025-06-03 05:13:00] 2025-06-03 09:12:40,473 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 05:13:00] 2025-06-03 09:12:40,473 | INFO     | pilot state: finished 
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | transexitcode: 0
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | exeerrorcode: 0
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | exeerrordiag: 
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | exitcode: 0
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | exitmsg: OK
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | cpuconsumptiontime: 36068 s
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | nevents: 400
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | neventsw: 0
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | pid: 1394142
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | pgrp: 1394142
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | corecount: 8
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | event service: False
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | sizes: {0: 2404955, 1: 2405210, 5: 2405416, 12: 2405472, 5398: 2432020, 5399: 2441145, 5406: 2441259}
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | --------------------------------------------------
[2025-06-03 05:13:00] 2025-06-03 09:12:40,474 | INFO     | 
[2025-06-03 05:13:00] 2025-06-03 09:12:40,475 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-03 05:13:00] 2025-06-03 09:12:40,493 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,493 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,493 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,493 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,493 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 05:13:00] 2025-06-03 09:12:40,494 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,495 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 05:13:00] 2025-06-03 09:12:40,495 | INFO     | job 6677469956 has completed (purged errors)
[2025-06-03 05:13:00] 2025-06-03 09:12:40,495 | INFO     | overall cleanup function is called
[2025-06-03 05:13:00] 2025-06-03 09:12:41,502 | INFO     | --- collectZombieJob: --- 10, [1394142]
[2025-06-03 05:13:00] 2025-06-03 09:12:41,503 | INFO     | zombie collector waiting for pid 1394142
[2025-06-03 05:13:00] 2025-06-03 09:12:41,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 05:13:00] 2025-06-03 09:12:41,503 | INFO     | collected zombie processes
[2025-06-03 05:13:00] 2025-06-03 09:12:41,503 | INFO     | will attempt to kill all subprocesses of pid=1394142
[2025-06-03 05:13:00] 2025-06-03 09:12:41,879 | INFO     | process IDs to be killed: [1394142] (in reverse order)
[2025-06-03 05:13:00] 2025-06-03 09:12:41,949 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 05:13:00] 2025-06-03 09:12:41,949 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 05:13:00] 2025-06-03 09:12:41,962 | INFO     | did not find any defunct processes belonging to 1394142
[2025-06-03 05:13:00] 2025-06-03 09:12:41,974 | INFO     | did not find any defunct processes belonging to 1394142
[2025-06-03 05:13:00] 2025-06-03 09:12:41,975 | INFO     | ready for new job
[2025-06-03 05:13:00] 2025-06-03 09:12:41,975 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 05:13:00] 2025-06-03 09:12:41,977 | INFO     | **************************************
[2025-06-03 05:13:00] 2025-06-03 09:12:41,977 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 05:13:00] 2025-06-03 09:12:41,977 | INFO     | **************************************
[2025-06-03 05:13:00] 2025-06-03 09:12:41,977 | INFO     | 
[2025-06-03 05:13:00] 2025-06-03 09:12:41,994 | INFO     | architecture information:
[2025-06-03 05:13:00] 2025-06-03 09:12:41,994 | INFO     | executing command: cat /etc/os-release
[2025-06-03 05:13:00] 2025-06-03 09:12:42,010 | INFO     | cat /etc/os-release:
[2025-06-03 05:13:00] NAME="CentOS Linux"
[2025-06-03 05:13:00] VERSION="7 (Core)"
[2025-06-03 05:13:00] ID="centos"
[2025-06-03 05:13:00] ID_LIKE="rhel fedora"
[2025-06-03 05:13:00] VERSION_ID="7"
[2025-06-03 05:13:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 05:13:00] ANSI_COLOR="0;31"
[2025-06-03 05:13:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 05:13:00] HOME_URL="https://www.centos.org/"
[2025-06-03 05:13:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 05:13:00] 
[2025-06-03 05:13:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 05:13:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 05:13:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 05:13:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 05:13:00] 
[2025-06-03 05:13:00] 2025-06-03 09:12:42,010 | INFO     | **************************************
[2025-06-03 05:13:00] 2025-06-03 09:12:42,513 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-03 05:13:00] 2025-06-03 09:12:42,531 | INFO     | sufficient remaining disk space (90336919552 B)
[2025-06-03 05:13:00] 2025-06-03 09:12:42,531 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 05:13:00] 2025-06-03 09:12:42,531 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 05:13:00] 2025-06-03 09:12:42,531 | INFO     | update_server=False
[2025-06-03 05:13:00] 2025-06-03 09:12:42,532 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 05:13:00] 2025-06-03 09:12:42,532 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 05:13:00] 2025-06-03 09:12:42,532 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 05:13:00] 2025-06-03 09:12:42,533 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 05:13:00] 2025-06-03 09:12:42,533 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 05:13:00] 2025-06-03 09:12:42,533 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 05:13:00] 2025-06-03 09:12:42,884 | INFO     | all data control threads have been joined
[2025-06-03 05:13:00] 2025-06-03 09:12:43,376 | INFO     | all job control threads have been joined
[2025-06-03 05:13:00] 2025-06-03 09:12:43,412 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:13:00] 2025-06-03 09:12:43,412 | INFO     | aborting loop
[2025-06-03 05:13:00] 2025-06-03 09:12:43,537 | INFO     | [job] retrieve thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:43,670 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:43,708 | INFO     | all payload control threads have been joined
[2025-06-03 05:13:00] 2025-06-03 09:12:43,781 | INFO     | [payload] failed_post thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:43,889 | INFO     | [data] control thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:44,106 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:44,203 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 05:13:00] 2025-06-03 09:12:44,382 | INFO     | [job] control thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:44,417 | INFO     | [job] job monitor thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:44,516 | INFO     | [data] copytool_in thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:44,517 | INFO     | [job] validate thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:44,536 | INFO     | [data] copytool_out thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:44,713 | INFO     | [payload] control thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:44,902 | INFO     | [payload] validate_post thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:45,030 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:45,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:13:00] 2025-06-03 09:12:46,483 | INFO     | [job] queue monitor thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:48,207 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:53,177 | INFO     | job.realtimelogging is not enabled
[2025-06-03 05:13:00] 2025-06-03 09:12:54,184 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 05:13:00] 2025-06-03 09:12:55,472 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370282432320)>', '<ExcThread(monitor, started 140369614313216)>']
[2025-06-03 05:13:00] 2025-06-03 09:12:55,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 05:13:00] 2025-06-03 09:12:55,595 | INFO     | [monitor] control thread has ended
[2025-06-03 05:13:00] 2025-06-03 09:13:00,496 | INFO     | all workflow threads have been joined
[2025-06-03 05:13:00] 2025-06-03 09:13:00,496 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 05:13:00] 2025-06-03 09:13:00,497 | INFO     | traces error code: 0
[2025-06-03 05:13:00] 2025-06-03 09:13:00,497 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 05:13:00] 2025-06-03 09:13:00,657 [wrapper] ==== pilot stdout END ====
[2025-06-03 05:13:00] 2025-06-03 09:13:00,660 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 05:13:00] 2025-06-03 09:13:00,663 [wrapper] pilotpid: 1379937
[2025-06-03 05:13:00] 2025-06-03 09:13:00,666 [wrapper] Pilot exit status: 0
[2025-06-03 05:13:00] 2025-06-03 09:13:00,675 [wrapper] pandaids: 6677469956
[2025-06-03 05:13:00] 2025-06-03 09:13:00,742 [wrapper] cleanup supervisor_pilot 1791200 1379938
[2025-06-03 05:13:00] 2025-06-03 09:13:00,744 [wrapper] Test setup, not cleaning
[2025-06-03 05:13:00] 2025-06-03 09:13:00,747 [wrapper] apfmon messages muted
[2025-06-03 05:13:00] 2025-06-03 09:13:00,749 [wrapper] ==== wrapper stdout END ====
[2025-06-03 05:13:00] 2025-06-03 09:13:00,751 [wrapper] ==== wrapper stderr END ====
[2025-06-03 05:13:00]  *** Error codes and diagnostics ***
[2025-06-03 05:13:00]     "exeErrorCode": 0,
[2025-06-03 05:13:00]     "exeErrorDiag": "",
[2025-06-03 05:13:00]     "pilotErrorCode": 0,
[2025-06-03 05:13:00]     "pilotErrorDiag": "",
[2025-06-03 05:13:00]  *** Listing of results directory ***
[2025-06-03 05:13:00] total 394756
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 00:53 pilot3.tar.gz
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 01:05 queuedata.json
[2025-06-03 05:13:00] -rwx------. 1 boincer umatlas     37140 Jun  3 01:06 runpilot2-wrapper.sh
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas       100 Jun  3 03:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 05:13:00] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 03:42 run_atlas
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas       105 Jun  3 03:42 job.xml
[2025-06-03 05:13:00] -rw-r--r--. 2 boincer umatlas 217262916 Jun  3 03:42 EVNT.45006593._000811.pool.root.1
[2025-06-03 05:13:00] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 03:42 start_atlas.sh
[2025-06-03 05:13:00] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 03:42 shared
[2025-06-03 05:13:00] -rw-r--r--. 2 boincer umatlas    508885 Jun  3 03:42 input.tar.gz
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas         0 Jun  3 03:42 boinc_lockfile
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas      2524 Jun  3 03:42 pandaJob.out
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas    985499 Jun  3 03:42 agis_schedconf.cvmfs.json
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas   1603667 Jun  3 03:42 agis_ddmendpoints.agis.ALL.json
[2025-06-03 05:13:00] drwx------. 4 boincer umatlas      4096 Jun  3 03:42 pilot3
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas      6860 Jun  3 05:10 init_data.xml
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas 181449847 Jun  3 05:11 HITS.45006595._020275.pool.root.1
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas       530 Jun  3 05:11 boinc_task_state.xml
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas        95 Jun  3 05:11 pilot_heartbeat.json
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas      1036 Jun  3 05:12 memory_monitor_summary.json
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas    321932 Jun  3 05:12 log.45006595._020275.job.log.tgz.1
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas      7717 Jun  3 05:12 heartbeat.json
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 05:12 boinc_mmap_file
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas        27 Jun  3 05:12 wrapper_checkpoint.txt
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas      4548 Jun  3 05:13 pilotlog.txt
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas    519784 Jun  3 05:13 log.45006595._020275.job.log.1
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas       357 Jun  3 05:13 output.list
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas       620 Jun  3 05:13 runtime_log
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas    860160 Jun  3 05:13 result.tar.gz
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas      8669 Jun  3 05:13 runtime_log.err
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas       653 Jun  3 05:13 ltQODmL2Yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmh5hKDmJsEkgm.diag
[2025-06-03 05:13:00] -rw-r--r--. 1 boincer umatlas     21569 Jun  3 05:13 stderr.txt
[2025-06-03 05:13:00] HITS file was successfully produced:
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas 181449847 Jun  3 05:11 shared/HITS.pool.root.1
[2025-06-03 05:13:00]  *** Contents of shared directory: ***
[2025-06-03 05:13:00] total 390736
[2025-06-03 05:13:00] -rw-r--r--. 2 boincer umatlas 217262916 Jun  3 03:42 ATLAS.root_0
[2025-06-03 05:13:00] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 03:42 start_atlas.sh
[2025-06-03 05:13:00] -rw-r--r--. 2 boincer umatlas    508885 Jun  3 03:42 input.tar.gz
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas 181449847 Jun  3 05:11 HITS.pool.root.1
[2025-06-03 05:13:00] -rw-------. 1 boincer umatlas    860160 Jun  3 05:13 result.tar.gz
05:13:02 (1372720): run_atlas exited; CPU time 36287.876464
05:13:02 (1372720): called boinc_finish(0)

</stderr_txt>
]]>

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